Works matching IS 1553734X AND DT 2022 AND VI 18 AND IP 6

Results: 104

Ig-VAE: Generative modeling of protein structure by direct 3D coordinate generation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010271

By:

Eguchi, Raphael R.;
Choe, Christian A.;
Huang, Po-Ssu

Publication type:

Article

Whole community invasions and the integration of novel ecosystems.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010151

By:

Campbell, Colin;
Russo, Laura;
Albert, Réka;
Buckling, Angus;
Shea, Katriona

Publication type:

Article

Ten simple rules for managing communications with a large number of coauthors.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010185

By:

Muscarella, Robert;
Poorter, Lourens

Publication type:

Article

Characterizing superspreading potential of infectious disease: Decomposition of individual transmissibility.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010281

By:

Zhao, Shi;
Chong, Marc K. C.;
Ryu, Sukhyun;
Guo, Zihao;
He, Mu;
Chen, Boqiang;
Musa, Salihu S.;
Wang, Jingxuan;
Wu, Yushan;
He, Daihai;
Wang, Maggie H.

Publication type:

Article

Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010238

By:

Lu, Alex X.;
Lu, Amy X.;
Pritišanac, Iva;
Zarin, Taraneh;
Forman-Kay, Julie D.;
Moses, Alan M.

Publication type:

Article

Data-based stochastic modeling reveals sources of activity bursts in single-cell TGF-β signaling.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010266

By:

Kolbe, Niklas;
Hexemer, Lorenz;
Bammert, Lukas-Malte;
Loewer, Alexander;
Lukáčová-Medvid'ová, Mária;
Legewie, Stefan

Publication type:

Article

Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010260

By:

Kalesinskas, Laurynas;
Gupta, Sanjana;
Khatri, Purvesh

Publication type:

Article

Computational analysis of memory consolidation following inhibitory avoidance (IA) training in adult and infant rats: Critical roles of CaMKIIα and MeCP2.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010239

By:

Zhang, Yili;
Smolen, Paul;
Alberini, Cristina M.;
Baxter, Douglas A.;
Byrne, John H.

Publication type:

Article

Mathematical modeling of the microtubule detyrosination/tyrosination cycle for cell-based drug screening design.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010236

By:

Grignard, Jeremy;
Lamamy, Véronique;
Vermersch, Eva;
Delagrange, Philippe;
Stephan, Jean-Philippe;
Dorval, Thierry;
Fages, François

Publication type:

Article

An ensemble forecast system for tracking dynamics of dengue outbreaks and its validation in China.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010218

By:

Chen, Yuliang;
Liu, Tao;
Yu, Xiaolin;
Zeng, Qinghui;
Cai, Zixi;
Wu, Haisheng;
Zhang, Qingying;
Xiao, Jianpeng;
Ma, Wenjun;
Pei, Sen;
Guo, Pi

Publication type:

Article

Inferring the effective reproductive number from deterministic and semi-deterministic compartmental models using incidence and mobility data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010206

By:

Andrade, Jair;
Duggan, Jim

Publication type:

Article

The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010203

By:

Martínez, Verónica S.;
Saa, Pedro A.;
Jooste, Jason;
Tiwari, Kanupriya;
Quek, Lake-Ee;
Nielsen, Lars K.

Publication type:

Article

Error-based or target-based? A unified framework for learning in recurrent spiking networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010221

By:

Capone, Cristiano;
Muratore, Paolo;
Paolucci, Pier Stanislao

Publication type:

Article

Covalent docking and molecular dynamics simulations reveal the specificity-shifting mutations Ala237Arg and Ala237Lys in TEM beta-lactamase.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009944

By:

Silva, Gabriel Monteiro da;
Yang, Jordan;
Leang, Bunlong;
Huang, Jessie;
Weinreich, Daniel M.;
Rubenstein, Brenda M.

Publication type:

Article

MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010241

By:

Alinejad-Rokny, Hamid;
Ghavami Modegh, Rassa;
Rabiee, Hamid R.;
Ramezani Sarbandi, Ehsan;
Rezaie, Narges;
Tam, Kin Tung;
Forrest, Alistair R. R.

Publication type:

Article

Evidence for influenza and RSV interaction from 10 years of enhanced surveillance in Nha Trang, Vietnam, a modelling study.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010234

By:

Waterlow, Naomi R.;
Toizumi, Michiko;
van Leeuwen, Edwin;
Thi Nguyen, Hien-Anh;
Myint-Yoshida, Lay;
Eggo, Rosalind M.;
Flasche, Stefan

Publication type:

Article

A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009294

By:

Vieira, Vítor;
Ferreira, Jorge;
Rocha, Miguel

Publication type:

Article

Identifying control ensembles for information processing within the cortico-basal ganglia-thalamic circuit.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010255

By:

Vich, Catalina;
Clapp, Matthew;
Rubin, Jonathan E.;
Verstynen, Timothy

Publication type:

Article

Correction: Stress generation, relaxation and size control in confined tumor growth.

Published in:

2022

By:

Yan, Huaming;
Ramirez-Guerrero, Daniel;
Lowengrub, John;
Wu, Min

Publication type:

Correction Notice

Interpretable pairwise distillations for generative protein sequence models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010219

By:

Feinauer, Christoph;
Meynard-Piganeau, Barthelemy;
Lucibello, Carlo

Publication type:

Article

Image-based parameter inference for epithelial mechanics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010209

By:

Ogita, Goshi;
Kondo, Takefumi;
Ikawa, Keisuke;
Uemura, Tadashi;
Ishihara, Shuji;
Sugimura, Kaoru

Publication type:

Article

Epidemic management and control through risk-dependent individual contact interventions.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010171

By:

Schneider, Tapio;
Dunbar, Oliver R. A.;
Wu, Jinlong;
Böttcher, Lucas;
Burov, Dmitry;
Garbuno-Inigo, Alfredo;
Wagner, Gregory L.;
Pei, Sen;
Daraio, Chiara;
Ferrari, Raffaele;
Shaman, Jeffrey

Publication type:

Article

LaDIVA: A neurocomputational model providing laryngeal motor control for speech acquisition and production.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010159

By:

Weerathunge, Hasini R.;
Alzamendi, Gabriel A.;
Cler, Gabriel J.;
Guenther, Frank H.;
Stepp, Cara E.;
Zañartu, Matías

Publication type:

Article

Ten simple rules for good research practice.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010139

By:

Schwab, Simon;
Janiaud, Perrine;
Dayan, Michael;
Amrhein, Valentin;
Panczak, Radoslaw;
Palagi, Patricia M.;
Hemkens, Lars G.;
Ramon, Meike;
Rothen, Nicolas;
Senn, Stephen;
Furrer, Eva;
Held, Leonhard

Publication type:

Article

Ten simple rules for improving communication among scientists.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010130

By:

Bautista, Carla;
Alfuraiji, Narjes;
Drangowska-Way, Anna;
Gangwani, Karishma;
de Flamingh, Alida;
Bourne, Philip E.

Publication type:

Article

Modeling cortical synaptic effects of anesthesia and their cholinergic reversal.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009743

By:

Eniwaye, Bolaji P.;
Booth, Victoria;
Hudetz, Anthony G.;
Zochowski, Michal

Publication type:

Article

Topological Sholl descriptors for neuronal clustering and classification.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010229

By:

Khalil, Reem;
Kallel, Sadok;
Farhat, Ahmad;
Dlotko, Pawel

Publication type:

Article

Quantifying biochemical reaction rates from static population variability within incompletely observed complex networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010183

By:

Wittenstein, Timon;
Leibovich, Nava;
Hilfinger, Andreas

Publication type:

Article

Tracking the contribution of inductive bias to individualised internal models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010182

By:

Török, Balázs;
Nagy, David G.;
Kiss, Mariann;
Janacsek, Karolina;
Németh, Dezső;
Orbán, Gergő

Publication type:

Article

A method for the inference of cytokine interaction networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010112

By:

Jansen, Joanneke E.;
Aschenbrenner, Dominik;
Uhlig, Holm H.;
Coles, Mark C.;
Gaffney, Eamonn A.

Publication type:

Article

Systematic inference of indirect transcriptional regulation by protein kinases and phosphatases.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009414

By:

Madsen, Christian Degnbol;
Hein, Jotun;
Workman, Christopher T.

Publication type:

Article

Sequence learning, prediction, and replay in networks of spiking neurons.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010233

By:

Bouhadjar, Younes;
Diesmann, Markus;
Wouters, Dirk J.;
Tetzlaff, Tom

Publication type:

Article

Towards a more general understanding of the algorithmic utility of recurrent connections.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010227

By:

Larsen, Brett W.;
Druckmann, Shaul

Publication type:

Article

Identification of upstream transcription factor binding sites in orthologous genes using mixed Student's t-test statistics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009773

By:

Huang, Tinghua;
Xiao, Hong;
Tian, Qi;
He, Zhen;
Yuan, Cheng;
Lin, Zezhao;
Gao, Xuejun;
Yao, Min

Publication type:

Article

Neural circuit mechanisms of hierarchical sequence learning tested on large-scale recording data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010214

By:

Asabuki, Toshitake;
Kokate, Prajakta;
Fukai, Tomoki

Publication type:

Article

Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010199

By:

Banwarth-Kuhn, Mikahl;
Rodriguez, Kevin;
Michael, Christian;
Ta, Calvin-Khang;
Plong, Alexander;
Bourgain-Chang, Eric;
Nematbakhsh, Ali;
Chen, Weitao;
Roy-Chowdhury, Amit;
Reddy, G. Venugopala;
Alber, Mark

Publication type:

Article

Efficient Bayesian inference for mechanistic modelling with high-throughput data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010191

By:

Martina Perez, Simon;
Sailem, Heba;
Baker, Ruth E.

Publication type:

Article

SCRaPL: A Bayesian hierarchical framework for detecting technical associates in single cell multiomics data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010163

By:

Maniatis, Christos;
Vallejos, Catalina A.;
Sanguinetti, Guido

Publication type:

Article

Size regulation of multiple organelles competing for a limiting subunit pool.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010253

By:

Banerjee, Deb Sankar;
Banerjee, Shiladitya

Publication type:

Article

Systematic perturbation of an artificial neural network: A step towards quantifying causal contributions in the brain.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010250

By:

Fakhar, Kayson;
Hilgetag, Claus C.

Publication type:

Article

Metastable spiking networks in the replica-mean-field limit.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010215

By:

Yu, Luyan;
Taillefumier, Thibaud O.

Publication type:

Article

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010174

By:

Wang, Shengbo;
García-Seisdedos, David;
Prakash, Ananth;
Kundu, Deepti Jaiswal;
Collins, Andrew;
George, Nancy;
Fexova, Silvie;
Moreno, Pablo;
Papatheodorou, Irene;
Jones, Andrew R.;
Vizcaíno, Juan Antonio

Publication type:

Article

Active inference unifies intentional and conflict-resolution imperatives of motor control.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010095

By:

Maselli, Antonella;
Lanillos, Pablo;
Pezzulo, Giovanni

Publication type:

Article

Orchestrated neuronal migration and cortical folding: A computational and experimental study.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010190

By:

Wang, Shuolun;
Saito, Kengo;
Kawasaki, Hiroshi;
Holland, Maria A.

Publication type:

Article

A weighted constraint satisfaction approach to human goal-directed decision making.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009553

By:

Li, Yuxuan;
McClelland, James L.

Publication type:

Article

Prediction and expression analysis of deleterious nonsynonymous SNPs of Arabidopsis ACD11 gene by combining computational algorithms and molecular docking approach.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009539

By:

Rifat, Mahmudul Hasan;
Ahmed, Jamil;
Ahmed, Milad;
Ahmed, Foeaz;
Gulshan, Airin;
Hasan, Mahmudul

Publication type:

Article

Explainable detection of adverse drug reaction with imbalanced data distribution.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010144

By:

Wang, Jin;
Yu, Liang-Chih;
Zhang, Xuejie

Publication type:

Article

SPF: A spatial and functional data analytic approach to cell imaging data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009486

By:

Vu, Thao;
Wrobel, Julia;
Bitler, Benjamin G.;
Schenk, Erin L.;
Jordan, Kimberly R.;
Ghosh, Debashis

Publication type:

Article

Direct reciprocity between individuals that use different strategy spaces.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010149

By:

Schmid, Laura;
Hilbe, Christian;
Chatterjee, Krishnendu;
Nowak, Martin A.

Publication type:

Article

Pre- and postsynaptically expressed spike-timing-dependent plasticity contribute differentially to neuronal learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009409

By:

Mizusaki, Beatriz Eymi Pimentel;
Li, Sally Si Ying;
Costa, Rui Ponte;
Sjöström, Per Jesper

Publication type:

Article