Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 3

Results: 105

Correction: Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits.

Published in:: 2021
Publication type:: Correction Notice

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008852

By:

Erdős, Balázs;
van Sloun, Bart;
Adriaens, Michiel E.;
O'Donovan, Shauna D.;
Langin, Dominique;
Astrup, Arne;
Blaak, Ellen E.;
Arts, Ilja C. W.;
van Riel, Natal A. W.

Publication type:

Article

CODON—Software to manual curation of prokaryotic genomes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008797

By:

Merlin, Bruno;
Castro Alves, Jorianne Thyeska;
de Sá, Pablo Henrique Caracciolo Gomes;
de Oliveira, Mônica Silva;
Dias, Larissa Maranhão;
da Silva Moia, Gislenne;
Cardoso dos Santos, Victória;
Veras, Adonney Allan de Oliveira

Publication type:

Article

Modeling the circadian regulation of the immune system: Sexually dimorphic effects of shift work.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008514

By:

Abo, Stéphanie M. C.;
Layton, Anita T.

Publication type:

Article

Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008880

By:

Marcon, Yannick;
Bishop, Tom;
Avraam, Demetris;
Escriba-Montagut, Xavier;
Ryser-Welch, Patricia;
Wheater, Stuart;
Burton, Paul;
González, Juan R.

Publication type:

Article

Apoptosis mapping in space and timee of 3D tumor ecosystems reveals transmissibility of cytotoxic cancer death.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008870

By:

Veith, Irina;
Mencattini, Arianna;
Picant, Valentin;
Serra, Marco;
Leclerc, Marine;
Comes, Maria Colomba;
Mami-Chouaib, Fathia;
Camonis, Jacques;
Descroix, Stéphanie;
Shirvani, Hamasseh;
Mechta-Grigoriou, Fatima;
Zalcman, Gérard;
Parrini, Maria Carla;
Martinelli, Eugenio

Publication type:

Article

PDKit: A data science toolkit for the digital assessment of Parkinson's Disease.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008833

By:

Stamate, Cosmin;
Saez Pons, Joan;
Weston, David;
Roussos, George

Publication type:

Article

Estimating incidence of infection from diverse data sources: Zika virus in Puerto Rico, 2016.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008812

By:

Quandelacy, Talia M.;
Healy, Jessica M.;
Greening, Bradford;
Rodriguez, Dania M.;
Chung, Koo-Whang;
Kuehnert, Matthew J.;
Biggerstaff, Brad J.;
Dirlikov, Emilio;
Mier-y-Teran-Romero, Luis;
Sharp, Tyler M.;
Waterman, Stephen;
Johansson, Michael A.

Publication type:

Article

Viscoelastic properties of wheat gluten in a molecular dynamics study.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008840

By:

Mioduszewski, Łukasz;
Cieplak, Marek

Publication type:

Article

Rational inattention and tonic dopamine.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008659

By:

Mikhael, John G.;
Lai, Lucy;
Gershman, Samuel J.

Publication type:

Article

Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008819

By:

Climente-González, Héctor;
Lonjou, Christine;
Lesueur, Fabienne;
Stoppa-Lyonnet, Dominique;
Andrieu, Nadine;
Azencott, Chloé-Agathe

Publication type:

Article

Collaborating with our community to increase code sharing.

Published in:

2021

By:

Cadwallader, Lauren;
Papin, Jason A.;
Mac Gabhann, Feilim;
Kirk, Rebecca

Publication type:

Editorial

On realized serial and generation intervals given control measures: The COVID-19 pandemic case.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008892

By:

Torneri, Andrea;
Libin, Peter;
Scalia Tomba, Gianpaolo;
Faes, Christel;
Wood, James G.;
Hens, Niel

Publication type:

Article

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008864

By:

Ripoll, Daniel R.;
Chaudhury, Sidhartha;
Wallqvist, Anders

Publication type:

Article

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008857

By:

Espinoza, Josh L.;
Dupont, Chris L.;
O'Rourke, Aubrie;
Beyhan, Sinem;
Morales, Pavel;
Spoering, Amy;
Meyer, Kirsten J.;
Chan, Agnes P.;
Choi, Yongwook;
Nierman, William C.;
Lewis, Kim;
Nelson, Karen E.

Publication type:

Article

How does Sec63 affect the conformation of Sec61 in yeast?

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008855

By:

Bhadra, Pratiti;
Yadhanapudi, Lalitha;
Römisch, Karin;
Helms, Volkhard

Publication type:

Article

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008837

By:

Watson, Gregory L.;
Xiong, Di;
Zhang, Lu;
Zoller, Joseph A.;
Shamshoian, John;
Sundin, Phillip;
Bufford, Teresa;
Rimoin, Anne W.;
Suchard, Marc A.;
Ramirez, Christina M.

Publication type:

Article

Tuned inhibition in perceptual decision-making circuits can explain seemingly suboptimal confidence behavior.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008779

By:

Maniscalco, Brian;
Odegaard, Brian;
Grimaldi, Piercesare;
Cho, Seong Hah;
Basso, Michele A.;
Lau, Hakwan;
Peters, Megan A. K.

Publication type:

Article

Vocalization with semi-occluded airways is favorable for optimizing sound production.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008744

By:

Titze, Ingo R.;
Palaparthi, Anil;
Cox, Karin;
Stark, Amanda;
Maxfield, Lynn;
Manternach, Brian

Publication type:

Article

Graph of graphs analysis for multiplexed data with application to imaging mass cytometry.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008741

By:

Lin, Ya-Wei Eileen;
Shnitzer, Tal;
Talmon, Ronen;
Villarroel-Espindola, Franz;
Desai, Shruti;
Schalper, Kurt;
Kluger, Yuval

Publication type:

Article

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008690

By:

Wooten, David J.;
Zañudo, Jorge Gómez Tejeda;
Murrugarra, David;
Perry, Austin M.;
Dongari-Bagtzoglou, Anna;
Laubenbacher, Reinhard;
Nobile, Clarissa J.;
Albert, Réka

Publication type:

Article

Perturbations both trigger and delay seizures due to generic properties of slow-fast relaxation oscillators.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008521

By:

Pérez-Cervera, Alberto;
Hlinka, Jaroslav

Publication type:

Article

A prediction tool for plaque progression based on patient-specific multi-physical modeling.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008344

By:

Pan, Jichao;
Cai, Yan;
Wang, Liang;
Maehara, Akiko;
Mintz, Gary S.;
Tang, Dalin;
Li, Zhiyong

Publication type:

Article

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008865

By:

Li, Yang;
Zhang, Chengxin;
Bell, Eric W.;
Zheng, Wei;
Zhou, Xiaogen;
Yu, Dong-Jun;
Zhang, Yang

Publication type:

Article

Fixation patterns in simple choice reflect optimal information sampling.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008863

By:

Callaway, Frederick;
Rangel, Antonio;
Griffiths, Thomas L.

Publication type:

Article

Full-length ribosome density prediction by a multi-input and multi-output model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008842

By:

Tian, Tingzhong;
Li, Shuya;
Lang, Peng;
Zhao, Dan;
Zeng, Jianyang

Publication type:

Article

Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008841

By:

Pavlova, Yekaterina S.;
Paez-Espino, David;
Morozov, Andrew Yu.;
Belalov, Ilya S.

Publication type:

Article

Learning compositional sequences with multiple time scales through a hierarchical network of spiking neurons.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008866

By:

Maes, Amadeus;
Barahona, Mauricio;
Clopath, Claudia

Publication type:

Article

Novel anti-malarial drug strategies to prevent artemisinin partner drug resistance: A model-based analysis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008850

By:

Kunkel, Amber;
White, Michael;
Piola, Patrice

Publication type:

Article

Analysis of spiking synchrony in visual cortex reveals distinct types of top-down modulation signals for spatial and object-based attention.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008829

By:

Wagatsuma, Nobuhiko;
Hu, Brian;
von der Heydt, Rüdiger;
Niebur, Ernst

Publication type:

Article

Predicting recognition between T cell receptors and epitopes with TCRGP.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008814

By:

Jokinen, Emmi;
Huuhtanen, Jani;
Mustjoki, Satu;
Heinonen, Markus;
Lähdesmäki, Harri

Publication type:

Article

Parameters and determinants of responses to selection in antibody libraries.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008751

By:

Schulz, Steven;
Boyer, Sébastien;
Smerlak, Matteo;
Cocco, Simona;
Monasson, Rémi;
Nizak, Clément;
Rivoire, Olivier

Publication type:

Article

Reconstructing feedback representations in the ventral visual pathway with a generative adversarial autoencoder.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008775

By:

Al-Tahan, Haider;
Mohsenzadeh, Yalda

Publication type:

Article

Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008815

By:

Richmond, Phillip Andrew;
Kaye, Alice Mary;
Kounkou, Godfrain Jacques;
Av-Shalom, Tamar Vered;
Wasserman, Wyeth W.

Publication type:

Article

An elasticity-curvature illusion decouples cutaneous and proprioceptive cues in active exploration of soft objects.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008848

By:

Xu, Chang;
Wang, Yuxiang;
Gerling, Gregory J.

Publication type:

Article

The biophysical basis underlying the maintenance of early phase long-term potentiation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008813

By:

Becker, Moritz F. P.;
Tetzlaff, Christian

Publication type:

Article

Discovery of novel dual adenosine A<sub>1</sub>/A<sub>2A</sub> receptor antagonists using deep learning, pharmacophore modeling and molecular docking.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008821

By:

Wang, Mukuo;
Hou, Shujing;
Wei, Yu;
Li, Dongmei;
Lin, Jianping

Publication type:

Article

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008197

By:

Durairaj, Janani;
Melillo, Elena;
Bouwmeester, Harro J.;
Beekwilder, Jules;
de Ridder, Dick;
van Dijk, Aalt D. J.

Publication type:

Article

Predicting microbial growth dynamics in response to nutrient availability.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008817

By:

Nev, Olga A.;
Lindsay, Richard J.;
Jepson, Alys;
Butt, Lisa;
Beardmore, Robert E.;
Gudelj, Ivana

Publication type:

Article

Physiologically based pharmacokinetic/pharmacodynamic model for the prediction of morphine brain disposition and analgesia in adults and children.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008786

By:

Verscheijden, Laurens F. M.;
Litjens, Carlijn H. C.;
Koenderink, Jan B.;
Mathijssen, Ron H. J.;
Verbeek, Marcel M.;
de Wildt, Saskia N.;
Russel, Frans G. M.

Publication type:

Article

Mechanical coupling in the nitrogenase complex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008719

By:

Huang, Qi;
Tokmina-Lukaszewska, Monika;
Johnson, Lewis E.;
Kallas, Hayden;
Ginovska, Bojana;
Peters, John W.;
Seefeldt, Lance C.;
Bothner, Brian;
Raugei, Simone

Publication type:

Article

COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008769

By:

He, Song;
Song, Xinyu;
Yang, Xiaoxi;
Yu, Jijun;
Wen, Yuqi;
Wu, Lianlian;
Yan, Bowei;
Feng, Jiannan;
Bo, Xiaochen

Publication type:

Article

Principles for data analysis workflows.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008770

By:

Stoudt, Sara;
Vásquez, Váleri N.;
Martinez, Ciera C.

Publication type:

Article

Optimal timing of one-shot interventions for epidemic control.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008763

By:

Di Lauro, Francesco;
Kiss, István Z.;
Miller, Joel C.

Publication type:

Article

A unified framework for inferring the multi-scale organization of chromatin domains from Hi-C.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008834

By:

Bak, Ji Hyun;
Kim, Min Hyeok;
Liu, Lei;
Hyeon, Changbong

Publication type:

Article

Ten simple rules for hitting a home run with your elevator pitch.

Published in:

2021

By:

Morgan, Whitney Rachel;
Wright, Erik Scott

Publication type:

Editorial

Application of a bioinformatics training delivery method for reaching dispersed and distant trainees.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008715

By:

Hall, Christina R.;
Griffin, Philippa C.;
Lonie, Andrew J.;
Christiansen, Jeffrey H.

Publication type:

Article

Connectivity, reproduction number, and mobility interact to determine communities' epidemiological superspreader potential in a metapopulation network.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008674

By:

Lieberthal, Brandon;
Gardner, Allison M.

Publication type:

Article

Repulsive expansion dynamics in colony growth and gene expression.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008168

By:

Cao, Yangxiaolu;
Neu, John;
Blanchard, Andrew E.;
Lu, Ting;
You, Lingchong

Publication type:

Article

Elements and evolutionary determinants of genomic divergence between paired primary and metastatic tumors.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008838

By:

Sun, Ruping;
Nikolakopoulos, Athanasios N.

Publication type:

Article