Works matching IS 1553734X AND DT 2024 AND VI 20 AND IP 6

Results: 57

Prioritizing drug targets by perturbing biological network response functions.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012195

By:

Perrone, Matthew C.;
Lerner, Michael G.;
Dunworth, Matthew;
Ewald, Andrew J.;
Bader, Joel S.

Publication type:

Article

ST-CellSeg: Cell segmentation for imaging-based spatial transcriptomics using multi-scale manifold learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012254

By:

Li, Youcheng;
Lac, Leann;
Liu, Qian;
Hu, Pingzhao

Publication type:

Article

Ten simple rules for successful and sustainable African research collaborations.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012197

By:

Dine, Roseline Dzekem;
Elkheir, Lamis Yahia Mohamed;
Raimi, Morufu Olalekan;
Alemayehu, Micheal;
Mohamed, Salem Youssef;
Turzin, Justice Kwadwo;
Arogundade, Femi Qudus;
Ochola, Elizabeth Akinyi;
Nasiyo, Alex Mukungu;
Mwawanga, Raziah Quallatein;
Yabo, Yahaya Abubakar

Publication type:

Article

Assessing the extinction risk of the spontaneous flora in urban tree bases.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012191

By:

Louvet, Apolline;
Mantoux, Clément;
Machon, Nathalie

Publication type:

Article

The stabilized supralinear network accounts for the contrast dependence of visual cortical gamma oscillations.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012190

By:

Holt, Caleb J.;
Miller, Kenneth D.;
Ahmadian, Yashar

Publication type:

Article

Cracking AlphaFold2: Leveraging the power of artificial intelligence in undergraduate biochemistry curriculums.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012123

By:

Boland, Devon J.;
Ayres, Nicola M.

Publication type:

Article

Ten "simple" rules for non-Indigenous researchers engaging Indigenous communities in Arctic research.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012093

By:

O'Brien, Joy M.;
Blais, Nathan;
Butler, Carmen;
White, Natalie;
Bustead, Ash;
Figler, Collin;
Wells, McKenna;
Anderson, George;
Yuhas, Anna;
Ernakovich, Jessica Gilman

Publication type:

Article

MTMol-GPT: De novo multi-target molecular generation with transformer-based generative adversarial imitation learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012229

By:

Ai, Chengwei;
Yang, Hongpeng;
Liu, Xiaoyi;
Dong, Ruihan;
Ding, Yijie;
Guo, Fei

Publication type:

Article

A simulation study on the antiarrhythmic mechanisms of established agents in myocardial ischemia and infarction.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012244

By:

Li, Qince;
Yan, Zheng;
Wang, Zhen;
Liang, Cuiping;
Wang, Xiqian;
Wu, Xianghu;
Wang, Wei;
Yuan, Yongfeng;
Wang, Kuanquan

Publication type:

Article

Differences in the consolidation by spontaneous and evoked ripples in the presence of active dendrites.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012218

By:

Jauch, Jannik;
Becker, Moritz;
Tetzlaff, Christian;
Fauth, Michael Jan

Publication type:

Article

GEM-based computational modeling for exploring metabolic interactions in a microbial community.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012233

By:

Mirzaei, Soraya;
Tefagh, Mojtaba

Publication type:

Article

Logistic PCA explains differences between genome-scale metabolic models in terms of metabolic pathways.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012236

By:

Zehetner, Leopold;
Széliová, Diana;
Kraus, Barbara;
Hernandez Bort, Juan A.;
Zanghellini, Jürgen

Publication type:

Article

A toolkit for the dynamic study of air sacs in siamang and other elastic circular structures.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012222

By:

Burchardt, Lara S.;
van de Sande, Yana;
Kehy, Mounia;
Gamba, Marco;
Ravignani, Andrea;
Pouw, Wim

Publication type:

Article

Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011895

By:

Adolf-Bryfogle, Jared;
Labonte, Jason W.;
Kraft, John C.;
Shapovalov, Maxim;
Raemisch, Sebastian;
Lütteke, Thomas;
DiMaio, Frank;
Bahl, Christopher D.;
Pallesen, Jesper;
King, Neil P.;
Gray, Jeffrey J.;
Kulp, Daniel W.;
Schief, William R.

Publication type:

Article

Ten simple rules to make computable knowledge shareable and reusable.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012179

By:

Conte, Marisa L.;
Boisvert, Peter;
Barrison, Philip;
Seifi, Farid;
Landis-Lewis, Zach;
Flynn, Allen;
Friedman, Charles P.

Publication type:

Article

Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012239

By:

Woo, Hyeonuk;
Kim, Yubeen;
Seok, Chaok

Publication type:

Article

Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012173

By:

Bayarri, Genís;
Andrio, Pau;
Gelpí, Josep Lluís;
Hospital, Adam;
Orozco, Modesto

Publication type:

Article

A dynamic foot model for predictive simulations of human gait reveals causal relations between foot structure and whole-body mechanics.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012219

By:

D'Hondt, Lars;
De Groote, Friedl;
Afschrift, Maarten

Publication type:

Article

Beliefs, compulsive behavior and reduced confidence in control.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012207

By:

Rigoux, Lionel;
Stephan, Klaas E.;
Petzschner, Frederike H.

Publication type:

Article

Ten simple rules for implementing a successful field season.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012189

By:

Perry, Lindsey R.;
Kelble, Rebecca L.;
Brewer, Valerie N.;
Christensen, Cara E.;
Kerstens, Mark E.;
Owens, Terrah M.;
Sampognaro, Megan A.;
Zahor, Dorothy L.;
Zitomer, Rachel A.;
Austin, Suzanne H.;
Cornelius, Jamie M.;
Dinkins, Jonathan B.;
Frey, Sarah J. K.;
Frisinger, Cecelia E.;
LeQuier, Stephanie M.;
Lundblad, Carl G.;
Oskowski, Jamie;
Perlman, Hallie R.;
Price, William J.;
Rich, Richard

Publication type:

Article

Image2Flow: A proof-of-concept hybrid image and graph convolutional neural network for rapid patient-specific pulmonary artery segmentation and CFD flow field calculation from 3D cardiac MRI data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012231

By:

Yao, Tina;
Pajaziti, Endrit;
Quail, Michael;
Schievano, Silvia;
Steeden, Jennifer;
Muthurangu, Vivek

Publication type:

Article

Ten simple rules for computational biologists collaborating with wet lab researchers.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012174

By:

Robinson, Mark D.;
Cai, Peiying;
Emons, Martin;
Gerber, Reto;
Germain, Pierre-Luc;
Gunz, Samuel;
Luo, Siyuan;
Moro, Giulia;
Sonder, Emanuel;
Sonrel, Anthony;
Wang, Jiayi;
Wissel, David;
Mallona, Izaskun

Publication type:

Article

ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012208

By:

Swapna, Lakshmipuram S.;
Stevens, Grant C.;
Sardinha-Silva, Aline;
Hu, Lucas Zhongming;
Brand, Verena;
Fusca, Daniel D.;
Wan, Cuihong;
Xiong, Xuejian;
Boyle, Jon P.;
Grigg, Michael E.;
Emili, Andrew;
Parkinson, John

Publication type:

Article

Ten simple rules for implementing electronic lab notebooks (ELNs).

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012170

By:

Vandendorpe, Justine;
Adam, Beatrix;
Wilbrandt, Jeanne;
Lindstädt, Birte;
Förstner, Konrad U.

Publication type:

Article

Knotted artifacts in predicted 3D RNA structures.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011959

By:

Gren, Bartosz A.;
Antczak, Maciej;
Zok, Tomasz;
Sulkowska, Joanna I.;
Szachniuk, Marta

Publication type:

Article

Computational design of Periplasmic binding protein biosensors guided by molecular dynamics.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012212

By:

O'Shea, Jack M.;
Doerner, Peter;
Richardson, Annis;
Wood, Christopher W.

Publication type:

Article

Missing data in amortized simulation-based neural posterior estimation.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012184

By:

Wang, Zijian;
Hasenauer, Jan;
Schälte, Yannik

Publication type:

Article

mbtransfer: Microbiome intervention analysis using transfer functions and mirror statistics.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012196

By:

Sankaran, Kris;
Jeganathan, Pratheepa

Publication type:

Article

Threshold-awareness in adaptive cancer therapy.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012165

By:

Wang, MingYi;
Scott, Jacob G.;
Vladimirsky, Alexander

Publication type:

Article

Using random forests to uncover the predictive power of distance-varying cell interactions in tumor microenvironments.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011361

By:

VanderDoes, Jeremy;
Marceaux, Claire;
Yokote, Kenta;
Asselin-Labat, Marie-Liesse;
Rice, Gregory;
Hywood, Jack D.

Publication type:

Article

An algorithm to build synthetic temporal contact networks based on close-proximity interactions data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012227

By:

Duval, Audrey;
Leclerc, Quentin J.;
Guillemot, Didier;
Temime, Laura;
Opatowski, Lulla

Publication type:

Article

Correction: Seasonal influenza: Modelling approaches to capture immunity propagation.

Published in:

2024

By:

Hill, Edward M.;
Petrou, Stavros;
de Lusignan, Simon;
Yonova, Ivelina;
Keeling, Matt J.

Publication type:

Correction Notice

Combined translational and rotational perturbations of standing balance reveal contributions of reduced reciprocal inhibition to balance impairments in children with cerebral palsy.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012209

By:

Willaert, Jente;
Desloovere, Kaat;
Van Campenhout, Anja;
Ting, Lena H.;
De Groote, Friedl

Publication type:

Article

The attentive reconstruction of objects facilitates robust object recognition.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012159

By:

Ahn, Seoyoung;
Adeli, Hossein;
Zelinsky, Gregory J.

Publication type:

Article

Infection patterns in simple and complex contagion processes on networks.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012206

By:

Contreras, Diego Andrés;
Cencetti, Giulia;
Barrat, Alain

Publication type:

Article

The influence of cross-border mobility on the COVID-19 epidemic in Nordic countries.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012182

By:

Shubin, Mikhail;
Brustad, Hilde Kjelgaard;
Midtbø, Jørgen Eriksson;
Günther, Felix;
Alessandretti, Laura;
Ala-Nissila, Tapio;
Scalia Tomba, Gianpaolo;
Kivelä, Mikko;
Chan, Louis Yat Hin;
Leskelä, Lasse

Publication type:

Article

Conductance-based dendrites perform Bayes-optimal cue integration.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012047

By:

Jordan, Jakob;
Sacramento, João;
Wybo, Willem A. M.;
Petrovici, Mihai A.;
Senn, Walter

Publication type:

Article

Cancer cell sedimentation in 3D cultures reveals active migration regulated by self-generated gradients and adhesion sites.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012112

By:

Dimitriou, Nikolaos M.;
Flores-Torres, Salvador;
Kyriakidou, Maria;
Kinsella, Joseph Matthew;
Mitsis, Georgios D.

Publication type:

Article

Mapping the Evolutionary Space of SARS-CoV-2 Variants to Anticipate Emergence of Subvariants Resistant to COVID-19 Therapeutics.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012215

By:

Rojas Chávez, Roberth Anthony;
Fili, Mohammad;
Han, Changze;
Rahman, Syed A.;
Bicar, Isaiah G. L.;
Gregory, Sullivan;
Helverson, Annika;
Hu, Guiping;
Darbro, Benjamin W.;
Das, Jishnu;
Brown, Grant D.;
Haim, Hillel

Publication type:

Article

Revisiting the invasion paradox: Resistance-richness relationship is driven by augmentation and displacement trends.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012193

By:

Zhu, Yu;
Momeni, Babak

Publication type:

Article

Older adults select different but not simpler strategies than younger adults in risky choice.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012204

By:

Bolenz, Florian;
Pachur, Thorsten

Publication type:

Article

Regulatory properties of transcription factors with diverse mechanistic function.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012194

By:

Ali, Md Zulfikar;
Guharajan, Sunil;
Parisutham, Vinuselvi;
Brewster, Robert C.

Publication type:

Article

Zero-shot denoising of microscopy images recorded at high-resolution limits.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012192

By:

Salwig, Sebastian;
Drefs, Jakob;
Lücke, Jörg

Publication type:

Article

Reliable ligand discrimination in stochastic multistep kinetic proofreading: First passage time vs. product counting strategies.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012183

By:

Li, Xiangting;
Chou, Tom

Publication type:

Article

Strong association between genomic 3D structure and CRISPR cleavage efficiency.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012214

By:

Bergman, Shaked;
Tuller, Tamir

Publication type:

Article

Mechanistic computational modeling of monospecific and bispecific antibodies targeting interleukin-6/8 receptors.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012157

By:

Ray, Christina M. P.;
Yang, Huilin;
Spangler, Jamie B.;
Mac Gabhann, Feilim

Publication type:

Article

Machine learning prediction of malaria vaccine efficacy based on antibody profiles.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012131

By:

Wistuba-Hamprecht, Jacqueline;
Reuter, Bernhard;
Fendel, Rolf;
Hoffman, Stephen L.;
Campo, Joseph J.;
Felgner, Philip L.;
Kremsner, Peter G.;
Mordmüller, Benjamin;
Pfeifer, Nico

Publication type:

Article

Modeling dynamics of acute HIV infection incorporating density-dependent cell death and multiplicity of infection.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012129

By:

Mainou, Ellie;
Ribeiro, Ruy M.;
Conway, Jessica M.

Publication type:

Article

Beyond homogeneity: Assessing the validity of the Michaelis–Menten rate law in spatially heterogeneous environments.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012205

By:

Shin, Seolah;
Chae, Seok Joo;
Lee, Seunggyu;
Kim, Jae Kyoung

Publication type:

Article

Ten recommendations for hosting a Diversity, Equity, Inclusion, and Justice (DEIJ) journal club.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1012166

By:

Díaz, Roberto Efraín;
Wankowicz, Stephanie A.

Publication type:

Article