Works matching IS 1553734X AND DT 2024 AND VI 20 AND IP 12

Results: 76

Systematic benchmarking of deep-learning methods for tertiary RNA structure prediction.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012715

By:

Bahai, Akash;
Kwoh, Chee Keong;
Mu, Yuguang;
Li, Yinghui

Publication type:

Article

BharatSim: An agent-based modelling framework for India.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012682

By:

Cherian, Philip;
Kshirsagar, Jayanta;
Neekhra, Bhavesh;
Deshkar, Gaurav;
Hayatnagarkar, Harshal;
Kapoor, Kshitij;
Kaski, Chandrakant;
Kathar, Ganesh;
Khandekar, Swapnil;
Mookherjee, Saurabh;
Ninawe, Praveen;
Noronha, Riz Fernando;
Ranka, Pranjal;
Sinha, Vaibhhav;
Vinod, Tina;
Yadav, Chhaya;
Gupta, Debayan;
Menon, Gautam I.

Publication type:

Article

Orchard: Building large cancer phylogenies using stochastic combinatorial search.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012653

By:

Kulman, Ethan;
Kuang, Rui;
Morris, Quaid

Publication type:

Article

Marked point process variational autoencoder with applications to unsorted spiking activities.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012620

By:

Shibue, Ryohei;
Iwata, Tomoharu

Publication type:

Article

Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012579

By:

Orcales, Faye;
Moctezuma Tan, Lucy;
Johnson-Hagler, Meris;
Suntay, John Matthew;
Ali, Jameel;
Recto, Kristiene;
Glenn, Phelan;
Pennings, Pleuni

Publication type:

Article

Therapeutic dose prediction of α5-GABA receptor modulation from simulated EEG of depression severity.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012693

By:

Guet-McCreight, Alexandre;
Mazza, Frank;
Prevot, Thomas D.;
Sibille, Etienne;
Hay, Etay

Publication type:

Article

The Burr distribution as a model for the delay between key events in an individual's infection history.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012041

By:

Jamieson, Nyall;
Charalambous, Christiana;
Schultz, David M.;
Hall, Ian

Publication type:

Article

Cancer molecular subtyping using limited multi-omics data with missingness.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012710

By:

Bu, Yongqi;
Liang, Jiaxuan;
Li, Zhen;
Wang, Jianbo;
Wang, Jun;
Yu, Guoxian

Publication type:

Article

Deciphering regulatory architectures of bacterial promoters from synthetic expression patterns.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012697

By:

Pan, Rosalind Wenshan;
Röschinger, Tom;
Faizi, Kian;
Garcia, Hernan G.;
Phillips, Rob

Publication type:

Article

Computational Analysis of MDR1 Variants Predicts Effect on Cancer Cells via their Effect on mRNA Folding.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012685

By:

Gutman, Tal;
Tuller, Tamir

Publication type:

Article

Properties of winning Iterated Prisoner's Dilemma strategies.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012644

By:

Glynatsi, Nikoleta E.;
Knight, Vincent;
Harper, Marc

Publication type:

Article

Estimating the distribution of parameters in differential equations with repeated cross-sectional data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012696

By:

Jo, Hyeontae;
Cho, Sung Woong;
Hwang, Hyung Ju

Publication type:

Article

Estimating the time-varying effective reproduction number via Cycle Threshold-based Transformer.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012694

By:

Zhang, Xin-Yu;
Yu, Lan-Lan;
Wang, Wei-Yi;
Sun, Gui-Quan;
Lv, Jian-Cheng;
Zhou, Tao;
Liu, Quan-Hui

Publication type:

Article

Extracting interpretable signatures of whole-brain dynamics through systematic comparison.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012692

By:

Bryant, Annie G.;
Aquino, Kevin;
Parkes, Linden;
Fornito, Alex;
Fulcher, Ben D.

Publication type:

Article

Machine learning mathematical models for incidence estimation during pandemics.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012687

By:

Fajardo-Fontiveros, Oscar;
Mattei, Mattia;
Burgio, Giulio;
Granell, Clara;
Gómez, Sergio;
Arenas, Alex;
Sales-Pardo, Marta;
Guimerà, Roger

Publication type:

Article

Adolescent and adult mice use both incremental reinforcement learning and short term memory when learning concurrent stimulus-action associations.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012667

By:

Chase, Juliana;
Xia, Liyu;
Tai, Lung-Hao;
Lin, Wan Chen;
Collins, Anne G. E.;
Wilbrecht, Linda

Publication type:

Article

A multivalent binding model infers antibody Fc species from systems serology.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012663

By:

Abraham, Armaan A.;
Tan, Zhixin Cyrillus;
Shrestha, Priyanka;
Bozich, Emily R.;
Meyer, Aaron S.

Publication type:

Article

Surveillance for TB drug resistance using routine rapid diagnostic testing data: Methodological development and application in Brazil.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012662

By:

Baum, Sarah E.;
Pelissari, Daniele M.;
Dockhorn Costa, Fernanda;
Harada, Luiza O.;
Sanchez, Mauro;
Bartholomay, Patricia;
Cohen, Ted;
Castro, Marcia C.;
Menzies, Nicolas A.

Publication type:

Article

Integration of partially observed multimodal and multiscale neural signals for estimating a neural circuit using dynamic causal modeling.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012655

By:

Kang, Jiyoung;
Park, Hae-Jeong

Publication type:

Article

Multicellular model of neuroblastoma proposes unconventional therapy based on multiple roles of p53.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012648

By:

Wertheim, Kenneth Y.;
Chisholm, Robert;
Richmond, Paul;
Walker, Dawn

Publication type:

Article

Sensitivity analysis of closed-loop one-chamber and four-chamber models with baroreflex.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012377

By:

Tlałka, Karolina;
Saxton, Harry;
Halliday, Ian;
Xu, Xu;
Narracott, Andrew;
Taylor, Daniel;
Malawski, Maciej

Publication type:

Article

Predicting the infecting dengue serotype from antibody titre data using machine learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012188

By:

Cracknell Daniels, Bethan;
Buddhari, Darunee;
Hunsawong, Taweewun;
Iamsirithaworn, Sopon;
Farmer, Aaron R.;
Cummings, Derek A. T.;
Anderson, Kathryn B.;
Dorigatti, Ilaria

Publication type:

Article

Evaluation and comparison of methods for neuronal parameter optimization using the Neuroptimus software framework.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012039

By:

Mohácsi, Máté;
Török, Márk Patrik;
Sáray, Sára;
Tar, Luca;
Farkas, Gábor;
Káli, Szabolcs

Publication type:

Article

A mathematical model of plasmin-mediated fibrinolysis of single fibrin fibers.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012684

By:

Ouedraogo, Roukayatou R.;
Sowers, Hannah K.;
Lynch, Spencer R.;
Hudson, Nathan E.;
Bannish, Brittany E.

Publication type:

Article

A computational model for angular velocity integration in a locust heading circuit.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012155

By:

Pabst, Kathrin;
Gkanias, Evripidis;
Webb, Barbara;
Homberg, Uwe;
Endres, Dominik

Publication type:

Article

Optimisation strategies for directed evolution without sequencing.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012695

By:

James, Jessica;
Towers, Sebastian;
Foerster, Jakob;
Steel, Harrison

Publication type:

Article

Evolution of cooperation in multichannel games on multiplex networks.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012678

By:

Basak, Amit;
Sengupta, Supratim

Publication type:

Article

Predicting lung aging using scRNA-Seq data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012632

By:

Song, Qi;
Singh, Alex;
McDonough, John E.;
Adams, Taylor S.;
Vos, Robin;
De Man, Ruben;
Myers, Greg;
Ceulemans, Laurens J.;
Vanaudenaerde, Bart M.;
Wuyts, Wim A.;
Yan, Xiting;
Schuppe, Jonas;
Hagood, James S.;
Kaminski, Naftali;
Bar-Joseph, Ziv

Publication type:

Article

A framework for modelling desert locust population dynamics and large-scale dispersal.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012562

By:

Retkute, Renata;
Thurston, William;
Cressman, Keith;
Gilligan, Christopher A.

Publication type:

Article

scMoMtF: An interpretable multitask learning framework for single-cell multi-omics data analysis.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012679

By:

Lan, Wei;
Ling, Tongsheng;
Chen, Qingfeng;
Zheng, Ruiqing;
Li, Min;
Pan, Yi

Publication type:

Article

Response to comment on: Toward an optimal contraception dosing strategy.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012649

By:

Gavina, Brenda Lyn A.;
de los Reyes V, Aurelio A.;
Olufsen, Mette S.;
Lenhart, Suzanne;
Ottesen, Johnny T.

Publication type:

Article

Hands-on training about data clustering with orange data mining toolbox.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012574

By:

Demšar, Janez;
Zupan, Blaž

Publication type:

Article

Comment on: Toward an optimal contraception dosing strategy.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012398

By:

Benagiano, Giuseppe;
Genazzani, Andrea R.;
Grandi, Giovanni;
Guo, Sun-Wei;
Habiba, Marwan

Publication type:

Article

Randomness as a driver of inactivity in social groups.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012668

By:

Bernadou, Abel;
Jeanson, Raphaël

Publication type:

Article

In–silico simultaneous respiratory and circulatory measurement during voluntary breathing, exercise, and mental stress: A computational approach.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012645

By:

Iwamoto, Masami;
Hirabayashi, Satoko;
Atsumi, Noritoshi

Publication type:

Article

Model supports asymmetric regulation across the intercellular junction for collective cell polarization.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012216

By:

Levandosky, Katherine;
Copos, Calina

Publication type:

Article

Dopamine facilitates the response to glutamatergic inputs in astrocyte cell models.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012688

By:

Bezerra, Thiago Ohno;
Roque, Antonio C.

Publication type:

Article

Neuro-cognitive multilevel causal modeling: A framework that bridges the explanatory gap between neuronal activity and cognition.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012674

By:

Grosse-Wentrup, Moritz;
Kumar, Akshey;
Meunier, Anja;
Zimmer, Manuel

Publication type:

Article

Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012630

By:

Zunker, Henrik;
Schmieding, René;
Kerkmann, David;
Schengen, Alain;
Diexer, Sophie;
Mikolajczyk, Rafael;
Meyer-Hermann, Michael;
Kühn, Martin J.

Publication type:

Article

Adapting to time: Why nature may have evolved a diverse set of neurons.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012673

By:

Habashy, Karim G.;
Evans, Benjamin D.;
Goodman, Dan F. M.;
Bowers, Jeffrey S.

Publication type:

Article

Tree polynomials identify a link between co-transcriptional R-loops and nascent RNA folding.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012669

By:

Liu, Pengyu;
Lusk, Jacob;
Jonoska, Nataša;
Vázquez, Mariel

Publication type:

Article

ClustAll: An R package for patient stratification in complex diseases.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012656

By:

Ortega-Legarreta, Asier;
Palomino-Echeverria, Sara;
Huergo, Estefania;
Lagani, Vincenzo;
Kiani, Narsis A.;
Rautou, Pierre-Emmanuel;
Picola, Nuria Planell;
Tegner, Jesper;
Gomez-Cabrero, David

Publication type:

Article

Advanced vision transformers and open-set learning for robust mosquito classification: A novel approach to entomological studies.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012654

By:

Karim, Ahmed Akib Jawad;
Mahmud, Muhammad Zawad;
Khan, Riasat

Publication type:

Article

Mechanical network equivalence between the katydid and mammalian inner ears.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012641

By:

Celiker, Emine;
Woodrow, Charlie;
Guadayol, Òscar;
Davranoglou, Leonidas-Romanos;
Schlepütz, Christian M.;
Mortimer, Beth;
Taylor, Graham K.;
Humphries, Stuart;
Montealegre-Z, Fernando

Publication type:

Article

Neural networks with optimized single-neuron adaptation uncover biologically plausible regularization.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012567

By:

Geadah, Victor;
Horoi, Stefan;
Kerg, Giancarlo;
Wolf, Guy;
Lajoie, Guillaume

Publication type:

Article

A multi-scale study of thalamic state-dependent responsiveness.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012262

By:

Overwiening, Jorin;
Tesler, Federico;
Guarino, Domenico;
Destexhe, Alain

Publication type:

Article

Hierarchical marker genes selection in scRNA-seq analysis.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012643

By:

Sun, Yutong;
Qiu, Peng

Publication type:

Article

Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012407

By:

Zuniga, Nathan R.;
Earls, Noah E.;
Denos, Ariel E. A.;
Elison, Jared M.;
Jones, Benjamin S.;
Smith, Ethan G.;
Moran, Noah G.;
Broce, Katie L.;
Romero, Gerome M.;
Hyer, Chad D.;
Wagstaff, Kimberly B.;
Almughamsi, Haifa M.;
Transtrum, Mark K.;
Price, John C.

Publication type:

Article

Uncovering population contributions to the extracellular potential in the mouse visual system using Laminar Population Analysis.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1011830

By:

Rimehaug, Atle E.;
Dale, Anders M.;
Arkhipov, Anton;
Einevoll, Gaute T.

Publication type:

Article

Bacterial clustering amplifies the reshaping of eutrophic plumes around marine particles: A hybrid data-driven model.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 12, p. 1, doi. 10.1371/journal.pcbi.1012660

By:

Kapellos, George E.;
Eberl, Hermann J.;
Kalogerakis, Nicolas;
Doyle, Patrick S.;
Paraskeva, Christakis A.

Publication type:

Article