Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 6

Results: 87

Modeling changes in probabilistic reinforcement learning during adolescence.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008524

By:

Xia, Liyu;
Master, Sarah L.;
Eckstein, Maria K.;
Baribault, Beth;
Dahl, Ronald E.;
Wilbrecht, Linda;
Collins, Anne Gabrielle Eva

Publication type:

Article

POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009148

By:

Castellano-Escuder, Pol;
González-Domínguez, Raúl;
Carmona-Pontaque, Francesc;
Andrés-Lacueva, Cristina;
Sánchez-Pla, Alex

Publication type:

Article

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009125

By:

Erdem, Cemal;
Lee, Adrian V.;
Taylor, D. Lansing;
Lezon, Timothy R.

Publication type:

Article

Mixture-of-Experts Variational Autoencoder for clustering and generating from similarity-based representations on single cell data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009086

By:

Kopf, Andreas;
Fortuin, Vincent;
Somnath, Vignesh Ram;
Claassen, Manfred

Publication type:

Article

A computational model of pig ventricular cardiomyocyte electrophysiology and calcium handling: Translation from pig to human electrophysiology.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009137

By:

Gaur, Namit;
Qi, Xiao-Yan;
Benoist, David;
Bernus, Olivier;
Coronel, Ruben;
Nattel, Stanley;
Vigmond, Edward J.

Publication type:

Article

Paradoxical phase response of gamma rhythms facilitates their entrainment in heterogeneous networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008575

By:

Xu, Xize;
Riecke, Hermann

Publication type:

Article

Molecular signatures of silencing suppression degeneracy from a complex RNA virus.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009166

By:

Ambrós, Silvia;
Gómez-Muñoz, Neus;
Giménez-Santamarina, Silvia;
Sánchez-Vicente, Javier;
Navarro-López, Josep;
Martínez, Fernando;
Daròs, José-Antonio;
Rodrigo, Guillermo

Publication type:

Article

Regulating synchronous oscillations of cerebellar granule cells by different types of inhibition.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009163

By:

Tang, Yuanhong;
An, Lingling;
Wang, Quan;
Liu, Jian K.

Publication type:

Article

Multidimensional analysis and detection of informative features in human brain white matter.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009136

By:

Richie-Halford, Adam;
Yeatman, Jason;
Simon, Noah;
Rokem, Ariel

Publication type:

Article

De novo mutational signature discovery in tumor genomes using SparseSignatures.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009119

By:

Lal, Avantika;
Liu, Keli;
Tibshirani, Robert;
Sidow, Arend;
Ramazzotti, Daniele

Publication type:

Article

Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009094

By:

Nardini, John T.;
Stolz, Bernadette J.;
Flores, Kevin B.;
Harrington, Heather A.;
Byrne, Helen M.

Publication type:

Article

Efficient encoding of spectrotemporal information for bat echolocation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009052

By:

Chitradurga Achutha, Adarsh;
Peremans, Herbert;
Firzlaff, Uwe;
Vanderelst, Dieter

Publication type:

Article

Thalamo-cortical spiking model of incremental learning combining perception, context and NREM-sleep.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009045

By:

Golosio, Bruno;
De Luca, Chiara;
Capone, Cristiano;
Pastorelli, Elena;
Stegel, Giovanni;
Tiddia, Gianmarco;
De Bonis, Giulia;
Paolucci, Pier Stanislao

Publication type:

Article

How public reaction to disease information across scales and the impacts of vector control methods influence disease prevalence and control efficacy.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008762

By:

Jiao, Jing;
Suarez, Gonzalo P.;
Fefferman, Nina H.

Publication type:

Article

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009056

By:

Dillon, Matthew R.;
Bolyen, Evan;
Adamov, Anja;
Belk, Aeriel;
Borsom, Emily;
Burcham, Zachary;
Debelius, Justine W.;
Deel, Heather;
Emmons, Alex;
Estaki, Mehrbod;
Herman, Chloe;
Keefe, Christopher R.;
Morton, Jamie T.;
Oliveira, Renato R. M.;
Sanchez, Andrew;
Simard, Anthony;
Vázquez-Baeza, Yoshiki;
Ziemski, Michal;
Miwa, Hazuki E.;
Kerere, Terry A.

Publication type:

Article

Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009143

By:

Yamagishi, Jumpei F.;
Saito, Nen;
Kaneko, Kunihiko

Publication type:

Article

Simulation of angiogenesis in three dimensions: Application to cerebral cortex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009164

By:

Alberding, Jonathan P.;
Secomb, Timothy W.

Publication type:

Article

Identifying the combinatorial control of signal-dependent transcription factors.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009095

By:

Wang, Ning;
Lefaudeux, Diane;
Mazumder, Anup;
Li, Jingyi Jessica;
Hoffmann, Alexander

Publication type:

Article

Analyzing cancer gene expression data through the lens of normal tissue-specificity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009085

By:

Frost, H. Robert

Publication type:

Article

PHENSIM: Phenotype Simulator.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009069

By:

Alaimo, Salvatore;
Rapicavoli, Rosaria Valentina;
Marceca, Gioacchino P.;
La Ferlita, Alessandro;
Serebrennikova, Oksana B.;
Tsichlis, Philip N.;
Mishra, Bud;
Pulvirenti, Alfredo;
Ferro, Alfredo

Publication type:

Article

A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009005

By:

O'Hare, Anthony;
Balaz, Daniel;
Wright, David M.;
McCormick, Carl;
McDowell, Stanley;
Trewby, Hannah;
Skuce, Robin A.;
Kao, Rowland R.

Publication type:

Article

Similar sensorimotor transformations control balance during standing and walking.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008369

By:

Afschrift, Maarten;
De Groote, Friedl;
Jonkers, Ilse

Publication type:

Article

A549 in-silico 1.0: A first computational model to simulate cell cycle dependent ion current modulation in the human lung adenocarcinoma.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009091

By:

Langthaler, Sonja;
Rienmüller, Theresa;
Scheruebel, Susanne;
Pelzmann, Brigitte;
Shrestha, Niroj;
Zorn-Pauly, Klaus;
Schreibmayer, Wolfgang;
Koff, Andrew;
Baumgartner, Christian

Publication type:

Article

Behavioral correlates of cortical semantic representations modeled by word vectors.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009138

By:

Nishida, Satoshi;
Blanc, Antione;
Maeda, Naoya;
Kado, Masataka;
Nishimoto, Shinji

Publication type:

Article

Ten simple rules for acing virtual interviews.

Published in:

2021

By:

Chan, Dalen;
Fitzsimmons, Christina M.;
Mandler, Mariana D.;
Batista, Pedro J.

Publication type:

Editorial

Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009121

By:

Cavallaro, Massimo;
Moiz, Haseeb;
Keeling, Matt J.;
McCarthy, Noel D.

Publication type:

Article

Multiple morphogens and rapid elongation promote segmental patterning during development.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009077

By:

Qiu, Yuchi;
Fung, Lianna;
Schilling, Thomas F.;
Nie, Qing

Publication type:

Article

pyTFM: A tool for traction force and monolayer stress microscopy.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008364

By:

Bauer, Andreas;
Prechová, Magdalena;
Fischer, Lena;
Thievessen, Ingo;
Gregor, Martin;
Fabry, Ben

Publication type:

Article

lra: A long read aligner for sequences and contigs.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009078

By:

Ren, Jingwen;
Chaisson, Mark J. P.

Publication type:

Article

Multiscale modeling of tumor growth and angiogenesis: Evaluation of tumor-targeted therapy.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009081

By:

Jafari Nivlouei, Sahar;
Soltani, M.;
Carvalho, João;
Travasso, Rui;
Salimpour, Mohammad Reza;
Shirani, Ebrahim

Publication type:

Article

Ion dynamics at the energy-deprived tripartite synapse.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009019

By:

Kalia, Manu;
Meijer, Hil G. E.;
van Gils, Stephan A.;
van Putten, Michel J. A. M.;
Rose, Christine R.

Publication type:

Article

Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007817

By:

Lloyd, Colton J.;
Monk, Jonathan;
Yang, Laurence;
Ebrahim, Ali;
Palsson, Bernhard O.

Publication type:

Article

High-affinity P2Y<sub>2</sub> and low-affinity P2X<sub>7</sub> receptor interaction modulates ATP-mediated calcium signaling in murine osteoblasts.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008872

By:

Mikolajewicz, Nicholas;
Smith, Delaney;
Komarova, Svetlana V.;
Khadra, Anmar

Publication type:

Article

Modeling the impact of single-cell stochasticity and size control on the population growth rate in asymmetrically dividing cells.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009080

By:

Barber, Felix;
Min, Jiseon;
Murray, Andrew W.;
Amir, Ariel

Publication type:

Article

A zero inflated log-normal model for inference of sparse microbial association networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009089

By:

Prost, Vincent;
Gazut, Stéphane;
Brüls, Thomas

Publication type:

Article

Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009072

By:

Byrne, Catherine M.;
Johnston, Christine;
Orem, Jackson;
Okuku, Fred;
Huang, Meei-Li;
Rahman, Habibur;
Wald, Anna;
Corey, Lawrence;
Schiffer, Joshua T.;
Casper, Corey;
Coombs, Daniel;
Gantt, Soren

Publication type:

Article

Bivalent chromatin as a therapeutic target in cancer: An in silico predictive approach for combining epigenetic drugs.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008408

By:

Alarcón, Tomás;
Sardanyés, Josep;
Guillamon, Antoni;
Menendez, Javier A.

Publication type:

Article

Reflecting on 20 years of breast cancer modeling in CISNET: Recommendations for future cancer systems modeling efforts.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009020

By:

Trentham-Dietz, Amy;
Alagoz, Oguzhan;
Chapman, Christina;
Huang, Xuelin;
Jayasekera, Jinani;
van Ravesteyn, Nicolien T.;
Lee, Sandra J.;
Schechter, Clyde B.;
Yeh, Jennifer M.;
Plevritis, Sylvia K.;
Mandelblatt, Jeanne S.

Publication type:

Article

Methodology for rigorous modeling of protein conformational changes by Rosetta using DEER Distance Restraints.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009107

By:

del Alamo, Diego;
Jagessar, Kevin L.;
Meiler, Jens;
Mchaourab, Hassane S.

Publication type:

Article

Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009108

By:

Esener, Necati;
Guerra, Alexandre Maciel;
Giebel, Katharina;
Lea, Daniel;
Green, Martin J.;
Bradley, Andrew J.;
Dottorini, Tania

Publication type:

Article

A computational grid-to-place-cell transformation model indicates a synaptic driver of place cell impairment in early-stage Alzheimer's Disease.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009115

By:

Ness, Natalie;
Schultz, Simon R.

Publication type:

Article

How does feedback from phage infections influence the evolution of phase variation in Campylobacter?

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009067

By:

Sandhu, Simran K.;
Bayliss, Christopher D.;
Morozov, Andrew Yu.

Publication type:

Article

Contact tracing efficiency, transmission heterogeneity, and accelerating COVID-19 epidemics.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009122

By:

Gardner, Billy J.;
Kilpatrick, A. Marm

Publication type:

Article

SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009118

By:

Qi, Jing;
Zhou, Yang;
Zhao, Zicen;
Jin, Shuilin

Publication type:

Article

Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009001

By:

Gonçalves, Bronner P.;
Procter, Simon R.;
Clifford, Sam;
Koukounari, Artemis;
Paul, Proma;
Lewin, Alexandra;
Jit, Mark;
Lawn, Joy

Publication type:

Article

Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008994

By:

Lu, Fred S.;
Nguyen, Andre T.;
Link, Nicholas B.;
Molina, Mathieu;
Davis, Jessica T.;
Chinazzi, Matteo;
Xiong, Xinyue;
Vespignani, Alessandro;
Lipsitch, Marc;
Santillana, Mauricio

Publication type:

Article

Iliski, a software for robust calculation of transfer functions.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008614

By:

Aydin, Ali-Kemal;
Haselden, William D.;
Dang, Julie;
Drew, Patrick J.;
Charpak, Serge;
Boido, Davide

Publication type:

Article

A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009058

By:

Hill, Edward M.;
Atkins, Benjamin D.;
Keeling, Matt J.;
Dyson, Louise;
Tildesley, Michael J.

Publication type:

Article

Three-dimensional topology optimization model to simulate the external shapes of bone.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009043

By:

Sakashita, Misaki;
Yamasaki, Shintaro;
Yaji, Kentaro;
Kawamoto, Atsushi;
Kondo, Shigeru

Publication type:

Article

Numerical evaluation reveals the effect of branching morphology on vessel transport properties during angiogenesis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008398

By:

Mirzapour-Shafiyi, Fatemeh;
Kametani, Yukinori;
Hikita, Takao;
Hasegawa, Yosuke;
Nakayama, Masanori

Publication type:

Article