Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 11

Results: 73

Protein domain-based prediction of drug/compound–target interactions and experimental validation on LIM kinases.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009171

By:

Doğan, Tunca;
Akhan Güzelcan, Ece;
Baumann, Marcus;
Koyas, Altay;
Atas, Heval;
Baxendale, Ian R.;
Martin, Maria;
Cetin-Atalay, Rengul

Publication type:

Article

Dissecting cascade computational components in spiking neural networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009640

By:

Jia, Shanshan;
Xing, Dajun;
Yu, Zhaofei;
Liu, Jian K.

Publication type:

Article

Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009560

By:

King, Sean B.;
Singh, Mona

Publication type:

Article

Binding induced functional domain motions in the argonaute characterized by adaptive advanced sampling.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009625

By:

Pourjafar-Dehkordi, Danial;
Zacharias, Martin

Publication type:

Article

Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009546

By:

Kos, Pavel I.;
Galitsyna, Aleksandra A.;
Ulianov, Sergey V.;
Gelfand, Mikhail S.;
Razin, Sergey V.;
Chertovich, Alexander V.

Publication type:

Article

HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009621

By:

Bhalla, Upinder S.

Publication type:

Article

Crowd control: Reducing individual estimation bias by sharing biased social information.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009590

By:

Jayles, Bertrand;
Sire, Clément;
Kurvers, Ralf H. J. M.

Publication type:

Article

Elastic energy savings and active energy cost in a simple model of running.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009608

By:

Schroeder, Ryan T.;
Kuo, Arthur D.

Publication type:

Article

Control of tissue homeostasis, tumorigenesis, and degeneration by coupled bidirectional bistable switches.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009606

By:

Avila, Diego Barra;
Melendez-Alvarez, Juan R.;
Tian, Xiao-Jun

Publication type:

Article

Sensory coding and contrast invariance emerge from the control of plastic inhibition over emergent selectivity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009566

By:

Larisch, René;
Gönner, Lorenz;
Teichmann, Michael;
Hamker, Fred H.

Publication type:

Article

A confirmation bias in perceptual decision-making due to hierarchical approximate inference.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009517

By:

Lange, Richard D.;
Chattoraj, Ankani;
Beck, Jeffrey M.;
Yates, Jacob L.;
Haefner, Ralf M.

Publication type:

Article

Integrating deep learning with microfluidics for biophysical classification of sickle red blood cells adhered to laminin.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008946

By:

Praljak, Niksa;
Iram, Shamreen;
Goreke, Utku;
Singh, Gundeep;
Hill, Ailis;
Gurkan, Umut A.;
Hinczewski, Michael

Publication type:

Article

Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008845

By:

Lima, Ernesto A. B. F.;
Faghihi, Danial;
Philley, Russell;
Yang, Jianchen;
Virostko, John;
Phillips, Caleb M.;
Yankeelov, Thomas E.

Publication type:

Article

Estimating the dimensionality of the manifold underlying multi-electrode neural recordings.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008591

By:

Altan, Ege;
Solla, Sara A.;
Miller, Lee E.;
Perreault, Eric J.

Publication type:

Article

Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009587

By:

Wang, Shun;
Hao, Mengqian;
Pan, Zishu;
Lei, Jinzhi;
Zou, Xiufen

Publication type:

Article

Deciphering conformational selectivity in the A<sub>2A</sub> adenosine G protein-coupled receptor by free energy simulations.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009152

By:

Jespers, Willem;
Heitman, Laura H.;
IJzerman, Adriaan P.;
Sotelo, Eddy;
van Westen, Gerard J. P.;
Åqvist, Johan;
Gutiérrez-de-Terán, Hugo

Publication type:

Article

CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009631

By:

Linheiro, Raquel;
Archer, John

Publication type:

Article

The meaning of significant mean group differences for biomarker discovery.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009477

By:

Loth, Eva;
Ahmad, Jumana;
Chatham, Chris;
López, Beatriz;
Carter, Ben;
Crawley, Daisy;
Oakley, Bethany;
Hayward, Hannah;
Cooke, Jennifer;
San José Cáceres, Antonia;
Bzdok, Danilo;
Jones, Emily;
Charman, Tony;
Beckmann, Christian;
Bourgeron, Thomas;
Toro, Roberto;
Buitelaar, Jan;
Murphy, Declan;
Dumas, Guillaume

Publication type:

Article

Cross-population coupling of neural activity based on Gaussian process current source densities.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009601

By:

Klein, Natalie;
Siegle, Joshua H.;
Teichert, Tobias;
Kass, Robert E.

Publication type:

Article

De novo protein fold families expand the designable ligand binding site space.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009620

By:

Pan, Xingjie;
Kortemme, Tanja

Publication type:

Article

Hybrid dedicated and distributed coding in PMd/M1 provides separation and interaction of bilateral arm signals.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009615

By:

Dixon, Tanner C.;
Merrick, Christina M.;
Wallis, Joni D.;
Ivry, Richard B.;
Carmena, Jose M.

Publication type:

Article

Modeling the effects of Aedes aegypti's larval environment on adult body mass at emergence.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009102

By:

Walker, Melody;
Chandrasegaran, Karthikeyan;
Vinauger, Clément;
Robert, Michael A.;
Childs, Lauren M.

Publication type:

Article

MGEnrichment: A web application for microglia gene list enrichment analysis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009160

By:

Jao, Justin;
Ciernia, Annie Vogel

Publication type:

Article

Attractive internuclear force drives the collective behavior of nuclear arrays in Drosophila embryos.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009605

By:

Wu, Xiaoxuan;
Kong, Kakit;
Xiao, Wenlei;
Liu, Feng

Publication type:

Article

Discriminative feature of cells characterizes cell populations of interest by a small subset of genes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009579

By:

Fujii, Takeru;
Maehara, Kazumitsu;
Fujita, Masatoshi;
Ohkawa, Yasuyuki

Publication type:

Article

Aedes-AI: Neural network models of mosquito abundance.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009467

By:

Kinney, Adrienne C.;
Current, Sean;
Lega, Joceline

Publication type:

Article

Inferred expression regulator activities suggest genes mediating cardiometabolic genetic signals.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009563

By:

Hoskins, Jason W.;
Chung, Charles C.;
O'Brien, Aidan;
Zhong, Jun;
Connelly, Katelyn;
Collins, Irene;
Shi, Jianxin;
Amundadottir, Laufey T.

Publication type:

Article

A nowcasting framework for correcting for reporting delays in malaria surveillance.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009570

By:

Menkir, Tigist F.;
Cox, Horace;
Poirier, Canelle;
Saul, Melanie;
Jones-Weekes, Sharon;
Clementson, Collette;
M. de Salazar, Pablo;
Santillana, Mauricio;
Buckee, Caroline O.

Publication type:

Article

Multivariable association discovery in population-scale meta-omics studies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009442

By:

Mallick, Himel;
Rahnavard, Ali;
McIver, Lauren J.;
Ma, Siyuan;
Zhang, Yancong;
Nguyen, Long H.;
Tickle, Timothy L.;
Weingart, George;
Ren, Boyu;
Schwager, Emma H.;
Chatterjee, Suvo;
Thompson, Kelsey N.;
Wilkinson, Jeremy E.;
Subramanian, Ayshwarya;
Lu, Yiren;
Waldron, Levi;
Paulson, Joseph N.;
Franzosa, Eric A.;
Bravo, Hector Corrada;
Huttenhower, Curtis

Publication type:

Article

Intriguing effects of selection intensity on the evolution of prosocial behaviors.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009611

By:

McAvoy, Alex;
Rao, Andrew;
Hauert, Christoph

Publication type:

Article

Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009449

By:

Sarmashghi, Shahab;
Balaban, Metin;
Rachtman, Eleonora;
Touri, Behrouz;
Mirarab, Siavash;
Bafna, Vineet

Publication type:

Article

Causal inference regulates audiovisual spatial recalibration via its influence on audiovisual perception.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008877

By:

Hong, Fangfang;
Badde, Stephanie;
Landy, Michael S.

Publication type:

Article

Binding free energy decomposition and multiple unbinding paths of buried ligands in a PreQ<sub>1</sub> riboswitch.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009603

By:

Hu, Guodong;
Zhou, Huan-Xiang

Publication type:

Article

Dynamic divisive normalization circuits explain and predict change detection in monkey area MT.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009595

By:

Ernst, Udo A.;
Chen, Xiao;
Bohnenkamp, Lisa;
Galashan, Fingal Orlando;
Wegener, Detlef

Publication type:

Article

Cluster size distribution of cells disseminating from a primary tumor.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009011

By:

Mukherjee, Mrinmoy;
Levine, Herbert

Publication type:

Article

Modelling the spatial and temporal constrains of the GABAergic influence on neuronal excitability.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009199

By:

Lombardi, Aniello;
Luhmann, Heiko J.;
Kilb, Werner

Publication type:

Article

Ten simple rules on writing clean and reliable open-source scientific software.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009481

By:

Hunter-Zinck, Haley;
de Siqueira, Alexandre Fioravante;
Vásquez, Váleri N.;
Barnes, Richard;
Martinez, Ciera C.

Publication type:

Article

Optimizing network propagation for multi-omics data integration.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009161

By:

Charmpi, Konstantina;
Chokkalingam, Manopriya;
Johnen, Ronja;
Beyer, Andreas

Publication type:

Article

Diverse processing underlying frequency integration in midbrain neurons of barn owls.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009569

By:

Gorman, Julia C.;
Tufte, Oliver L.;
Miller, Anna V. R.;
DeBello, William M.;
Peña, José L.;
Fischer, Brian J.

Publication type:

Article

DNA methylation-based classifier and gene expression signatures detect BRCAness in osteosarcoma.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009562

By:

Barenboim, Maxim;
Kovac, Michal;
Ameline, Baptiste;
Jones, David T. W.;
Witt, Olaf;
Bielack, Stefan;
Burdach, Stefan;
Baumhoer, Daniel;
Nathrath, Michaela

Publication type:

Article

MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009594

By:

Singh, Larry N.;
Ennis, Brian;
Loneragan, Bryn;
Tsao, Noah L.;
Lopez Sanchez, M. Isabel G.;
Li, Jianping;
Acheampong, Patrick;
Tran, Oanh;
Trounce, Ian A.;
Zhu, Yuankun;
Potluri, Prasanth;
Emanuel, Beverly S.;
Rader, Daniel J.;
Arany, Zoltan;
Damrauer, Scott M.;
Resnick, Adam C.;
Anderson, Stewart A.;
Wallace, Douglas C.

Publication type:

Article

Memories in a network with excitatory and inhibitory plasticity are encoded in the spiking irregularity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009593

By:

Gallinaro, Júlia V.;
Clopath, Claudia

Publication type:

Article

A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009582

By:

Jiang, Zhisheng;
Generoso, Serena F.;
Badia, Marta;
Payer, Bernhard;
Carey, Lucas B.

Publication type:

Article

ΔFBA—Predicting metabolic flux alterations using genome-scale metabolic models and differential transcriptomic data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009589

By:

Ravi, Sudharshan;
Gunawan, Rudiyanto

Publication type:

Article

Deciphering the molecular mechanism of the cancer formation by chromosome structural dynamics.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009596

By:

Chu, Xiakun;
Wang, Jin

Publication type:

Article

The experience of teaching introductory programming skills to bioscientists in Brazil.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009534

By:

Zuvanov, Luíza;
Basso Garcia, Ana Letycia;
Correr, Fernando Henrique;
Bizarria Jr, Rodolfo;
Filho, Ailton Pereira da Costa;
da Costa, Alisson Hayasi;
Thomaz, Andréa T.;
Pinheiro, Ana Lucia Mendes;
Riaño-Pachón, Diego Mauricio;
Winck, Flavia Vischi;
Esteves, Franciele Grego;
Margarido, Gabriel Rodrigues Alves;
Casagrande, Giovanna Maria Stanfoca;
Frajacomo, Henrique Cordeiro;
Martins, Leonardo;
Cavalheiro, Mariana Feitosa;
Grachet, Nathalia Graf;
da Silva, Raniere Gaia Costa;
Cerri, Ricardo;
Ramos, Rommel Thiago Juca

Publication type:

Article

Neural network features distinguish chemosensory stimuli in Caenorhabditis elegans.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009591

By:

How, Javier J.;
Navlakha, Saket;
Chalasani, Sreekanth H.

Publication type:

Article

Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009585

By:

Madssen, Torfinn S.;
Giskeødegård, Guro F.;
Smilde, Age K.;
Westerhuis, Johan A.

Publication type:

Article

Neurocomputational mechanism of controllability inference under a multi-agent setting.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009549

By:

Kim, Jaejoong;
Lee, Sang Wan;
Yoon, Seokho;
Park, Haeorm;
Jeong, Bumseok

Publication type:

Article

Approximate distance correlation for selecting highly interrelated genes across datasets.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009548

By:

Shen, Qunlun;
Zhang, Shihua

Publication type:

Article