Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 6

Results: 60

Supervised learning and model analysis with compositional data.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011240
By:
- Huang, Shimeng;
- Ailer, Elisabeth;
- Kilbertus, Niki;
- Pfister, Niklas
Publication type:
Article
Dynamic recycling of extracellular ATP in human epithelial intestinal cells.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011196
By:
- Saffioti, Nicolas Andres;
- Alvarez, Cora Lilia;
- Bazzi, Zaher;
- Gentilini, María Virginia;
- Gondolesi, Gabriel Eduardo;
- Schwarzbaum, Pablo Julio;
- Schachter, Julieta
Publication type:
Article
Individualized network analysis reveals link between the gut microbiome, diet intervention and Gestational Diabetes Mellitus.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011193
By:
- Liu, Yimeng;
- Amit, Guy;
- Zhao, Xiaolei;
- Wu, Na;
- Li, Daqing;
- Bashan, Amir
Publication type:
Article
Domestic cat nose functions as a highly efficient coiled parallel gas chromatograph.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011119
By:
- Wu, Zhenxing;
- Jiang, Jianbo;
- Lischka, Fritz W.;
- McGrane, Scott J.;
- Porat-Mesenco, Yael;
- Zhao, Kai
Publication type:
Article
Laminar specificity of the auditory perceptual awareness negativity: A biophysical modeling study.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011003
By:
- Fernandez Pujol, Carolina;
- Blundon, Elizabeth G.;
- Dykstra, Andrew R.
Publication type:
Article
Adaptive dynamics of memory-one strategies in the repeated donation game.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010987
By:
- LaPorte, Philip;
- Hilbe, Christian;
- Nowak, Martin A.
Publication type:
Article
Nonlinear eco-evolutionary games with global environmental fluctuations and local environmental feedbacks.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011269
By:
- Jiang, Yishen;
- Wang, Xin;
- Liu, Longzhao;
- Wei, Ming;
- Zhao, Jingwu;
- Zheng, Zhiming;
- Tang, Shaoting
Publication type:
Article
Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011263
By:
- Brett, Tobias S.;
- Bansal, Shweta;
- Rohani, Pejman
Publication type:
Article
Cell-type annotation with accurate unseen cell-type identification using multiple references.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011261
By:
- Xiong, Yi-Xuan;
- Wang, Meng-Guo;
- Chen, Luonan;
- Zhang, Xiao-Fei
Publication type:
Article
Mathematical modeling the order of driver gene mutations in colorectal cancer.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011225
By:
- Li, Lingling;
- Hu, Yulu;
- Xu, Yunshan;
- Tang, Sanyi
Publication type:
Article
Cell to whole organ global sensitivity analysis on a four-chamber heart electromechanics model using Gaussian processes emulators.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011257
By:
- Strocchi, Marina;
- Longobardi, Stefano;
- Augustin, Christoph M.;
- Gsell, Matthias A. F.;
- Petras, Argyrios;
- Rinaldi, Christopher A.;
- Vigmond, Edward J.;
- Plank, Gernot;
- Oates, Chris J.;
- Wilkinson, Richard D.;
- Niederer, Steven A.
Publication type:
Article
Deep learning approaches to landmark detection in tsetse wing images.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011194
By:
- Geldenhuys, Dylan S.;
- Josias, Shane;
- Brink, Willie;
- Makhubele, Mulanga;
- Hui, Cang;
- Landi, Pietro;
- Bingham, Jeremy;
- Hargrove, John;
- Hazelbag, Marijn C.
Publication type:
Article
Feeling lucky? prospective and retrospective cues for sensorimotor confidence.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010740
By:
- Fassold, Marissa E.;
- Locke, Shannon M.;
- Landy, Michael S.
Publication type:
Article
Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011221
By:
- Erdős, Balázs;
- Westerhuis, Johan A.;
- Adriaens, Michiel E.;
- O'Donovan, Shauna D.;
- Xie, Ren;
- Singh-Povel, Cécile M.;
- Smilde, Age K.;
- Arts, Ilja C. W.
Publication type:
Article
Community detection in empirical kinase networks identifies new potential members of signalling pathways.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010459
By:
- Basanta, Celia De Los Angeles Colomina;
- Bazzi, Marya;
- Hijazi, Maruan;
- Bessant, Conrad;
- Cutillas, Pedro R.
Publication type:
Article
Correction: The contribution of the basal ganglia and cerebellum to motor learning: A neuro-computational approach.
Published in:
2023
By:
- Baladron, Javier;
- Vitay, Julien;
- Fietzek, Torsten;
- Hamker, Fred H.
Publication type:
Correction Notice
The biomechanics of chewing and suckling in the infant: A potential mechanism for physiologic metopic suture closure.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011227
By:
- Haravu, Pranav N.;
- Gonzalez, Miguel;
- Nathan, Shelby L.;
- Ross, Callum F.;
- Panagiotopoulou, Olga;
- Reid, Russell R.
Publication type:
Article
Ten simple rules for the sharing of bacterial genotype—Phenotype data on antimicrobial resistance.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011129
By:
- Chindelevitch, Leonid;
- van Dongen, Maarten;
- Graz, Heather;
- Pedrotta, Antonio;
- Suresh, Anita;
- Uplekar, Swapna;
- Jauneikaite, Elita;
- Wheeler, Nicole
Publication type:
Article
Gain modulation and odor concentration invariance in early olfactory networks.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011176
By:
- Marachlian, Emiliano;
- Huerta, Ramón;
- Locatelli, Fernando F.
Publication type:
Article
Learning from the past: A short term forecast method for the COVID-19 incidence curve.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010790
By:
- Morel, Jean-David;
- Morel, Jean-Michel;
- Alvarez, Luis
Publication type:
Article
iPiDA-SWGCN: Identification of piRNA-disease associations based on Supplementarily Weighted Graph Convolutional Network.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011242
By:
- Hou, Jialu;
- Wei, Hang;
- Liu, Bin
Publication type:
Article
Grouping promotes both partnership and rivalry with long memory in direct reciprocity.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011228
By:
- Murase, Yohsuke;
- Baek, Seung Ki
Publication type:
Article
BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011214
By:
- Li, Hongliang;
- Liu, Bin
Publication type:
Article
Knowledge graph embedding for profiling the interaction between transcription factors and their target genes.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011207
By:
- Wu, Yang-Han;
- Huang, Yu-An;
- Li, Jian-Qiang;
- You, Zhu-Hong;
- Hu, Peng-Wei;
- Hu, Lun;
- Leung, Victor C. M.;
- Du, Zhi-Hua
Publication type:
Article
Impact of variability in cell cycle periodicity on cell population dynamics.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011080
By:
- Nowak, Chance M.;
- Quarton, Tyler;
- Bleris, Leonidas
Publication type:
Article
Modeling the sequence dependence of differential antibody binding in the immune response to infectious disease.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010773
By:
- Chowdhury, Robayet;
- Taguchi, Alexander T.;
- Kelbauskas, Laimonas;
- Stafford, Phillip;
- Diehnelt, Chris;
- Zhao, Zhan-Gong;
- Williamson, Phillip C.;
- Green, Valerie;
- Woodbury, Neal W.
Publication type:
Article
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011232
By:
- Skalnik, Christopher J.;
- Cheah, Sean Y.;
- Yang, Mica Y.;
- Wolff, Mattheus B.;
- Spangler, Ryan K.;
- Talman, Lee;
- Morrison, Jerry H.;
- Peirce, Shayn M.;
- Agmon, Eran;
- Covert, Markus W.
Publication type:
Article
Distinguishing between different percolation regimes in noisy dynamic networks with an application to epileptic seizures.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011188
By:
- Zhu, Xiaojing;
- Shappell, Heather;
- Kramer, Mark A.;
- Chu, Catherine J.;
- Kolaczyk, Eric D.
Publication type:
Article
MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011163
By:
- Potgieter, Matthys G.;
- Nel, Andrew J. M.;
- Fortuin, Suereta;
- Garnett, Shaun;
- Wendoh, Jerome M.;
- Tabb, David L.;
- Mulder, Nicola J.;
- Blackburn, Jonathan M.
Publication type:
Article
Opponent learning with different representations in the cortico-basal ganglia pathways can develop obsession-compulsion cycle.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011206
By:
- Sato, Reo;
- Shimomura, Kanji;
- Morita, Kenji
Publication type:
Article
Ten simple rules for organizations to support research data sharing.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011136
By:
- Champieux, Robin;
- Solomonides, Anthony;
- Conte, Marisa;
- Rojevsky, Svetlana;
- Phuong, Jimmy;
- Dorr, David A.;
- Zampino, Elizabeth;
- Wilcox, Adam;
- Carson, Matthew B.;
- Holmes, Kristi
Publication type:
Article
Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011120
By:
- Castro, Leyla Jael;
- Palagi, Patricia M.;
- Beard, Niall;
- Attwood, Teresa K.;
- Brazas, Michelle D.
Publication type:
Article
A model of colour appearance based on efficient coding of natural images.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011117
By:
- Troscianko, Jolyon;
- Osorio, Daniel
Publication type:
Article
Optimizing tuberculosis treatment efficacy: Comparing the standard regimen with Moxifloxacin-containing regimens.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010823
By:
- Budak, Maral;
- Cicchese, Joseph M.;
- Maiello, Pauline;
- Borish, H. Jacob;
- White, Alexander G.;
- Chishti, Harris B.;
- Tomko, Jaime;
- Frye, L. James;
- Fillmore, Daniel;
- Kracinovsky, Kara;
- Sakal, Jennifer;
- Scanga, Charles A.;
- Lin, Philana Ling;
- Dartois, Véronique;
- Linderman, Jennifer J.;
- Flynn, JoAnne L.;
- Kirschner, Denise E.
Publication type:
Article
Stochastic simulations of self-organized elastogenesis in the developing lung.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011219
By:
- Fan, Xiru;
- Valenzuela, Cristian;
- Zhao, Weijing;
- Chen, Zi;
- Wang, Dong;
- Mentzer, Steven J.
Publication type:
Article
Recall DNA methylation levels at low coverage sites using a CNN model in WGBS.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011205
By:
- Luo, Ximei;
- Wang, Yansu;
- Zou, Quan;
- Xu, Lei
Publication type:
Article
Correction: Neural adaptation and fractional dynamics as a window to underlying neural excitability.
Published in:
2023
By:
- Lundstrom, Brian Nils;
- Richner, Thomas J.
Publication type:
Correction Notice
Optimal density of bacterial cells.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011177
By:
- Pang, Tin Yau;
- Lercher, Martin J.
Publication type:
Article
An information theoretic method to resolve millisecond-scale spike timing precision in a comprehensive motor program.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011170
By:
- Putney, Joy;
- Niebur, Tobias;
- Wood, Leo;
- Conn, Rachel;
- Sponberg, Simon
Publication type:
Article
Spatial dynamics of malaria transmission.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010684
By:
- Wu, Sean L.;
- Henry, John M.;
- Citron, Daniel T.;
- Mbabazi Ssebuliba, Doreen;
- Nakakawa Nsumba, Juliet;
- Sánchez C., Héctor M.;
- Brady, Oliver J.;
- Guerra, Carlos A.;
- García, Guillermo A.;
- Carter, Austin R.;
- Ferguson, Heather M.;
- Afolabi, Bakare Emmanuel;
- Hay, Simon I.;
- Reiner Jr., Robert C.;
- Kiware, Samson;
- Smith, David L.
Publication type:
Article
Mechanisms of human dynamic object recognition revealed by sequential deep neural networks.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011169
By:
- Sörensen, Lynn K. A.;
- Bohté, Sander M.;
- de Jong, Dorina;
- Slagter, Heleen A.;
- Scholte, H. Steven
Publication type:
Article
coiaf: Directly estimating complexity of infection with allele frequencies.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010247
By:
- Paschalidis, Aris;
- Watson, Oliver J.;
- Aydemir, Ozkan;
- Verity, Robert;
- Bailey, Jeffrey A.
Publication type:
Article
Mslar: Microbial synthetic lethal and rescue database.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011218
By:
- Zhu, Sen-Bin;
- Jiang, Qian-Hu;
- Chen, Zhi-Guo;
- Zhou, Xiang;
- Jin, Yan-ting;
- Deng, Zixin;
- Guo, Feng-Biao
Publication type:
Article
A dynamic calcium-force relationship model for sag behavior in fast skeletal muscle.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011178
By:
- Kim, Hojeong;
- Heckman, Charles J.
Publication type:
Article
Teaching students to R<sup>3</sup>eason, not merely to solve problem sets: The role of philosophy and visual data communication in accessible data science education.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011160
By:
- Ciubotariu, Ilinca I.;
- Bosch, Gundula
Publication type:
Article
Computational simulations of tumor growth and treatment response: Benefits of high-frequency, low-dose drug regimens and concurrent vascular normalization.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011131
By:
- Nikmaneshi, Mohammad R.;
- Jain, Rakesh K.;
- Munn, Lance L.
Publication type:
Article
Environmental dynamics shape perceptual decision bias.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011104
By:
- Charlton, Julie A.;
- Młynarski, Wiktor F.;
- Bai, Yoon H.;
- Hermundstad, Ann M.;
- Goris, Robbe L. T.
Publication type:
Article
Latent Dirichlet Allocation modeling of environmental microbiomes.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011075
By:
- Kim, Anastasiia;
- Sevanto, Sanna;
- Moore, Eric R.;
- Lubbers, Nicholas
Publication type:
Article
Hebbian learning with elasticity explains how the spontaneous motor tempo affects music performance synchronization.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011154
By:
- Roman, Iran R.;
- Roman, Adrian S.;
- Kim, Ji Chul;
- Large, Edward W.
Publication type:
Article
HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph human mtDNA haplogroup inference.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011148
By:
- Rubin, Joshua Daniel;
- Vogel, Nicola Alexandra;
- Gopalakrishnan, Shyam;
- Sackett, Peter Wad;
- Renaud, Gabriel
Publication type:
Article