Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 4

Results: 52

Efficient and robust coding in heterogeneous recurrent networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008673

By:

Zeldenrust, Fleur;
Gutkin, Boris;
Denéve, Sophie

Publication type:

Article

Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008067

By:

Meerstein-Kessel, Lisette;
Venhuizen, Jeron;
Garza, Daniel;
Proellochs, Nicholas I.;
Vos, Emma J.;
Obiero, Joshua M.;
Felgner, Philip L.;
Sauerwein, Robert W.;
Peters, Marynthe;
Yang, Annie S. P.;
Huynen, Martijn A.

Publication type:

Article

Interactions between all pairs of neighboring trees in 16 forests worldwide reveal details of unique ecological processes in each forest, and provide windows into their evolutionary histories.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008853

By:

Wills, Christopher;
Wang, Bin;
Fang, Shuai;
Wang, Yunquan;
Jin, Yi;
Lutz, James;
Thompson, Jill;
Harms, Kyle E.;
Pulla, Sandeep;
Pasion, Bonifacio;
Germain, Sara;
Liu, Heming;
Smokey, Joseph;
Su, Sheng-Hsin;
Butt, Nathalie;
Chu, Chengjin;
Chuyong, George;
Chang-Yang, Chia-Hao;
Dattaraja, H. S.;
Davies, Stuart

Publication type:

Article

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008914

By:

Hebert, Laetitia;
Ahamed, Tosif;
Costa, Antonio C.;
O'Shaughnessy, Liam;
Stephens, Greg J.

Publication type:

Article

Detecting adherence to the recommended childhood vaccination schedule from user-generated content in a US parenting forum.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008919

By:

Betti, Lorenzo;
De Francisci Morales, Gianmarco;
Gauvin, Laetitia;
Kalimeri, Kyriaki;
Mejova, Yelena;
Paolotti, Daniela;
Starnini, Michele

Publication type:

Article

Efficient population coding depends on stimulus convergence and source of noise.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008897

By:

Röth, Kai;
Shao, Shuai;
Gjorgjieva, Julijana

Publication type:

Article

Effect of synchronization of firings of different motor unit types on the force variability in a model of the rat medial gastrocnemius muscle.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008282

By:

Raikova, Rositsa;
Krasteva, Vessela;
Krutki, Piotr;
Drzymała-Celichowska, Hanna;
Kryściak, Katarzyna;
Celichowski, Jan

Publication type:

Article

Dynamic decorrelation as a unifying principle for explaining a broad range of brightness phenomena.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007907

By:

Lerer, Alejandro;
Supèr, Hans;
Keil, Matthias S.

Publication type:

Article

Two-dimensional video-based analysis of human gait using pose estimation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008935

By:

Stenum, Jan;
Rossi, Cristina;
Roemmich, Ryan T.

Publication type:

Article

Unraveling the mechanisms of surround suppression in early visual processing.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008916

By:

Li, Yao;
Young, Lai-Sang

Publication type:

Article

Correction: An antigenic diversification threshold for falciparum malaria transmission at high endemicity.

Published in:: 2021
Publication type:: Correction Notice

Vessel network extraction and analysis of mouse pulmonary vasculature via X-ray micro-computed tomographic imaging.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008930

By:

Chadwick, Eric A.;
Suzuki, Takaya;
George, Michael G.;
Romero, David A.;
Amon, Cristina;
Waddell, Thomas K.;
Karoubi, Golnaz;
Bazylak, Aimy

Publication type:

Article

Systematic comparison and prediction of the effects of missense mutations on protein-DNA and protein-RNA interactions.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008951

By:

Jiang, Yao;
Liu, Hui-Fang;
Liu, Rong

Publication type:

Article

The landscape of metabolic pathway dependencies in cancer cell lines.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008942

By:

Joly, James H.;
Chew, Brandon T. L.;
Graham, Nicholas A.

Publication type:

Article

Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008798

By:

Bassot, Claudio;
Elofsson, Arne

Publication type:

Article

Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008926

By:

Shah, Rohan N.;
Ruthenburg, Alexander J.

Publication type:

Article

Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008856

By:

Deneu, Benjamin;
Servajean, Maximilien;
Bonnet, Pierre;
Botella, Christophe;
Munoz, François;
Joly, Alexis

Publication type:

Article

Hierarchical motor adaptations negotiate failures during force field learning.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008481

By:

Ikegami, Tsuyoshi;
Ganesh, Gowrishankar;
Gibo, Tricia L.;
Yoshioka, Toshinori;
Osu, Rieko;
Kawato, Mitsuo

Publication type:

Article

Estimating Transfer Entropy in Continuous Time Between Neural Spike Trains or Other Event-Based Data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008054

By:

Shorten, David P.;
Spinney, Richard E.;
Lizier, Joseph T.

Publication type:

Article

The metastable brain associated with autistic-like traits of typically developing individuals.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008929

By:

Sase, Takumi;
Kitajo, Keiichi

Publication type:

Article

MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008887

By:

Baranski, Alex;
Milo, Idan;
Greenbaum, Shirley;
Oliveria, John-Paul;
Mrdjen, Dunja;
Angelo, Michael;
Keren, Leeat

Publication type:

Article

Transmission delays and frequency detuning can regulate information flow between brain regions.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008129

By:

Pariz, Aref;
Fischer, Ingo;
Valizadeh, Alireza;
Mirasso, Claudio

Publication type:

Article

Genome-wide analysis of lncRNA stability in human.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008918

By:

Shi, Kaiwen;
Liu, Tao;
Fu, Hanjiang;
Li, Wuju;
Zheng, Xiaofei

Publication type:

Article

Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParBS partition complex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008869

By:

Walter, Jean-Charles;
Lepage, Thibaut;
Dorignac, Jérôme;
Geniet, Frédéric;
Parmeggiani, Andrea;
Palmeri, John;
Bouet, Jean-Yves;
Junier, Ivan

Publication type:

Article

A new model for simultaneous dimensionality reduction and time-varying functional connectivity estimation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008580

By:

Vidaurre, Diego

Publication type:

Article

Linking statistical shape models and simulated function in the healthy adult human heart.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008851

By:

Rodero, Cristobal;
Strocchi, Marina;
Marciniak, Maciej;
Longobardi, Stefano;
Whitaker, John;
O'Neill, Mark D.;
Gillette, Karli;
Augustin, Christoph;
Plank, Gernot;
Vigmond, Edward J.;
Lamata, Pablo;
Niederer, Steven A.

Publication type:

Article

Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008909

By:

Menichelli, Christophe;
Guitard, Vincent;
Martins, Rafael M.;
Lèbre, Sophie;
Lopez-Rubio, Jose-Juan;
Lecellier, Charles-Henri;
Bréhélin, Laurent

Publication type:

Article

Accurate cancer phenotype prediction with AKLIMATE, a stacked kernel learner integrating multimodal genomic data and pathway knowledge.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008878

By:

Uzunangelov, Vladislav;
Wong, Christopher K.;
Stuart, Joshua M.

Publication type:

Article

VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008806

By:

Cai, Changjia;
Friedrich, Johannes;
Singh, Amrita;
Eybposh, M. Hossein;
Pnevmatikakis, Eftychios A.;
Podgorski, Kaspar;
Giovannucci, Andrea

Publication type:

Article

Differential contributions of synaptic and intrinsic inhibitory currents to speech segmentation via flexible phase-locking in neural oscillators.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008783

By:

Pittman-Polletta, Benjamin R.;
Wang, Yangyang;
Stanley, David A.;
Schroeder, Charles E.;
Whittington, Miles A.;
Kopell, Nancy J.

Publication type:

Article

Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008826

By:

Lange, Steffen;
Friedrich, Benjamin M.

Publication type:

Article

Mistakes can stabilise the dynamics of rock-paper-scissors games.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008523

By:

Kleshnina, Maria;
Streipert, Sabrina S.;
Filar, Jerzy A.;
Chatterjee, Krishnendu

Publication type:

Article

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008891

By:

Österberg, Linnea;
Domenzain, Iván;
Münch, Julia;
Nielsen, Jens;
Hohmann, Stefan;
Cvijovic, Marija

Publication type:

Article

Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008860

By:

Nanda, Piyush;
Ghosh, Amit

Publication type:

Article

Inhibitory neurons exhibit high controlling ability in the cortical microconnectome.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008846

By:

Kajiwara, Motoki;
Nomura, Ritsuki;
Goetze, Felix;
Kawabata, Masanori;
Isomura, Yoshikazu;
Akutsu, Tatsuya;
Shimono, Masanori

Publication type:

Article

Behavioral discrimination and time-series phenotyping of birdsong performance.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008820

By:

Paul, Avishek;
McLendon, Helen;
Rally, Veronica;
Sakata, Jon T.;
Woolley, Sarah C.

Publication type:

Article

Correction: Contrasting mechanisms for hidden hearing loss: Synaptopathy vs myelin defects.

Published in:

2021

By:

Budak, Maral;
Grosh, Karl;
Sasmal, Aritra;
Corfas, Gabriel;
Zochowski, Michal;
Booth, Victoria

Publication type:

Correction Notice

Avoiding the bullies: The resilience of cooperation among unequals.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008847

By:

Foley, Michael;
Smead, Rory;
Forber, Patrick;
Riedl, Christoph

Publication type:

Article

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008329

By:

Mironov, Aleksei;
Denisov, Stepan;
Gress, Alexander;
Kalinina, Olga V.;
Pervouchine, Dmitri D.

Publication type:

Article

Computation of the electroencephalogram (EEG) from network models of point neurons.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008893

By:

Martínez-Cañada, Pablo;
Ness, Torbjørn V.;
Einevoll, Gaute T.;
Fellin, Tommaso;
Panzeri, Stefano

Publication type:

Article

Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008890

By:

Velásquez-Zapata, Valeria;
Elmore, J. Mitch;
Banerjee, Sagnik;
Dorman, Karin S.;
Wise, Roger P.

Publication type:

Article

Building blocks and blueprints for bacterial autolysins.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008889

By:

Mitchell, Spencer;
Verma, Deeptak;
Griswold, Karl E.;
Bailey-Kellogg, Chris

Publication type:

Article

Individual differences in the perception of probability.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008871

By:

Khaw, Mel W.;
Stevens, Luminita;
Woodford, Michael

Publication type:

Article

ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008792

By:

Liang, Lifan;
Zhu, Kunju;
Tao, Junyan;
Lu, Songjian

Publication type:

Article

Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008218

By:

Li, Zhuliu;
Song, Tianci;
Yong, Jeongsik;
Kuang, Rui

Publication type:

Article

Correction: Ten simple rules to colorize biological data visualization.

Published in:

2021

By:

Hattab, Georges;
Rhyne, Theresa-Marie;
Heider, Dominik

Publication type:

Correction Notice

Machine learning-based investigation of the cancer protein secretory pathway.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008898

By:

Saghaleyni, Rasool;
Sheikh Muhammad, Azam;
Bangalore, Pramod;
Nielsen, Jens;
Robinson, Jonathan L.

Publication type:

Article

Temporal dynamics of a CSF1R signaling gene regulatory network involved in epilepsy.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008854

By:

Gérard, Claude;
De Mot, Laurane;
Cordi, Sabine;
van Eyll, Jonathan;
Lemaigre, Frédéric P.

Publication type:

Article

Computational modelling of muscle fibre operating ranges in the hindlimb of a small ground bird (Eudromia elegans), with implications for modelling locomotion in extinct species.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008843

By:

Bishop, Peter J.;
Michel, Krijn B.;
Falisse, Antoine;
Cuff, Andrew R.;
Allen, Vivian R.;
De Groote, Friedl;
Hutchinson, John R.

Publication type:

Article

Using Hawkes Processes to model imported and local malaria cases in near-elimination settings.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008830

By:

Unwin, H. Juliette T.;
Routledge, Isobel;
Flaxman, Seth;
Rizoiu, Marian-Andrei;
Lai, Shengjie;
Cohen, Justin;
Weiss, Daniel J.;
Mishra, Swapnil;
Bhatt, Samir

Publication type:

Article