Works matching IS 1553734X AND DT 2025 AND VI 21 AND IP 5

Results: 66

Understanding the hemodynamic changes in fetuses with coarctation of the aorta using a lumped model of fetal circulation.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013096

By:

Villanueva-Baxarias, Inmaculada;
Pellisé-Tintoré, Anna;
Pérez-Rodríguez, María;
Nogué, Laura;
Vaziraani, Pooja;
Soveral, Iris;
Crispi, Fàtima;
Gómez, Olga;
Garcia-Canadilla, Patricia;
Camara, Oscar;
Bijnens, Bart;
Bernardino, Gabriel

Publication type:

Article

Comparison of sequence- and structure-based antibody clustering approaches on simulated repertoire sequencing data.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013057

By:

Waury, Katharina;
Lelieveld, Stefan;
Abeln, Sanne;
van den Ham, Henk-Jan

Publication type:

Article

Accounting for contact tracing in epidemiological birth-death models.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012461

By:

Zhukova, Anna;
Gascuel, Olivier

Publication type:

Article

Cellular morphodynamics as quantifiers for functional states of resident tissue macrophages in vivo.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1011859

By:

Schnitzerlein, Miriam;
Greto, Eric;
Wegner, Anja;
Möller, Anna;
Aust, Oliver;
Ben Brahim, Oumaima;
Blumenthal, David B.;
Zaburdaev, Vasily;
Uderhardt, Stefan

Publication type:

Article

RETINA: Reconstruction-based pre-trained enhanced TransUNet for electron microscopy segmentation on the CEM500K dataset.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013115

By:

Xing, Cheng;
Xie, Ronald;
Bader, Gary D.

Publication type:

Article

Ten simple rules for queer data collection and analysis by STEM researchers.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013091

By:

Grijseels, Dori M.;
Banqueri, M.;
Iyer, Keerthana;
Hanlin, Lee;
Ortiz Alvarez de la Campa, Melanie;
Pagliaccio, David;
Rajaraman, Bittu K.;
Schechtman, Eitan

Publication type:

Article

OmniSegger: A time-lapse image analysis pipeline for bacterial cells.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013088

By:

Lo, Teresa W.;
Cutler, Kevin J.;
James Choi, H.;
Wiggins, Paul A.

Publication type:

Article

Expectation generation and its effect on subsequent pain and visual perception.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013053

By:

Botvinik-Nezer, Rotem;
Geuter, Stephan;
Lindquist, Martin A.;
Wager, Tor D.

Publication type:

Article

Balancing prior knowledge and sensory data in a predictive coding model of coherent motion detection.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013116

By:

Nemati, Elnaz;
Grayden, David B.;
Burkitt, Anthony N.;
Eskikand, Parvin Zarei

Publication type:

Article

Modelling motility of Trypanosoma brucei.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013111

By:

Overberg, Florian A.;
Jamshidi Khameneh, Narges;
Krüger, Timothy;
Engstler, Markus;
Gompper, Gerhard;
Fedosov, Dmitry A.

Publication type:

Article

M-band wavelet-based multi-view clustering of cells.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013060

By:

Liu, Tong;
Liu, Zihuan;
Sun, Wenke;
Shankar, Adeethyia;
Zhao, Yongzhong;
Wang, Xiaodi

Publication type:

Article

The respiratory cycle modulates distinct dynamics of affective and perceptual decision-making.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013086

By:

Brændholt, Malthe;
Nikolova, Niia;
Vejlø, Melina;
Banellis, Leah;
Fardo, Francesca;
Kluger, Daniel S.;
Allen, Micah

Publication type:

Article

Geometric and mechanical guidance: Role of stigmatic epidermis in early pollen tube pathfinding in arabidopsis.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013077

By:

Riglet, Lucie;
Quilliet, Catherine;
Godin, Christophe;
John, Karin;
Fobis-Loisy, Isabelle

Publication type:

Article

Relating sparse and predictive coding to divisive normalization.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013059

By:

Lian, Yanbo;
Burkitt, Anthony N.

Publication type:

Article

Stimulus uncertainty and relative reward rates determine adaptive responding in perceptual decision-making.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012636

By:

de la Cuesta-Ferrer, Luis;
Koß, Christina;
Starosta, Sarah;
Kasties, Nils;
Lengersdorf, Daniel;
Jäkel, Frank;
Stüttgen, Maik C.

Publication type:

Article

Improved detection of microbiome-disease associations via population structure-aware generalized linear mixed effects models (microSLAM).

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012277

By:

Goldman, Miriam;
Zhao, Chunyu;
Pollard, Katherine S.

Publication type:

Article

MaxComp: Predicting single-cell chromatin compartments from 3D chromosome structures.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013114

By:

Zhan, Yuxiang;
Musella, Francesco;
Alber, Frank

Publication type:

Article

Cell-TRACTR: A transformer-based model for end-to-end segmentation and tracking of cells.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013071

By:

O'Connor, Owen M.;
Dunlop, Mary J.

Publication type:

Article

Vertex models capturing subcellular scales in epithelial tissues.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012993

By:

Lange, Zoë;
Matthäus, Franziska;
Qiu, Mingfeng

Publication type:

Article

A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013070

By:

Farina, Sofia;
Cattabiani, Alessandro;
Mandge, Darshan;
Shichkova, Polina;
Isbister, James B.;
Jacquemier, Jean;
King, James G.;
Markram, Henry;
Keller, Daniel

Publication type:

Article

BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013023

By:

Tharayil, Joseph James;
Blanco Alonso, Jorge;
Farcito, Silvia;
Lloyd, Bryn;
Romani, Armando;
Boci, Elvis;
Cassara, Antonino;
Schürmann, Felix;
Neufeld, Esra;
Kuster, Niels;
Reimann, Michael

Publication type:

Article

Interleaved single and bursting spiking resonance in neurons.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013126

By:

Ceballos, Cesar C.;
Chadly, Nourdin;
Lowet, Eric;
Pena, Rodrigo F. O.

Publication type:

Article

Optical Neuroimage Studio (OptiNiSt): Intuitive, scalable, extendable framework for optical neuroimage data analysis.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013087

By:

Yamane, Yukako;
Li, Yuzhe;
Matsumoto, Keita;
Kanai, Ryota;
Desforges, Miles;
Gutierrez, Carlos Enrique;
Doya, Kenji

Publication type:

Article

Generative AI mitigates representation bias and improves model fairness through synthetic health data.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013080

By:

Marchesi, Raffaele;
Micheletti, Nicolo;
I-Hsien Kuo, Nicholas;
Barbieri, Sebastiano;
Jurman, Giuseppe;
Osmani, Venet

Publication type:

Article

Uncovering the impact of infection routes on within-host MPXV dynamics: Insights from a mathematical modeling study.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013073

By:

Deng, Qi;
Woldegerima, Woldegebriel Assefa;
Zhang, Wenjing;
Asgary, Ali;
Kong, Jude Dzevela;
Flicker, Sarah;
Ogden, Nicholas H.;
Orbinski, James;
Bragazzi, Nicola Luigi;
Wu, Jianhong

Publication type:

Article

MobsPy: A programming language for biochemical reaction networks.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013024

By:

Cravo, Fabricio;
Prakash, Gayathri;
Függer, Matthias;
Nowak, Thomas

Publication type:

Article

How swarming bats can use the collective soundscape for obstacle avoidance.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013013

By:

Vanderelst, Dieter;
Peremans, Herbert

Publication type:

Article

Building momentum: A computational account of persistence toward long-term goals.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013054

By:

Aenugu, Sneha;
O'Doherty, John P.

Publication type:

Article

Mechanisms of mistrust: A Bayesian account of misinformation learning.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012814

By:

Schulz, Lion;
Streicher, Yannick;
Schulz, Eric;
Bhui, Rahul;
Dayan, Peter

Publication type:

Article

The effects of the post-delay epochs on working memory error reduction.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013083

By:

Ye, Zeyuan;
Li, Haoran;
Tian, Liang;
Zhou, Changsong

Publication type:

Article

Inferring synaptic transmission from the stochastic dynamics of the quantal content: An analytical approach.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013067

By:

Vahdat, Zahra;
Gambrell, Oliver;
Fisch, Jonas;
Friauf, Eckhard;
Singh, Abhyudai

Publication type:

Article

Identifying the DNA methylation preference of transcription factors using ProtBERT and SVM.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012513

By:

Li, Yanchao;
Zou, Quan;
Dai, Qi;
Stalin, Antony;
Luo, Ximei

Publication type:

Article

Conformal prediction for uncertainty quantification in dynamic biological systems.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013098

By:

Portela, Alberto;
Banga, Julio R.;
Matabuena, Marcos

Publication type:

Article

Integrated mathematical and experimental modeling uncovers enhanced EMT plasticity upon loss of the DLC1 tumor suppressor.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013076

By:

Höpfl, Sebastian;
Özverin, Merih;
Nowack, Helena;
Tamas, Raluca;
Clark, Andrew G.;
Radde, Nicole;
Olayioye, Monilola A.

Publication type:

Article

How are estimated cellular turnover rates influenced by the dynamics of a source population?

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013052

By:

Swain, Arpit C.;
Borghans, José A. M.;
de Boer, Rob J.

Publication type:

Article

Knowledge-aware contrastive heterogeneous molecular graph learning.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013008

By:

Chen, Mukun;
Wu, Jia;
Pan, Shirui;
Lin, Fu;
Du, Bo;
Gong, Xiuwen;
Hu, Wenbin

Publication type:

Article

Mathematical modeling of malaria vaccination with seasonality and immune feedback.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012988

By:

Qu, Zhuolin;
Patterson, Denis;
Zhao, Lihong;
Ponce, Joan;
Edholm, Christina J.;
Prosper Feldman, Olivia F.;
Childs, Lauren M.

Publication type:

Article

The geometry of efficient codes: How rate-distortion trade-offs distort the latent representations of generative models.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012952

By:

D'Amato, Leo;
Luca Lancia, Gian;
Pezzulo, Giovanni

Publication type:

Article

Capturing the emergent dynamical structure in biophysical neural models.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012572

By:

Milinkovic, Borjan;
Barnett, Lionel;
Carter, Olivia;
Seth, Anil K.;
Andrillon, Thomas

Publication type:

Article

Success-efficient/failure-safe strategy for hierarchical reinforcement motor learning.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013089

By:

Babič, Jan;
Kunavar, Tjasa;
Oztop, Erhan;
Kawato, Mitsuo

Publication type:

Article

Scoring protein-ligand binding structures through learning atomic graphs with inter-molecular adjacency.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013074

By:

Wang, Debby D.;
Huang, Yuting

Publication type:

Article

Human impedance modulation to improve visuo-haptic perception.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013042

By:

Cheng, Xiaoxiao;
Shen, Shixian;
Ivanova, Ekaterina;
Carboni, Gerolamo;
Takagi, Atsushi;
Burdet, Etienne

Publication type:

Article

Ten quick tips to perform meaningful and reproducible molecular docking calculations.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013030

By:

Martis, Elvis A. F.;
Téletchéa, Stéphane

Publication type:

Article

Parallel synapses with transmission nonlinearities enhance neuronal classification capacity.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012285

By:

Song, Yuru;
Benna, Marcus K.

Publication type:

Article

Macroecological patterns in experimental microbial communities.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013044

By:

Shoemaker, William R.;
Sánchez, Álvaro;
Grilli, Jacopo

Publication type:

Article

Smart epidemic control: A hybrid model blending ODEs and agent-based simulations for optimal, real-world intervention planning.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013028

By:

Polcz, Péter;
Reguly, István Z.;
Tornai, Kálmán;
Juhász, János;
Pongor, Sándor;
Csikász-Nagy, Attila;
Szederkényi, Gábor

Publication type:

Article

Dual-use capabilities of concern of biological AI models.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012975

By:

Pannu, Jaspreet;
Bloomfield, Doni;
MacKnight, Robert;
Hanke, Moritz S.;
Zhu, Alex;
Gomes, Gabe;
Cicero, Anita;
Inglesby, Thomas V.

Publication type:

Article

Distinguishing multiple roles of T cell and macrophage involvement in determining lymph node fates during Mycobacterium tuberculosis infection.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013033

By:

Krupinsky, Kathryn C.;
Michael, Christian T.;
Nanda, Pariksheet;
Mattila, Joshua T.;
Kirschner, Denise

Publication type:

Article

Learning a deep language model for microbiomes: The power of large scale unlabeled microbiome data.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1011353

By:

Pope, Quintin;
Varma, Rohan;
Tataru, Christine;
David, Maude M;
Fern, Xiaoli

Publication type:

Article

Multiscale simulations that incorporate patient-specific neural network models of platelet calcium signaling predict diverse thrombotic outcomes under flow.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013085

By:

Shankar, Kaushik N.;
Sinno, Talid;
Diamond, Scott L.

Publication type:

Article