Works matching IS 1553734X AND DT 2022 AND VI 18 AND IP 5

Results: 63

Investigating the structural changes due to adenosine methylation of the Kaposi's sarcoma-associated herpes virus ORF50 transcript.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010150

By:

Röder, Konstantin;
Barker, Amy M.;
Whitehouse, Adrian;
Pasquali, Samuela

Publication type:

Article

Performance-gated deliberation: A context-adapted strategy in which urgency is opportunity cost.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010080

By:

Puelma Touzel, Maximilian;
Cisek, Paul;
Lajoie, Guillaume

Publication type:

Article

Negative feedback may suppress variation to improve collective foraging performance.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010090

By:

Reina, Andreagiovanni;
Marshall, James A. R.

Publication type:

Article

Anomalous diffusion and asymmetric tempering memory in neutrophil chemotaxis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010089

By:

Dieterich, Peter;
Lindemann, Otto;
Moskopp, Mats Leif;
Tauzin, Sebastien;
Huttenlocher, Anna;
Klages, Rainer;
Chechkin, Aleksei;
Schwab, Albrecht

Publication type:

Article

Networks of necessity: Simulating COVID-19 mitigation strategies for disabled people and their caregivers.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010042

By:

Valles, Thomas E.;
Shoenhard, Hannah;
Zinski, Joseph;
Trick, Sarah;
Porter, Mason A.;
Lindstrom, Michael R.

Publication type:

Article

Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010181

By:

Acar, Omer;
Zhang, She;
Bahar, Ivet;
Carvunis, Anne-Ruxandra

Publication type:

Article

BOSO: A novel feature selection algorithm for linear regression with high-dimensional data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010180

By:

Valcárcel, Luis V.;
San José-Enériz, Edurne;
Cendoya, Xabier;
Rubio, Ángel;
Agirre, Xabier;
Prósper, Felipe;
Planes, Francisco J.

Publication type:

Article

Mutational analysis of SARS-CoV-2 variants of concern reveals key tradeoffs between receptor affinity and antibody escape.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010160

By:

Makowski, Emily K.;
Schardt, John S.;
Smith, Matthew D.;
Tessier, Peter M.

Publication type:

Article

Genome-wide cross-cancer analysis illustrates the critical role of bimodal miRNA in patient survival and drug responses to PI3K inhibitors.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010109

By:

Moody, Laura;
Xu, Guanying Bianca;
Pan, Yuan-Xiang;
Chen, Hong

Publication type:

Article

A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009123

By:

Garrison, Erik;
Kronenberg, Zev N.;
Dawson, Eric T.;
Pedersen, Brent S.;
Prins, Pjotr

Publication type:

Article

Designing optimal allocations for cancer screening using queuing network models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010179

By:

Dean, Justin;
Goldberg, Evan;
Michor, Franziska

Publication type:

Article

Assessing the impact of lateral flow testing strategies on within-school SARS-CoV-2 transmission and absences: A modelling study.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010158

By:

Leng, Trystan;
Hill, Edward M.;
Thompson, Robin N.;
Tildesley, Michael J.;
Keeling, Matt J.;
Dyson, Louise

Publication type:

Article

A phenomenological computational model of the evoked action potential fitted to human cochlear implant responses.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010134

By:

Ramos-de-Miguel, Ángel;
Escobar, José M.;
Greiner, David;
Benítez, Domingo;
Rodríguez, Eduardo;
Oliver, Albert;
Hernández, Marcos;
Ramos-Macías, Ángel

Publication type:

Article

Discovering sparse control strategies in neural activity.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010072

By:

Lee, Edward D.;
Chen, Xiaowen;
Daniels, Bryan C.

Publication type:

Article

Uncertainty–guided learning with scaled prediction errors in the basal ganglia.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009816

By:

Moeller, Moritz;
Manohar, Sanjay;
Bogacz, Rafasl

Publication type:

Article

Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010138

By:

Montaño-Gutierrez, Luis Fernando;
Moreno, Nahuel Manzanaro;
Farquhar, Iseabail L.;
Huo, Yu;
Bandiera, Lucia;
Swain, Peter S.

Publication type:

Article

Sequence dependence of transient Hoogsteen base pairing in DNA.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010113

By:

Pérez de Alba Ortíz, Alberto;
Vreede, Jocelyne;
Ensing, Bernd

Publication type:

Article

Ten simple rules for navigating the reference letter seeking process.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010102

By:

Peña, Courtney;
Steele, Latishya J.;
Karhson, Debra S.;
Ned, Judith T.;
Botham, Crystal M.;
Stratton, Miranda B.

Publication type:

Article

Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries.

Published in:

2022

By:

Moore, Benjamin;
Carvajal-López, Patricia;
Abel Chauke, Paballo;
Cristancho, Marco;
Dominguez Del Angel, Victoria;
Fernandez-Valverde, Selene L.;
Ghouila, Amel;
Gopalasingam, Piraveen;
Guerfali, Fatma Zahra;
Matimba, Alice;
Morgan, Sarah L.;
Oliveira, Guilherme;
Ras, Verena;
Reyes, Alejandro;
De Las Rivas, Javier;
Mulder, Nicola

Publication type:

Correction Notice

Anatomy of the first six months of COVID-19 vaccination campaign in Italy.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010146

By:

Gozzi, Nicolò;
Chinazzi, Matteo;
Davis, Jessica T.;
Mu, Kunpeng;
Pastore y Piontti, Ana;
Ajelli, Marco;
Perra, Nicola;
Vespignani, Alessandro

Publication type:

Article

Correction: Linking statistical shape models and simulated function in the healthy adult human heart.

Published in:

2022

By:

Rodero, Cristobal;
Strocchi, Marina;
Marciniak, Maciej;
Longobardi, Stefano;
Whitaker, John;
O'Neill, Mark D.;
Gillette, Karli;
Augustin, Christoph;
Plank, Gernot;
Vigmond, Edward J.;
Lamata, Pablo;
Niederer, Steven A.

Publication type:

Correction Notice

The catalytic mechanism of the mitochondrial methylenetetrahydrofolate dehydrogenase/cyclohydrolase (MTHFD2).

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010140

By:

Zhao, Li Na;
Kaldis, Philipp

Publication type:

Article

Annotating functional effects of non-coding variants in neuropsychiatric cell types by deep transfer learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010011

By:

Lai, Boqiao;
Qian, Sheng;
Zhang, Hanwei;
Zhang, Siwei;
Kozlova, Alena;
Duan, Junbao;
Xu, Jinbo;
He, Xin

Publication type:

Article

Predicting knee adduction moment response to gait retraining with minimal clinical data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009500

By:

Rokhmanova, Nataliya;
Kuchenbecker, Katherine J.;
Shull, Peter B.;
Ferber, Reed;
Halilaj, Eni

Publication type:

Article

A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010106

By:

Pearcy, Nicole;
Garavaglia, Marco;
Millat, Thomas;
Gilbert, James P.;
Song, Yoseb;
Hartman, Hassan;
Woods, Craig;
Tomi-Andrino, Claudio;
Reddy Bommareddy, Rajesh;
Cho, Byung-Kwan;
Fell, David A.;
Poolman, Mark;
King, John R.;
Winzer, Klaus;
Twycross, Jamie;
Minton, Nigel P.

Publication type:

Article

Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008800

By:

Jarvis, Christopher I.;
Gimma, Amy;
Finger, Flavio;
Morris, Tim P.;
Thompson, Jennifer A.;
le Polain de Waroux, Olivier;
Edmunds, W. John;
Funk, Sebastian;
Jombart, Thibaut

Publication type:

Article

Linear viscoelastic properties of the vertex model for epithelial tissues.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010135

By:

Tong, Sijie;
Singh, Navreeta K.;
Sknepnek, Rastko;
Košmrlj, Andrej

Publication type:

Article

CystiHuman: A model of human neurocysticercosis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010118

By:

Bonnet, Gabrielle;
Pizzitutti, Francesco;
Gonzales-Gustavson, Eloy A.;
Gabriël, Sarah;
Pan, William K.;
Garcia, Hector H.;
Bustos, Javier A.;
Vilchez, Percy;
O'Neal, Seth E.

Publication type:

Article

Enhancing long-term forecasting: Learning from COVID-19 models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010100

By:

Rahmandad, Hazhir;
Xu, Ran;
Ghaffarzadegan, Navid

Publication type:

Article

Scalable and flexible inference framework for stochastic dynamic single-cell models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010082

By:

Persson, Sebastian;
Welkenhuysen, Niek;
Shashkova, Sviatlana;
Wiqvist, Samuel;
Reith, Patrick;
Schmidt, Gregor W.;
Picchini, Umberto;
Cvijovic, Marija

Publication type:

Article

LncRNAs of Saccharomyces cerevisiae bypass the cell cycle arrest imposed by ethanol stress.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010081

By:

Lázari, Lucas Cardoso;
Wolf, Ivan Rodrigo;
Schnepper, Amanda Piveta;
Valente, Guilherme Targino

Publication type:

Article

A computational model of stereoscopic prey capture in praying mantises.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009666

By:

O'Keeffe, James;
Yap, Sin Hui;
Llamas-Cornejo, Ichasus;
Nityananda, Vivek;
Read, Jenny C. A.

Publication type:

Article

Spatially resolved in silico modeling of NKG2D signaling kinetics suggests a key role of NKG2D and Vav1 Co-clustering in generating natural killer cell activation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010114

By:

Grewal, Rajdeep Kaur;
Das, Jayajit

Publication type:

Article

CBEA: Competitive balances for taxonomic enrichment analysis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010091

By:

Nguyen, Quang P.;
Hoen, Anne G.;
Frost, H. Robert

Publication type:

Article

Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010147

By:

Gerardos, Andonis;
Dietler, Nicola;
Bitbol, Anne-Florence

Publication type:

Article

Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010054

By:

Koslow, Wadim;
Kühn, Martin J.;
Binder, Sebastian;
Klitz, Margrit;
Abele, Daniel;
Basermann, Achim;
Meyer-Hermann, Michael

Publication type:

Article

Accurate, high-coverage assignment of in vivo protein kinases to phosphosites from in vitro phosphoproteomic specificity data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010110

By:

Invergo, Brandon M.

Publication type:

Article

Phase-locking patterns underlying effective communication in exact firing rate models of neural networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009342

By:

Reyner-Parra, David;
Huguet, Gemma

Publication type:

Article

Evolution of tunnels in α/β-hydrolase fold proteins—What can we learn from studying epoxide hydrolases?

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010119

By:

Bzówka, Maria;
Mitusińska, Karolina;
Raczyńska, Agata;
Skalski, Tomasz;
Samol, Aleksandra;
Bagrowska, Weronika;
Magdziarz, Tomasz;
Góra, Artur

Publication type:

Article

CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010075

By:

Reijnders, Maarten J. M. F.;
Waterhouse, Robert M.

Publication type:

Article

Characterization and clustering of kinase isoform expression in metastatic melanoma.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010065

By:

Holland, David O.;
Gotea, Valer;
Fedkenheuer, Kevin;
Jaiswal, Sushil K.;
Baugher, Catherine;
Tan, Hua;
Fedkenheuer, Michael;
Elnitski, Laura

Publication type:

Article

Integrated computational and in vivo models reveal Key Insights into macrophage behavior during bone healing.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009839

By:

Baratchart, Etienne;
Lo, Chen Hao;
Lynch, Conor C.;
Basanta, David

Publication type:

Article

Feature blindness: A challenge for understanding and modelling visual object recognition.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009572

By:

Malhotra, Gaurav;
Dujmović, Marin;
Bowers, Jeffrey S.

Publication type:

Article

Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010121

By:

Ribeiro-Filho, Helder Veras;
Jara, Gabriel Ernesto;
Batista, Fernanda Aparecida Heleno;
Schleder, Gabriel Ravanhani;
Costa Tonoli, Celisa Caldana;
Soprano, Adriana Santos;
Guimarães, Samuel Leite;
Borges, Antonio Carlos;
Cassago, Alexandre;
Bajgelman, Marcio Chaim;
Marques, Rafael Elias;
Trivella, Daniela Barretto Barbosa;
Franchini, Kleber Gomes;
Figueira, Ana Carolina Migliorini;
Benedetti, Celso Eduardo;
Lopes-de-Oliveira, Paulo Sergio

Publication type:

Article

Capturing the songs of mice with an improved detection and classification method for ultrasonic vocalizations (BootSnap).

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010049

By:

Abbasi, Reyhaneh;
Balazs, Peter;
Marconi, Maria Adelaide;
Nicolakis, Doris;
Zala, Sarah M.;
Penn, Dustin J.

Publication type:

Article

Ten simple rules for establishing a mentorship programme.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010015

By:

Treasure, Anne M.;
Hall, Siobhan Mackenzie;
Lesko, Igor;
Moore, Derek;
Sharan, Malvika;
van Zaanen, Menno;
Yehudi, Yo;
van der Walt, Anelda

Publication type:

Article

Superinfection exclusion: A viral strategy with short-term benefits and long-term drawbacks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010125

By:

Hunter, Michael;
Fusco, Diana

Publication type:

Article

A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010105

By:

Bueno, Carlos;
Liman, James;
Schafer, Nicholas P.;
Cheung, Margaret S.;
Wolynes, Peter G.

Publication type:

Article

Modelling the acclimation capacity of coral reefs to a warming ocean.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010099

By:

Raharinirina, Nomenjanahary Alexia;
Acevedo-Trejos, Esteban;
Merico, Agostino

Publication type:

Article

Influence of confinement on the spreading of bacterial populations.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010063

By:

Amchin, Daniel B.;
Ott, Jenna A.;
Bhattacharjee, Tapomoy;
Datta, Sujit S.

Publication type:

Article