Works matching IS 1553734X AND DT 2022 AND VI 18 AND IP 9

Results: 91

Computational multiplex panel reduction to maximize information retention in breast cancer tissue microarrays.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010505

By:

Ternes, Luke;
Lin, Jia-Ren;
Chen, Yu-An;
Gray, Joe W.;
Chang, Young Hwan

Publication type:

Article

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010493

By:

Dimopoulos, Evangelos A.;
Carmagnini, Alberto;
Velsko, Irina M.;
Warinner, Christina;
Larson, Greger;
Frantz, Laurent A. F.;
Irving-Pease, Evan K.

Publication type:

Article

A hierarchical process model links behavioral aging and lifespan in C. elegans.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010415

By:

Oswal, Natasha;
Martin, Olivier M. F.;
Stroustrup, Sofia;
Bruckner, Monika Anna Matusiak;
Stroustrup, Nicholas

Publication type:

Article

Individualised computational modelling of immune mediated disease onset, flare and clearance in psoriasis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010267

By:

Shmarov, Fedor;
Smith, Graham R.;
Weatherhead, Sophie C.;
Reynolds, Nick J.;
Zuliani, Paolo

Publication type:

Article

Modeling enculturated bias in entrainment to rhythmic patterns.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010579

By:

Kaplan, Thomas;
Cannon, Jonathan;
Jamone, Lorenzo;
Pearce, Marcus

Publication type:

Article

Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010561

By:

Di Gioacchino, Andrea;
Procyk, Jonah;
Molari, Marco;
Schreck, John S.;
Zhou, Yu;
Liu, Yan;
Monasson, Rémi;
Cocco, Simona;
Šulc, Petr

Publication type:

Article

Estimation of the firing behaviour of a complete motoneuron pool by combining electromyography signal decomposition and realistic motoneuron modelling.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010556

By:

Caillet, Arnault H.;
Phillips, Andrew T. M.;
Farina, Dario;
Modenese, Luca

Publication type:

Article

A Deep Survival EWAS approach estimating risk profile based on pre-diagnostic DNA methylation: An application to breast cancer time to diagnosis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009959

By:

Massi, Michela Carlotta;
Dominoni, Lorenzo;
Ieva, Francesca;
Fiorito, Giovanni

Publication type:

Article

Interactions between attributions and beliefs at trial-by-trial level: Evidence from a novel computer game task.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009920

By:

Zamfir, Elena;
Dayan, Peter

Publication type:

Article

Ten simple rules for getting and giving credit for data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010476

By:

Wood-Charlson, Elisha M.;
Crockett, Zachary;
Erdmann, Chris;
Arkin, Adam P.;
Robinson, Carly B.

Publication type:

Article

Generalism drives abundance: A computational causal discovery approach.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010302

By:

Song, Chuliang;
Simmons, Benno I.;
Fortin, Marie-Josée;
Gonzalez, Andrew

Publication type:

Article

Optimizing laboratory-based surveillance networks for monitoring multi-genotype or multi-serotype infections.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010575

By:

Cheng, Qu;
Collender, Philip A.;
Heaney, Alexandra K.;
McLoughlin, Aidan;
Yang, Yang;
Zhang, Yuzi;
Head, Jennifer R.;
Dasan, Rohini;
Liang, Song;
Lv, Qiang;
Liu, Yaqiong;
Yang, Changhong;
Chang, Howard H.;
Waller, Lance A.;
Zelner, Jon;
Lewnard, Joseph A.;
Remais, Justin V.

Publication type:

Article

Towards reliable quantification of cell state velocities.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010031

By:

Marot-Lassauzaie, Valérie;
Bouman, Brigitte Joanne;
Donaghy, Fearghal Declan;
Demerdash, Yasmin;
Essers, Marieke Alida Gertruda;
Haghverdi, Laleh

Publication type:

Article

Interaction between games give rise to the evolution of moral norms of cooperation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010429

By:

Salahshour, Mohammad

Publication type:

Article

Pruning deep neural networks generates a sparse, bio-inspired nonlinear controller for insect flight.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010512

By:

Zahn, Olivia;
Bustamante Jr., Jorge;
Switzer, Callin;
Daniel, Thomas L.;
Kutz, J. Nathan

Publication type:

Article

Correcting motion induced fluorescence artifacts in two-channel neural imaging.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010421

By:

Creamer, Matthew S.;
Chen, Kevin S.;
Leifer, Andrew M.;
Pillow, Jonathan W.

Publication type:

Article

Using Fluorescence Recovery After Photobleaching data to uncover filament dynamics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010573

By:

Dallon, J. C.;
Leduc, Cécile;
Grant, Christopher P.;
Evans, Emily J.;
Etienne-Manneville, Sandrine;
Portet, Stéphanie

Publication type:

Article

Towards mouse genetic-specific RNA-sequencing read mapping.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010552

By:

Gobet, Nastassia;
Jan, Maxime;
Franken, Paul;
Xenarios, Ioannis

Publication type:

Article

Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010563

By:

Wang, Eric;
Chakraborty, Arup K.

Publication type:

Article

General object-based features account for letter perception.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010522

By:

Janini, Daniel;
Hamblin, Chris;
Deza, Arturo;
Konkle, Talia

Publication type:

Article

Cross-GWAS coherence test at the gene and pathway level.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010517

By:

Krefl, Daniel;
Bergmann, Sven

Publication type:

Article

Systems-level identification of key transcription factors in immune cell specification.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010116

By:

Liu, Cong;
Omilusik, Kyla;
Toma, Clara;
Kurd, Nadia S.;
Chang, John T.;
Goldrath, Ananda W.;
Wang, Wei

Publication type:

Article

Computational models reveal how chloride dynamics determine the optimal distribution of inhibitory synapses to minimise dendritic excitability.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010534

By:

Currin, Christopher Brian;
Raimondo, Joseph Valentino

Publication type:

Article

GenOtoScope: Towards automating ACMG classification of variants associated with congenital hearing loss.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009785

By:

Melidis, Damianos P.;
Landgraf, Christian;
Schmidt, Gunnar;
Schöner-Heinisch, Anja;
von Hardenberg, Sandra;
Lesinski-Schiedat, Anke;
Nejdl, Wolfgang;
Auber, Bernd

Publication type:

Article

An expert judgment model to predict early stages of the COVID-19 pandemic in the United States.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010485

By:

McAndrew, Thomas;
Reich, Nicholas G.

Publication type:

Article

Identification of key somatic oncogenic mutation based on a confounder-free causal inference model.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010529

By:

Liu, Yijun;
Sun, Ji;
Sun, Huiyan;
Chang, Yi

Publication type:

Article

Strange attractor of a narwhal (Monodon monoceros).

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010432

By:

Podolskiy, Evgeny A.;
Heide-Jørgensen, Mads Peter

Publication type:

Article

Comparing human and model-based forecasts of COVID-19 in Germany and Poland.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010405

By:

Bosse, Nikos I.;
Abbott, Sam;
Bracher, Johannes;
Hain, Habakuk;
Quilty, Billy J.;
Jit, Mark;
van Leeuwen, Edwin;
Cori, Anne;
Funk, Sebastian

Publication type:

Article

Is cell segregation like oil and water: Asymptotic versus transitory regime.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010460

By:

Franke, Florian;
Aland, Sebastian;
Böhme, Hans-Joachim;
Voss-Böhme, Anja;
Lange, Steffen

Publication type:

Article

MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010472

By:

Zhang, Lin;
Chen, Likai;
Yu, Xiaoqian;
Duvallet, Claire;
Isazadeh, Siavash;
Dai, Chengzhen;
Park, Shinkyu;
Frois-Moniz, Katya;
Duarte, Fabio;
Ratti, Carlo;
Alm, Eric J.;
Ling, Fangqiong

Publication type:

Article

Bayesian estimation of community size and overlap from random subsamples.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010451

By:

Johnson, Erik K.;
Larremore, Daniel B.

Publication type:

Article

Synaptic balancing: A biologically plausible local learning rule that provably increases neural network noise robustness without sacrificing task performance.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010418

By:

Stock, Christopher H.;
Harvey, Sarah E.;
Ocko, Samuel A.;
Ganguli, Surya

Publication type:

Article

On the incongruence of genotype-phenotype and fitness landscapes.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010524

By:

Srivastava, Malvika;
Payne, Joshua L.

Publication type:

Article

A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009788

By:

Geng, Yuncong;
Bohrer, Christopher Herrick;
Yehya, Nicolás;
Hendrix, Hunter;
Shachaf, Lior;
Liu, Jian;
Xiao, Jie;
Roberts, Elijah

Publication type:

Article

Omitting age-dependent mosquito mortality in malaria models underestimates the effectiveness of insecticide-treated nets.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009540

By:

Iacovidou, Melissa A.;
Barreaux, Priscille;
Spencer, Simon E. F.;
Thomas, Matthew B.;
Gorsich, Erin E.;
Rock, Kat S.

Publication type:

Article

Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010539

By:

Pearce, Robin;
Li, Yang;
Omenn, Gilbert S.;
Zhang, Yang

Publication type:

Article

Emergence of qualitative states in synthetic circuits driven by ultrasensitive growth feedback.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010518

By:

Melendez-Alvarez, Juan Ramon;
Tian, Xiao-Jun

Publication type:

Article

Robust inference of population size histories from genomic sequencing data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010419

By:

Upadhya, Gautam;
Steinrücken, Matthias

Publication type:

Article

Graph-based algorithms for Laplace transformed coalescence time distributions.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010532

By:

Bisschop, Gertjan

Publication type:

Article

Radical triads, not pairs, may explain effects of hypomagnetic fields on neurogenesis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010519

By:

Ramsay, Jess;
Kattnig, Daniel R.

Publication type:

Article

The osteogenetic activities of mesenchymal stem cells in response to Mg<sup>2+</sup> ions and inflammatory cytokines: A numerical approach using fuzzy logic controllers.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010482

By:

Nourisa, Jalil;
Zeller-Plumhoff, Berit;
Willumeit-Römer, Regine

Publication type:

Article

Optimal control methods for nonlinear parameter estimation in biophysical neuron models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010479

By:

Kadakia, Nirag

Publication type:

Article

Mathematical modeling to understand the role of bivalent thrombin-fibrin binding during polymerization.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010414

By:

Kelley, Michael A.;
Leiderman, Karin

Publication type:

Article

A simple kit to use computational notebooks for more openness, reproducibility, and productivity in research.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010356

By:

Figueiredo, Ludmilla;
Scherer, Cédric;
Cabral, Juliano Sarmento

Publication type:

Article

Extracting individual characteristics from population data reveals a negative social effect during honeybee defence.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010305

By:

Petrov, Tatjana;
Hajnal, Matej;
Klein, Julia;
Šafránek, David;
Nouvian, Morgane

Publication type:

Article

Demonstration of three-dimensional contact point determination and contour reconstruction during active whisking behavior of an awake rat.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007763

By:

Huet, Lucie A.;
Emnett, Hannah M.;
Hartmann, Mitra J. Z.

Publication type:

Article

Testing microbiome associations with survival times at both the community and individual taxon levels.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010509

By:

Hu, Yingtian;
Li, Yunxiao;
Satten, Glen A.;
Hu, Yi-Juan

Publication type:

Article

Distinguishing shadows from surface boundaries using local achromatic cues.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010473

By:

DiMattina, Christopher;
Burnham, Josiah J.;
Guner, Betul N.;
Yerxa, Haley B.

Publication type:

Article

A normative model of peripersonal space encoding as performing impact prediction.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010464

By:

Straka, Zdenek;
Noel, Jean-Paul;
Hoffmann, Matej

Publication type:

Article

Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010506

By:

Mäki-Marttunen, Tuomo;
Mäki-Marttunen, Verónica

Publication type:

Article