Works matching IS 1553734X AND DT 2024 AND VI 20 AND IP 1

Results: 62

Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011832

By:

van Boven, Michiel;
van Dorp, Christiaan H.;
Westerhof, Ilse;
Jaddoe, Vincent;
Heuvelman, Valerie;
Duijts, Liesbeth;
Fourie, Elandri;
Sluiter-Post, Judith;
van Houten, Marlies A.;
Badoux, Paul;
Euser, Sjoerd;
Herpers, Bjorn;
Eggink, Dirk;
de Hoog, Marieke;
Boom, Trisja;
Wildenbeest, Joanne;
Bont, Louis;
Rozhnova, Ganna;
Bonten, Marc J.;
Kretzschmar, Mirjam E.

Publication type:

Article

Radiation necrosis after radiation therapy treatment of brain metastases: A computational approach.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011400

By:

Ocaña-Tienda, Beatriz;
León-Triana, Odelaisy;
Pérez-Beteta, Julián;
Jiménez-Sánchez, Juan;
Pérez-García, Víctor M.

Publication type:

Article

Statistical integration of multi-omics and drug screening data from cell lines.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011809

By:

el Bouhaddani, Said;
Höllerhage, Matthias;
Uh, Hae-Won;
Moebius, Claudia;
Bickle, Marc;
Höglinger, Günter;
Houwing-Duistermaat, Jeanine

Publication type:

Article

Ten simple rules for using large language models in science, version 1.0.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011767

By:

Smith, Gabriel Reuben;
Bello, Carolina;
Bialic-Murphy, Lalasia;
Clark, Emily;
Delavaux, Camille S.;
Fournier de Lauriere, Camille;
van den Hoogen, Johan;
Lauber, Thomas;
Ma, Haozhi;
Maynard, Daniel S.;
Mirman, Matthew;
Mo, Lidong;
Rebindaine, Dominic;
Reek, Josephine Elena;
Werden, Leland K.;
Wu, Zhaofei;
Yang, Gayoung;
Zhao, Qingzhou;
Zohner, Constantin M.;
Crowther, Thomas W.

Publication type:

Article

Postinhibitory excitation in motoneurons can be facilitated by hyperpolarization-activated inward currents: A simulation study.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011487

By:

Schmid, Laura;
Klotz, Thomas;
Röhrle, Oliver;
Powers, Randall K.;
Negro, Francesco;
Yavuz, Utku Ş.

Publication type:

Article

Spatial constraints and stochastic seeding subvert microbial arms race.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011807

By:

Copeland, Raymond;
Zhang, Christopher;
Hammer, Brian K.;
Yunker, Peter J.

Publication type:

Article

Modeling geographic vaccination strategies for COVID-19 in Norway.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011426

By:

Chan, Louis Yat Hin;
Rø, Gunnar;
Midtbø, Jørgen Eriksson;
Di Ruscio, Francesco;
Watle, Sara Sofie Viksmoen;
Juvet, Lene Kristine;
Littmann, Jasper;
Aavitsland, Preben;
Nygård, Karin Maria;
Berg, Are Stuwitz;
Bukholm, Geir;
Kristoffersen, Anja Bråthen;
Engø-Monsen, Kenth;
Engebretsen, Solveig;
Swanson, David;
Palomares, Alfonso Diz-Lois;
Lindstrøm, Jonas Christoffer;
Frigessi, Arnoldo;
de Blasio, Birgitte Freiesleben

Publication type:

Article

AutoEdge-CCP: A novel approach for predicting cancer-associated circRNAs and drugs based on automated edge embedding.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011851

By:

Chen, Yaojia;
Wang, Jiacheng;
Wang, Chunyu;
Zou, Quan

Publication type:

Article

A neural network model for the evolution of learning in changing environments.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011840

By:

Kozielska, Magdalena;
Weissing, Franz J.

Publication type:

Article

Spatial and temporal heterogeneity alter the cost of plasticity in Pristionchus pacificus.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011823

By:

Kalirad, Ata;
Sommer, Ralf J.

Publication type:

Article

Conversion of spikers to bursters in pituitary cell networks: Is it better to disperse for maximum exposure or circle the wagons?

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011811

By:

Fazli, Mehran;
Bertram, Richard

Publication type:

Article

Vision-based collective motion: A locust-inspired reductionist model.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011796

By:

Krongauz, David L.;
Ayali, Amir;
Kaminka, Gal A.

Publication type:

Article

Diffusive mediator feedbacks control the health-to-disease transition of skin inflammation.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011693

By:

Sudo, Maki;
Fujimoto, Koichi

Publication type:

Article

Somnotate: A probabilistic sleep stage classifier for studying vigilance state transitions.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011793

By:

Brodersen, Paul J. N.;
Alfonsa, Hannah;
Krone, Lukas B.;
Blanco-Duque, Cristina;
Fisk, Angus S.;
Flaherty, Sarah J.;
Guillaumin, Mathilde C. C.;
Huang, Yi-Ge;
Kahn, Martin C.;
McKillop, Laura E.;
Milinski, Linus;
Taylor, Lewis;
Thomas, Christopher W.;
Yamagata, Tomoko;
Foster, Russell G.;
Vyazovskiy, Vladyslav V.;
Akerman, Colin J.

Publication type:

Article

Short-term Hebbian learning can implement transformer-like attention.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011843

By:

Ellwood, Ian T.

Publication type:

Article

Transcription factor interactions explain the context-dependent activity of CRX binding sites.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011802

By:

Loell, Kaiser J.;
Friedman, Ryan Z.;
Myers, Connie A.;
Corbo, Joseph C.;
Cohen, Barak A.;
White, Michael A.

Publication type:

Article

Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011795

By:

Lamb, Kieran D.;
Luka, Martha M.;
Saathoff, Megan;
Orton, Richard J.;
Phan, My V. T.;
Cotten, Matthew;
Yuan, Ke;
Robertson, David L.

Publication type:

Article

Ten simple rules for establishing an experimental lab.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011778

By:

Kaiser, Marcus

Publication type:

Article

A genome-wide comprehensive analysis of nucleosome positioning in yeast.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011799

By:

Zeitler, Leo;
André, Kévin;
Alberti, Adriana;
Denby Wilkes, Cyril;
Soutourina, Julie;
Goldar, Arach

Publication type:

Article

Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011794

By:

Papale, Andrea;
Holcman, David

Publication type:

Article

Inferring country-specific import risk of diseases from the world air transportation network.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011775

By:

Klamser, Pascal P.;
Zachariae, Adrian;
Maier, Benjamin F.;
Baranov, Olga;
Jongen, Clara;
Schlosser, Frank;
Brockmann, Dirk

Publication type:

Article

Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011776

By:

Shin, Bryan;
An, Gary;
Cockrell, R. Chase

Publication type:

Article

Integrated meta-analysis of colorectal cancer public proteomic datasets for biomarker discovery and validation.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011828

By:

Robles, Javier;
Prakash, Ananth;
Vizcaíno, Juan Antonio;
Casal, J. Ignacio

Publication type:

Article

Inferred regulons are consistent with regulator binding sequences in E. coli.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011824

By:

Qiu, Sizhe;
Wan, Xinlong;
Liang, Yueshan;
Lamoureux, Cameron;
Akbari, Amir;
Palsson, Bernhard O.;
Zielinski, Daniel C.

Publication type:

Article

Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011816

By:

Louarn, Marine;
Collet, Guillaume;
Barré, Ève;
Fest, Thierry;
Dameron, Olivier;
Siegel, Anne;
Chatonnet, Fabrice

Publication type:

Article

Predicting primate tongue morphology based on geometrical skull matching. A first step towards an application on fossil hominins.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011808

By:

Alvarez, Pablo;
El Mouss, Marouane;
Calka, Maxime;
Belme, Anca;
Berillon, Gilles;
Brige, Pauline;
Payan, Yohan;
Perrier, Pascal;
Vialet, Amélie

Publication type:

Article

FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011786

By:

Chen, Hua-Chang;
Wang, Jing;
Shyr, Yu;
Liu, Qi

Publication type:

Article

Implicit model to capture electrostatic features of membrane environment.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011296

By:

Samanta, Rituparna;
Gray, Jeffrey J.

Publication type:

Article

Functional hierarchies in brain dynamics characterized by signal reversibility in ferret cortex.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011818

By:

Idesis, Sebastian;
Geli, Sebastián;
Faskowitz, Joshua;
Vohryzek, Jakub;
Sanz Perl, Yonatan;
Pieper, Florian;
Galindo-Leon, Edgar;
Engel, Andreas K.;
Deco, Gustavo

Publication type:

Article

PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011790

By:

Ramachandran, Anand;
Lumetta, Steven S.;
Chen, Deming

Publication type:

Article

Revealing and reshaping attractor dynamics in large networks of cortical neurons.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011784

By:

Beer, Chen;
Barak, Omri

Publication type:

Article

Identifying essential factors for energy-efficient walking control across a wide range of velocities in reflex-based musculoskeletal systems.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011771

By:

Koseki, Shunsuke;
Hayashibe, Mitsuhiro;
Owaki, Dai

Publication type:

Article

The structure and robustness of ecological networks with two interaction types.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011770

By:

Domínguez-García, Virginia;
Kéfi, Sonia

Publication type:

Article

A mathematical, classical stratification modeling approach to disentangling the impact of weather on infectious diseases: A case study using spatio-temporally disaggregated Campylobacter surveillance data for England and Wales.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011714

By:

Lo Iacono, Giovanni;
Cook, Alasdair J. C.;
Derks, Gianne;
Fleming, Lora E.;
French, Nigel;
Gillingham, Emma L.;
Gonzalez Villeta, Laura C.;
Heaviside, Clare;
La Ragione, Roberto M.;
Leonardi, Giovanni;
Sarran, Christophe E.;
Vardoulakis, Sotiris;
Senyah, Francis;
van Vliet, Arnoud H. M.;
Nichols, Gordon

Publication type:

Article

Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011018

By:

Grunnill, Martin;
Arino, Julien;
McCarthy, Zachary;
Bragazzi, Nicola Luigi;
Coudeville, Laurent;
Thommes, Edward W.;
Amiche, Amine;
Ghasemi, Abbas;
Bourouiba, Lydia;
Tofighi, Mohammadali;
Asgary, Ali;
Baky-Haskuee, Mortaza;
Wu, Jianhong

Publication type:

Article

Virtual neural network-guided optimization of non-invasive brain stimulation in Alzheimer's disease.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011164

By:

Luppi, Janne J.;
Stam, Cornelis J.;
Scheltens, Philip;
de Haan, Willem

Publication type:

Article

Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011803

By:

An, Hong;
Pires, J. Chris;
Conant, Gavin C.

Publication type:

Article

Controlling target brain regions by optimal selection of input nodes.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011274

By:

Manjunatha, Karan Kabbur Hanumanthappa;
Baron, Giorgia;
Benozzo, Danilo;
Silvestri, Erica;
Corbetta, Maurizio;
Chiuso, Alessandro;
Bertoldo, Alessandra;
Suweis, Samir;
Allegra, Michele

Publication type:

Article

Transformations of sensory information in the brain suggest changing criteria for optimality.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011783

By:

Manning, Tyler S.;
Alexander, Emma;
Cumming, Bruce G.;
DeAngelis, Gregory C.;
Huang, Xin;
Cooper, Emily A.

Publication type:

Article

Tracking conformational transitions of the gonadotropin hormone receptors in a bilayer of (SDPC) poly-unsaturated lipids from all-atom molecular dynamics simulations.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011415

By:

Jardón-Valadez, Eduardo;
Ulloa-Aguirre, Alfredo

Publication type:

Article

Tissue-adjusted pathway analysis of cancer (TPAC): A novel approach for quantifying tumor-specific gene set dysregulation relative to normal tissue.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011717

By:

Frost, H. Robert

Publication type:

Article

Joint representation of molecular networks from multiple species improves gene classification.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011773

By:

Mancuso, Christopher A.;
Johnson, Kayla A.;
Liu, Renming;
Krishnan, Arjun

Publication type:

Article

High-performing neural network models of visual cortex benefit from high latent dimensionality.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011792

By:

Elmoznino, Eric;
Bonner, Michael F.

Publication type:

Article

Systems approach for congruence and selection of cancer models towards precision medicine.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011754

By:

Zou, Jian;
Shah, Osama;
Chiu, Yu-Chiao;
Ma, Tianzhou;
Atkinson, Jennifer M.;
Oesterreich, Steffi;
Lee, Adrian V.;
Tseng, George C.

Publication type:

Article

Adaptive foraging of pollinators fosters gradual tipping under resource competition and rapid environmental change.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011762

By:

Terpstra, Sjoerd;
Marquitti, Flávia M. D.;
Vasconcelos, Vítor V.

Publication type:

Article

Mapping the dynamics of visual feature coding: Insights into perception and integration.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011760

By:

Grootswagers, Tijl;
Robinson, Amanda K.;
Shatek, Sophia M.;
Carlson, Thomas A.

Publication type:

Article

Are we really Bayesian? Probabilistic inference shows sub-optimal knowledge transfer.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011769

By:

Lin, Chin-Hsuan Sophie;
Do, Trang Thuy;
Unsworth, Lee;
Garrido, Marta I.

Publication type:

Article

Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011752

By:

Plank, Michael J.;
Watson, Leighton;
Maclaren, Oliver J.

Publication type:

Article

MEDUSA: A cloud-based tool for the analysis of X-ray diffuse scattering to obtain the bending modulus from oriented membrane stacks.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011749

By:

Himbert, Sebastian;
Gaboo, Dorian;
Brookes, Emre;
Nagle, John F.;
Rheinstädter, Maikel C.

Publication type:

Article

Plasticity of growth laws tunes resource allocation strategies in bacteria.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 1, p. 1, doi. 10.1371/journal.pcbi.1011735

By:

Mukherjee, Avik;
Chang, Yu-Fang;
Huang, Yanqing;
Benites, Nina Catherine;
Ammar, Leander;
Ealy, Jade;
Polk, Mark;
Basan, Markus

Publication type:

Article