Works matching IS 1553734X AND DT 2024 AND VI 20 AND IP 10

Results: 62

Gene signatures for cancer research: A 25-year retrospective and future avenues.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012512

By:

Liu, Wei;
He, Huaqin;
Chicco, Davide

Publication type:

Article

A novel classification framework for genome-wide association study of whole brain MRI images using deep learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012527

By:

Yu, Shaojun;
Wu, Junjie;
Shao, Yumeng;
Qiu, Deqiang;
Qin, Zhaohui S.

Publication type:

Article

Ten simple rules to bridge ecology and palaeoecology by publishing outside palaeoecological journals.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012487

By:

Schafstall, Nick;
Benito, Xavier;
Brugger, Sandra O.;
Davies, Althea L.;
Ellis, Erle;
Pla-Rabes, Sergi;
Bonk, Alicja;
Bunting, M. Jane;
Chambers, Frank M.;
Flantua, Suzette G. A.;
Fletcher, Tamara L.;
Greiser, Caroline;
Hernández, Armand;
Gwinneth, Benjamin;
Koren, Gerbrand;
Marcisz, Katarzyna;
Montoya, Encarni;
Quesada-Román, Adolfo;
Ratnayake, Amila S.;
Sabatier, Pierre

Publication type:

Article

Regularizing hyperparameters of interacting neural signals in the mouse cortex reflect states of arousal.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012478

By:

Lyamzin, Dmitry R.;
Alamia, Andrea;
Abdolrahmani, Mohammad;
Aoki, Ryo;
Benucci, Andrea

Publication type:

Article

Inference and design of antibody specificity: From experiments to models and back.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012522

By:

Fernandez-de-Cossio-Diaz, Jorge;
Uguzzoni, Guido;
Ricard, Kévin;
Anselmi, Francesca;
Nizak, Clément;
Pagnani, Andrea;
Rivoire, Olivier

Publication type:

Article

Dynamics of morphogen source formation in a growing tissue.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012508

By:

Ho, Richard D. J. G.;
Kishi, Kasumi;
Majka, Maciej;
Kicheva, Anna;
Zagorski, Marcin

Publication type:

Article

Roles and interplay of reinforcement-based and error-based processes during reaching and gait in neurotypical adults and individuals with Parkinson's disease.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012474

By:

Roth, Adam M.;
Buggeln, John H.;
Hoh, Joanna E.;
Wood, Jonathan M.;
Sullivan, Seth R.;
Ngo, Truc T.;
Calalo, Jan A.;
Lokesh, Rakshith;
Morton, Susanne M.;
Grill, Stephen;
Jeka, John J.;
Carter, Michael J.;
Cashaback, Joshua G. A.

Publication type:

Article

Emergent order in epithelial sheets by interplay of cell divisions and cell fate regulation.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012465

By:

Greulich, Philip

Publication type:

Article

Human motor learning dynamics in high-dimensional tasks.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012455

By:

Kamboj, Ankur;
Ranganathan, Rajiv;
Tan, Xiaobo;
Srivastava, Vaibhav

Publication type:

Article

Bayesian inference of state feedback control parameters for f<sub>o</sub> perturbation responses in cerebellar ataxia.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011986

By:

Gaines, Jessica L.;
Kim, Kwang S.;
Parrell, Ben;
Ramanarayanan, Vikram;
Pongos, Alvincé L.;
Nagarajan, Srikantan S.;
Houde, John F.

Publication type:

Article

EEG microstate transition cost correlates with task demands.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012521

By:

Barzon, Giacomo;
Ambrosini, Ettore;
Vallesi, Antonino;
Suweis, Samir

Publication type:

Article

A diel multi-tissue genome-scale metabolic model of Vitis vinifera.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012506

By:

Sampaio, Marta;
Rocha, Miguel;
Dias, Oscar

Publication type:

Article

De novo sensorimotor learning through reuse of movement components.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012492

By:

Gabriel, George;
Mushtaq, Faisal;
Morehead, J. Ryan

Publication type:

Article

Compression-based inference of network motif sets.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012460

By:

Bénichou, Alexis;
Masson, Jean-Baptiste;
Vestergaard, Christian L.

Publication type:

Article

Bayesian polynomial neural networks and polynomial neural ordinary differential equations.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012414

By:

Fronk, Colby;
Yun, Jaewoong;
Singh, Prashant;
Petzold, Linda

Publication type:

Article

Successful cardiac resynchronization therapy reduces negative septal work in patient-specific models of dyssynchronous heart failure.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012150

By:

Craine, Amanda;
Krishnamurthy, Adarsh;
Villongco, Christopher T.;
Vincent, Kevin;
Krummen, David E.;
Narayan, Sanjiv M.;
Kerckhoffs, Roy C. P.;
Omens, Jeffrey H.;
Contijoch, Francisco;
McCulloch, Andrew D.

Publication type:

Article

BoReMi: Bokeh-based jupyter-interface for registering spatio-molecular data to related microscopy images.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012504

By:

Ishar, Jaspreet;
Tam, Yee Man;
Mages, Simon;
Klughammer, Johanna

Publication type:

Article

RNAtango: Analysing and comparing RNA 3D structures via torsional angles.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012500

By:

Mackowiak, Marta;
Adamczyk, Bartosz;
Szachniuk, Marta;
Zok, Tomasz

Publication type:

Article

The optimal spatially-dependent control measures to effectively and economically eliminate emerging infectious diseases.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012498

By:

Xia, Fan;
Xiao, Yanni;
Ma, Junling

Publication type:

Article

Conditional probabilistic diffusion model driven synthetic radiogenomic applications in breast cancer.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012490

By:

Chen, Lianghong;
Huang, Zi Huai;
Sun, Yan;
Domaratzki, Mike;
Liu, Qian;
Hu, Pingzhao

Publication type:

Article

Reverse-engineered models reveal differential membrane properties of autonomic and cutaneous unmyelinated fibers.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012475

By:

Thio, Brandon J.;
Titus, Nathan D.;
Pelot, Nicole A.;
Grill, Warren M.

Publication type:

Article

A flexible generative algorithm for growing in silico placentas.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012470

By:

de Oliveira, Diana C.;
Cheikh Sleiman, Hani;
Payette, Kelly;
Hutter, Jana;
Story, Lisa;
Hajnal, Joseph V.;
Alexander, Daniel C.;
Shipley, Rebecca J.;
Slator, Paddy J.

Publication type:

Article

Probing the link between vision and language in material perception using psychophysics and unsupervised learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012481

By:

Liao, Chenxi;
Sawayama, Masataka;
Xiao, Bei

Publication type:

Article

Quantitative evaluation of DNA damage repair dynamics to elucidate predictors of autism vs. cancer in individuals with germline PTEN variants.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012449

By:

Wei, Ruipeng;
Hitomi, Masahiro;
Sadler, Tammy;
Yehia, Lamis;
Calvetti, Daniela;
Scott, Jacob;
Eng, Charis

Publication type:

Article

The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012403

By:

Lause, Jan;
Berens, Philipp;
Kobak, Dmitry

Publication type:

Article

Quantitative modeling of signaling in aggressive B cell lymphoma unveils conserved core network.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012488

By:

Klinger, Bertram;
Rausch, Isabel;
Sieber, Anja;
Kutz, Helmut;
Kruse, Vanessa;
Kirchner, Marieluise;
Mertins, Philipp;
Kieser, Arnd;
Blüthgen, Nils;
Kube, Dieter

Publication type:

Article

Why aphid virus retention needs more attention: Modelling aphid behaviour and virus manipulation in non-persistent plant virus transmission.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012479

By:

Falla, Elin K.;
Cunniffe, Nik J.

Publication type:

Article

Building, benchmarking, and exploring perturbative maps of transcriptional and morphological data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012463

By:

Celik, Safiye;
Hütter, Jan-Christian;
Carlos, Sandra Melo;
Lazar, Nathan H.;
Mohan, Rahul;
Tillinghast, Conor;
Biancalani, Tommaso;
Fay, Marta M.;
Earnshaw, Berton A.;
Haque, Imran S.

Publication type:

Article

Spatial distribution of poultry farms using point pattern modelling: A method to address livestock environmental impacts and disease transmission risks.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011980

By:

Dupas, Marie-Cécile;
Pinotti, Francesco;
Joshi, Chaitanya;
Joshi, Madhvi;
Thanapongtharm, Weerapong;
Dhingra, Madhur;
Blake, Damer;
Tomley, Fiona;
Gilbert, Marius;
Fournié, Guillaume

Publication type:

Article

Detectability of runs of homozygosity is influenced by analysis parameters and population-specific demographic history.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012566

By:

Silva, Gabriel A. A.;
Harder, Avril M.;
Kirksey, Kenneth B.;
Mathur, Samarth;
Willoughby, Janna R.

Publication type:

Article

Spatiotemporal orchestration of calcium-cAMP oscillations on AKAP/AC nanodomains is governed by an incoherent feedforward loop.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012564

By:

Qiao, Lingxia;
Getz, Michael;
Gross, Ben;
Tenner, Brian;
Zhang, Jin;
Rangamani, Padmini

Publication type:

Article

Structural influences on synaptic plasticity: The role of presynaptic connectivity in the emergence of E/I co-tuning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012510

By:

Giannakakis, Emmanouil;
Vinogradov, Oleg;
Buendía, Victor;
Levina, Anna

Publication type:

Article

Enhancing insights in sexually transmitted infection mapping: Syphilis in Forsyth County, North Carolina, a case study.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012464

By:

Fox, Lani;
Miller, William C.;
Gesink, Dionne;
Doherty, Irene;
Serre, Marc

Publication type:

Article

Autistic traits foster effective curiosity-driven exploration.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012453

By:

Poli, Francesco;
Koolen, Maran;
Velázquez-Vargas, Carlos A.;
Ramos-Sanchez, Jessica;
Meyer, Marlene;
Mars, Rogier B.;
Rommelse, Nanda;
Hunnius, Sabine

Publication type:

Article

A Computational Framework for Understanding the Impact of Prior Experiences on Pain Perception and Neuropathic Pain.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012097

By:

Ramne, Malin;
Sensinger, Jon

Publication type:

Article

Learning probability distributions of sensory inputs with Monte Carlo predictive coding.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012532

By:

Oliviers, Gaspard;
Bogacz, Rafal;
Meulemans, Alexander

Publication type:

Article

Integrating information from historical data into mechanistic models for influenza forecasting.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012523

By:

Andronico, Alessio;
Paireau, Juliette;
Cauchemez, Simon

Publication type:

Article

Mcadet: A feature selection method for fine-resolution single-cell RNA-seq data based on multiple correspondence analysis and community detection.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012560

By:

Cui, Saishi;
Nassiri, Sina;
Zakeri, Issa

Publication type:

Article

Reinforcement learning when your life depends on it: A neuro-economic theory of learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012554

By:

Jiang, Jiamu;
Foyardg, Emilie;
van Rossumg, Mark C. W.

Publication type:

Article

Competitive plasticity to reduce the energetic costs of learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012553

By:

van Rossum, Mark C. W.;
Pache, Aaron

Publication type:

Article

Metabolic modelling as a powerful tool to identify critical components of Pneumocystis growth medium.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012545

By:

Nev, Olga A.;
Zamaraeva, Elena;
De Oliveira, Romain;
Ryzhkov, Ilia;
Duvenage, Lucian;
Abou-Jaoudé, Wassim;
Ouattara, Djomangan Adama;
Hoving, Jennifer Claire;
Gudelj, Ivana;
Brown, Alistair J. P.

Publication type:

Article

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012520

By:

Charniga, Kelly;
Park, Sang Woo;
Akhmetzhanov, Andrei R.;
Cori, Anne;
Dushoff, Jonathan;
Funk, Sebastian;
Gostic, Katelyn M.;
Linton, Natalie M.;
Lison, Adrian;
Overton, Christopher E.;
Pulliam, Juliet R. C.;
Ward, Thomas;
Cauchemez, Simon;
Abbott, Sam

Publication type:

Article

Non-genetic differences underlie variability in proliferation among esophageal epithelial clones.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012360

By:

Reyes Hueros, Raúl A.;
Gier, Rodrigo A.;
Shaffer, Sydney M.

Publication type:

Article

IsRNAcirc: 3D structure prediction of circular RNAs based on coarse-grained molecular dynamics simulation.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012293

By:

Jiang, Haolin;
Xu, Yulian;
Tong, Yunguang;
Zhang, Dong;
Zhou, Ruhong

Publication type:

Article

Tuning collective behaviour in zebrafish with genetic modification.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012034

By:

Yang, Yushi;
Kawafi, Abdelwahab;
Tong, Qiao;
Kague, Erika;
Hammond, Chrissy L.;
Royall, C. Patrick

Publication type:

Article

TIBA: A web application for the visual analysis of temporal occurrences, interactions, and transitions of animal behavior.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012425

By:

Kraus, Nicolai;
Aichem, Michael;
Klein, Karsten;
Lein, Etienne;
Jordan, Alex;
Schreiber, Falk

Publication type:

Article

Just-in-time: Gaze guidance in natural behavior.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012529

By:

Keshava, Ashima;
Nezami, Farbod Nosrat;
Neumann, Henri;
Izdebski, Krzysztof;
Schüler, Thomas;
König, Peter

Publication type:

Article

iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012546

By:

Sastry, Anand V.;
Yuan, Yuan;
Poudel, Saugat;
Rychel, Kevin;
Yoo, Reo;
Lamoureux, Cameron R.;
Li, Gaoyuan;
Burrows, Joshua T.;
Chauhan, Siddharth;
Haiman, Zachary B.;
Al Bulushi, Tahani;
Seif, Yara;
Palsson, Bernhard O.;
Zielinski, Daniel C.

Publication type:

Article

Modelling the impact of vaccination on COVID-19 in African countries.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012456

By:

Mathebula, Dephney;
Amankwah, Abigail;
Amouzouvi, Kossi;
Assamagan, Kétévi Adiklè;
Azote, Somiealo;
Fajemisin, Jesutofunmi Ayo;
Fankam Fankame, Jean Baptiste;
Guga, Aluwani;
Kamwela, Moses;
Kanduza, Mulape Mutule;
Mabote, Toivo Samuel;
Macucule, Francisco Fenias;
Muronga, Azwinndini;
Njeri, Ann;
Oluwole, Michael Olusegun;
Paulo, Cláudio Moisés

Publication type:

Article

On the identification of differentially-active transcription factors from ATAC-seq data.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011971

By:

Gerbaldo, Felix Ezequiel;
Sonder, Emanuel;
Fischer, Vincent;
Frei, Selina;
Wang, Jiayi;
Gapp, Katharina;
Robinson, Mark D.;
Germain, Pierre-Luc

Publication type:

Article