Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 3
Results: 69
BiComp-DTA: Drug-target binding affinity prediction through complementary biological-related and compression-based featurization approach.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011036
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- Article
JASPER: A fast genome polishing tool that improves accuracy of genome assemblies.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011032
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A new method for the joint estimation of instantaneous reproductive number and serial interval during epidemics.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011021
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Predicting regrowth of low-grade gliomas after radiotherapy.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011002
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chiLife: An open-source Python package for in silico spin labeling and integrative protein modeling.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010834
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Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011010
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Network models of protein phosphorylation, acetylation, and ubiquitination connect metabolic and cell signaling pathways in lung cancer.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010690
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Development of a scoring function for comparing simulated and experimental tumor spheroids.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010471
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Correction: A musculoskeletal finite element model of rat knee joint for evaluating cartilage biomechanics during gait.
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- 2023
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- Correction Notice
Validation framework for epidemiological models with application to COVID-19 models.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010968
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Modelling quantitative fungicide resistance and breakdown of resistant cultivars: Designing integrated disease management strategies for Septoria of winter wheat.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010969
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An associative memory Hamiltonian model for DNA and nucleosomes.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011013
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Quantification of spatial and phenotypic heterogeneity in an agent-based model of tumour-macrophage interactions.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010994
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The effect of non-linear signal in classification problems using gene expression.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010984
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One model fits all: Combining inference and simulation of gene regulatory networks.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010962
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- Article
Docking cholesterol to integral membrane proteins with Rosetta.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010947
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Robust deep learning object recognition models rely on low frequency information in natural images.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010932
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A Bayesian approach to incorporate structural data into the mapping of genotype to antigenic phenotype of influenza A(H3N2) viruses.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010885
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- Article
The evolution of behavioral cues and signaling in displaced communication.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010487
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- Article
Global nonlinear approach for mapping parameters of neural mass models.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010985
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Topological descriptors of the parameter region of multistationarity: Deciding upon connectivity.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010970
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A real-time feedback system stabilises the regulation of worker reproduction under various colony sizes.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010840
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Modeling bee movement shows how a perceptual masking effect can influence flower discovery.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010558
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Atomistic simulation of protein evolution reveals sequence covariation and time-dependent fluctuations of site-specific substitution rates.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010262
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Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010966
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Ten simple rules for socially responsible science.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010954
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Mitochondrial network structure controls cell-to-cell mtDNA variability generated by cell divisions.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010953
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Theta-gamma phase amplitude coupling in a hippocampal CA1 microcircuit.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010942
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- Article
New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010903
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In vitro–in silico correlation of three-dimensional turbulent flows in an idealized mouth-throat model.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010537
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A systematic evaluation of deep learning methods for the prediction of drug synergy in cancer.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010200
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Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010999
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A real data-driven simulation strategy to select an imputation method for mixed-type trait data.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010154
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Large eddy simulation of droplet transport and deposition in the human respiratory tract to evaluate inhalation risk.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010972
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- Article
Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010946
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- Article
adaPop: Bayesian inference of dependent population dynamics in coalescent models.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010897
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Correction: Foraging as sampling without replacement: A Bayesian statistical model for estimating biases in target selection.
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- 2023
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- Correction Notice
ProInfer: An interpretable protein inference tool leveraging on biological networks.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010961
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PCB: A pseudotemporal causality-based Bayesian approach to identify EMT-associated regulatory relationships of AS events and RBPs during breast cancer progression.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010939
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Ten simple rules for designing and conducting undergraduate replication projects.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010957
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An implementation framework to improve the transparency and reproducibility of computational models of infectious diseases.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010856
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Inferring feature importance with uncertainties with application to large genotype data.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010963
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- Article
Predicting the causative pathogen among children with pneumonia using a causal Bayesian network.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010967
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- Article
First passage time analysis of spatial mutation patterns reveals sub-clonal evolutionary dynamics in colorectal cancer.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010952
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Hindcasts and forecasts of suicide mortality in US: A modeling study.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010945
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Towards self-describing and FAIR bulk formats for biomedical data.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010944
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G4mismatch: Deep neural networks to predict G-quadruplex propensity based on G4-seq data.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010948
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OSCAR: Optimal subset cardinality regression using the L0-pseudonorm with applications to prognostic modelling of prostate cancer.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010333
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- Article
Mechano-biological and bio-mechanical pathways in cutaneous wound healing.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010902
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- Article
Ten (not so) simple rules for clinical trial data-sharing.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010879
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- Article