Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 2

Results: 38

Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010922

By:

Trinity, Luke;
Wark, Ian;
Lansing, Lance;
Jabbari, Hosna;
Stege, Ulrike

Publication type:

Article

Interpreting T-cell search "strategies" in the light of evolution under constraints.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010918

By:

Wortel, Inge M. N.;
Textor, Johannes

Publication type:

Article

Impacts of observation frequency on proximity contact data and modeled transmission dynamics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010917

By:

Qian, Weicheng;
Stanley, Kevin Gordon;
Osgood, Nathaniel David

Publication type:

Article

Modeling the progression of Type 2 diabetes with underlying obesity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010914

By:

Yang, Boya;
Li, Jiaxu;
Haller, Michael J.;
Schatz, Desmond A.;
Rong, Libin

Publication type:

Article

Using real-time data to guide decision-making during an influenza pandemic: A modelling analysis.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010893

By:

Haw, David J.;
Biggerstaff, Matthew;
Prasad, Pragati;
Walker, Joseph;
Grenfell, Bryan;
Arinaminpathy, Nimalan

Publication type:

Article

A behavioral and modeling study of control algorithms underlying the translational optomotor response in larval zebrafish with implications for neural circuit function.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010924

By:

Holman, John G.;
Lai, Winnie W. K.;
Pichler, Paul;
Saska, Daniel;
Lagnado, Leon;
Buckley, Christopher L.

Publication type:

Article

Fusome topology and inheritance during insect gametogenesis.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010875

By:

Diegmiller, Rocky;
Imran Alsous, Jasmin;
Li, Duojia;
Yamashita, Yukiko M.;
Shvartsman, Stanislav Y.

Publication type:

Article

Evolutionary dynamics of hyperbolic language.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010872

By:

Krieger, Madison S.

Publication type:

Article

Contact networks have small metric backbones that maintain community structure and are primary transmission subgraphs.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010854

By:

Brattig Correia, Rion;
Barrat, Alain;
Rocha, Luis M.

Publication type:

Article

Infrastructure for bioinformatics applications in Tanzania: Lessons from the Sickle Cell Programme.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010848

By:

Mwita, Liberata A.;
Mawalla, William F.;
Mtiiye, Frank R.;
Kandonga, Daniel;
Kent, Jill;
Makani, Julie;
Sangeda, Raphael Z.

Publication type:

Article

Using pose estimation to identify regions and points on natural history specimens.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010933

By:

He, Yichen;
Cooney, Christopher R.;
Maddock, Steve;
Thomas, Gavin H.

Publication type:

Article

Hidden variable models reveal the effects of infection from changes in host survival.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010910

By:

Ferguson, Jake M.;
González-González, Andrea;
Kaiser, Johnathan A.;
Winzer, Sara M.;
Anast, Justin M.;
Ridenhour, Ben;
Miura, Tanya A.;
Parent, Christine E.

Publication type:

Article

A time-series analysis of blood-based biomarkers within a 25-year longitudinal dolphin cohort.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010890

By:

Rangan, Aaditya V.;
McGrouther, Caroline C.;
Bhadra, Nivedita;
Venn-Watson, Stephanie;
Jensen, Eric D.;
Schork, Nicholas J.

Publication type:

Article

Resonant learning in scale-free networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010894

By:

Goldman, Samuel;
Aldana, Maximino;
Cluzel, Philippe

Publication type:

Article

Phenotypic pliancy and the breakdown of epigenetic polycomb mechanisms.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010889

By:

Lambros, Maryl;
Sella, Yehonatan;
Bergman, Aviv

Publication type:

Article

Kinome inhibition states and multiomics data enable prediction of cell viability in diverse cancer types.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010888

By:

Berginski, Matthew E.;
Joisa, Chinmaya U.;
Golitz, Brian T.;
Gomez, Shawn M.

Publication type:

Article

Non-destructive classification of unlabeled cells: Combining an automated benchtop magnetic resonance scanner and artificial intelligence.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010842

By:

Fey, Philipp;
Weber, Daniel Ludwig;
Stebani, Jannik;
Mörchel, Philipp;
Jakob, Peter;
Hansmann, Jan;
Hiller, Karl-Heinz;
Haddad, Daniel

Publication type:

Article

Neural adaptation and fractional dynamics as a window to underlying neural excitability.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010527

By:

Lundstrom, Brian Nils;
Richner, Thomas J.

Publication type:

Article

Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010896

By:

Nielsen, Bjarke Frost;
Saad-Roy, Chadi M.;
Li, Yimei;
Sneppen, Kim;
Simonsen, Lone;
Viboud, Cécile;
Levin, Simon A.;
Grenfell, Bryan T.

Publication type:

Article

Nano-scale solution of the Poisson-Nernst-Planck (PNP) equations in a fraction of two neighboring cells reveals the magnitude of intercellular electrochemical waves.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010895

By:

Jæger, Karoline Horgmo;
Ivanovic, Ena;
Kucera, Jan P.;
Tveito, Aslak

Publication type:

Article

Functional duality in group criticality via ambiguous interactions.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010869

By:

Niizato, Takayuki;
Murakami, Hisashi;
Musha, Takuya

Publication type:

Article

New model of glucose-insulin regulation characterizes effects of physical activity and facilitates personalized treatment evaluation in children and adults with type 1 diabetes.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010289

By:

Deichmann, Julia;
Bachmann, Sara;
Burckhardt, Marie-Anne;
Pfister, Marc;
Szinnai, Gabor;
Kaltenbach, Hans-Michael

Publication type:

Article

Two stages of bandwidth scaling drives efficient neural coding of natural sounds.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010862

By:

He, Fengrong;
Stevenson, Ian H.;
Escabí, Monty A.

Publication type:

Article

Synaptic self-organization of spatio-temporal pattern selectivity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010876

By:

Dehghani-Habibabadi, Mohammad;
Pawelzik, Klaus

Publication type:

Article

An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010846

By:

Marangoni, Roberto;
Bevilacqua, Vitoantonio;
Cannataro, Mario;
Mele, Bruno Hay;
Mauri, Giancarlo;
Marabotti, Anna

Publication type:

Article

Modeling the three-dimensional connectivity of in vitro cortical ensembles coupled to Micro-Electrode Arrays.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010825

By:

Callegari, Francesca;
Brofiga, Martina;
Massobrio, Paolo

Publication type:

Article

AI reveals insights into link between CD33 and cognitive impairment in Alzheimer's Disease.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009894

By:

Raschka, Tamara;
Sood, Meemansa;
Schultz, Bruce;
Altay, Aybuge;
Ebeling, Christian;
Fröhlich, Holger

Publication type:

Article

An electrophysiological and kinematic model of Paramecium, the "swimming neuron".

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010899

By:

Elices, Irene;
Kulkarni, Anirudh;
Escoubet, Nicolas;
Pontani, Léa-Laetitia;
Prevost, Alexis Michel;
Brette, Romain

Publication type:

Article

Enhanced viral infectivity and reduced interferon production are associated with high pathogenicity for influenza viruses.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010886

By:

Li, Ke;
McCaw, James M.;
Cao, Pengxing

Publication type:

Article

iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010462

By:

Louwen, Joris J. R.;
Kautsar, Satria A.;
van der Burg, Sven;
Medema, Marnix H.;
van der Hooft, Justin J. J.

Publication type:

Article

Unsupervised learning reveals interpretable latent representations for translucency perception.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010878

By:

Liao, Chenxi;
Sawayama, Masataka;
Xiao, Bei

Publication type:

Article

A linear discriminant analysis model of imbalanced associative learning in the mushroom body compartment.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010864

By:

Lipshutz, David;
Kashalikar, Aneesh;
Farashahi, Shiva;
Chklovskii, Dmitri B.

Publication type:

Article

LSD-induced increase of Ising temperature and algorithmic complexity of brain dynamics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010811

By:

Ruffini, Giulio;
Damiani, Giada;
Lozano-Soldevilla, Diego;
Deco, Nikolas;
Rosas, Fernando E.;
Kiani, Narsis A.;
Ponce-Alvarez, Adrián;
Kringelbach, Morten L.;
Carhart-Harris, Robin;
Deco, Gustavo

Publication type:

Article

Model of neural induction in the ascidian embryo.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010335

By:

Bettoni, Rossana;
Hudson, Clare;
Williaume, Géraldine;
Sirour, Cathy;
Yasuo, Hitoyoshi;
de Buyl, Sophie;
Dupont, Geneviève

Publication type:

Article

Using 'sentinel' plants to improve early detection of invasive plant pathogens.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010884

By:

Lovell-Read, Francesca A.;
Parnell, Stephen;
Cunniffe, Nik J.;
Thompson, Robin N.

Publication type:

Article

Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010874

By:

Tubiana, Jérôme;
Adriana-Lifshits, Lucia;
Nissan, Michael;
Gabay, Matan;
Sher, Inbal;
Sova, Marina;
Wolfson, Haim J.;
Gal, Maayan

Publication type:

Article

Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010088

By:

Verdier, Hippolyte;
Laurent, François;
Cassé, Alhassan;
Vestergaard, Christian L.;
Specht, Christian G.;
Masson, Jean-Baptiste

Publication type:

Article

Decoupling of interacting neuronal populations by time-shifted stimulation through spike-timing-dependent plasticity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010853

By:

Madadi Asl, Mojtaba;
Valizadeh, Alireza;
Tass, Peter A.

Publication type:

Article