Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 10

Results: 72

Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox's Bazar settlement.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009360

By:

Aylett-Bullock, Joseph;
Cuesta-Lazaro, Carolina;
Quera-Bofarull, Arnau;
Katta, Anjali;
Hoffmann Pham, Katherine;
Hoover, Benjamin;
Strobelt, Hendrik;
Moreno Jimenez, Rebeca;
Sedgewick, Aidan;
Samir Evers, Egmond;
Kennedy, David;
Harlass, Sandra;
Gidraf Kahindo Maina, Allen;
Hussien, Ahmad;
Luengo-Oroz, Miguel

Publication type:

Article

The network structure affects the fixation probability when it couples to the birth-death dynamics in finite population.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009537

By:

Dehghani, Mohammad Ali;
Darooneh, Amir Hossein;
Kohandel, Mohammad

Publication type:

Article

Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009471

By:

Lindau, Stacy Tessler;
Makelarski, Jennifer A.;
Kaligotla, Chaitanya;
Abramsohn, Emily M.;
Beiser, David G.;
Chou, Chiahung;
Collier, Nicholson;
Huang, Elbert S.;
Macal, Charles M.;
Ozik, Jonathan;
Tung, Elizabeth L.

Publication type:

Article

TwinCons: Conservation score for uncovering deep sequence similarity and divergence.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009541

By:

Penev, Petar I.;
Alvarez-Carreño, Claudia;
Smith, Eric;
Petrov, Anton S.;
Williams, Loren Dean

Publication type:

Article

Point-estimating observer models for latent cause detection.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009159

By:

Lee, Jennifer Laura;
Ma, Wei Ji

Publication type:

Article

Better tired than lost: Turtle ant trail networks favor coherence over short edges.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009523

By:

Chandrasekhar, Arjun;
Marshall, James A. R.;
Austin, Cortnea;
Navlakha, Saket;
Gordon, Deborah M.

Publication type:

Article

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009463

By:

Ramsey, Jolene;
McIntosh, Brenley;
Renfro, Daniel;
Aleksander, Suzanne A.;
LaBonte, Sandra;
Ross, Curtis;
Zweifel, Adrienne E.;
Liles, Nathan;
Farrar, Shabnam;
Gill, Jason J.;
Erill, Ivan;
Ades, Sarah;
Berardini, Tanya Z.;
Bennett, Jennifer A.;
Brady, Siobhan;
Britton, Robert;
Carbon, Seth;
Caruso, Steven M.;
Clements, Dave;
Dalia, Ritu

Publication type:

Article

Synergistic interventions to control COVID-19: Mass testing and isolation mitigates reliance on distancing.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009518

By:

Howerton, Emily;
Ferrari, Matthew J.;
Bjørnstad, Ottar N.;
Bogich, Tiffany L.;
Borchering, Rebecca K.;
Jewell, Chris P.;
Nichols, James D.;
Probert, William J. M.;
Runge, Michael C.;
Tildesley, Michael J.;
Viboud, Cécile;
Shea, Katriona

Publication type:

Article

Radio-frequency exposure of the yellow fever mosquito (A. aegypti) from 2 to 240 GHz.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009460

By:

De Borre, Eline;
Joseph, Wout;
Aminzadeh, Reza;
Müller, Pie;
Boone, Matthieu N.;
Josipovic, Iván;
Hashemizadeh, Sina;
Kuster, Niels;
Kühn, Sven;
Thielens, Arno

Publication type:

Article

Ten simple rules for training yourself in an emerging field.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009440

By:

Woelmer, Whitney M.;
Bradley, L. M.;
Haber, Lisa T.;
Klinges, David H.;
Lewis, Abigail S. L.;
Mohr, Elizabeth J.;
Torrens, Christa L.;
Wheeler, Kathryn I.;
Willson, Alyssa M.

Publication type:

Article

Spatial heterogeneity enhance robustness of large multi-species ecosystems.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008899

By:

Pettersson, Susanne;
Nilsson Jacobi, Martin

Publication type:

Article

Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009529

By:

Balakrishna, Suraj;
Salazar-Vizcaya, Luisa;
Schmidt, Axel J.;
Kachalov, Viacheslav;
Kusejko, Katharina;
Thurnheer, Maria Christine;
Roth, Jan A.;
Nicca, Dunja;
Cavassini, Matthias;
Battegay, Manuel;
Schmid, Patrick;
Bernasconi, Enos;
Günthard, Huldrych F.;
Rauch, Andri;
Kouyos, Roger D.

Publication type:

Article

NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009524

By:

Su, Shian;
Gouil, Quentin;
Blewitt, Marnie E.;
Cook, Dianne;
Hickey, Peter F.;
Ritchie, Matthew E.

Publication type:

Article

Determining travel fluxes in epidemic areas.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009473

By:

Chen, Daipeng;
Xue, Yuyi;
Xiao, Yanni

Publication type:

Article

Using ephaptic coupling to estimate the synaptic cleft resistivity of the calyx of Held synapse.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009527

By:

Sierksma, Martijn C.;
Borst, J. Gerard G.

Publication type:

Article

Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009535

By:

Kalkus, Antonina;
Barrett, Joy;
Ashok, Theyjasvi;
Morton, Brian R.

Publication type:

Article

Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008874

By:

Aponte-Serrano, Josua O.;
Weaver, Jordan J. A.;
Sego, T. J.;
Glazier, James A.;
Shoemaker, Jason E.

Publication type:

Article

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009482

By:

Daouda, Tariq;
Dumont-Lagacé, Maude;
Feghaly, Albert;
Benslimane, Yahya;
Panes, Rébecca;
Courcelles, Mathieu;
Benhammadi, Mohamed;
Harrington, Lea;
Thibault, Pierre;
Major, François;
Bengio, Yoshua;
Gagnon, Étienne;
Lemieux, Sébastien;
Perreault, Claude

Publication type:

Article

Correction: CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models.

Published in:

2021

By:

Thistlethwaite, Lillian R.;
Petrosyan, Varduhi;
Li, Xiqi;
Miller, Marcus J.;
Elsea, Sarah H.;
Milosavljevic, Aleksandar

Publication type:

Correction Notice

Complexity and diversity in sparse code priors improve receptive field characterization of Macaque V1 neurons.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009528

By:

Wu, Ziniu;
Rockwell, Harold;
Zhang, Yimeng;
Tang, Shiming;
Lee, Tai Sing

Publication type:

Article

Interplay between mobility, multi-seeding and lockdowns shapes COVID-19 local impact.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009326

By:

Mazzoli, Mattia;
Pepe, Emanuele;
Mateo, David;
Cattuto, Ciro;
Gauvin, Laetitia;
Bajardi, Paolo;
Tizzoni, Michele;
Hernando, Alberto;
Meloni, Sandro;
Ramasco, José J.

Publication type:

Article

OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009472

By:

Radev, Stefan T.;
Graw, Frederik;
Chen, Simiao;
Mutters, Nico T.;
Eichel, Vanessa M.;
Bärnighausen, Till;
Köthe, Ullrich

Publication type:

Article

Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009483

By:

Johnson, Ruth;
Burch, Kathryn S.;
Hou, Kangcheng;
Paciuc, Mario;
Pasaniuc, Bogdan;
Sankararaman, Sriram

Publication type:

Article

Atorvastatin-mediated rescue of cancer-related cognitive changes in combined anticancer therapies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009457

By:

Lee, Junho;
Kim, Jin Su;
Kim, Yangjin

Publication type:

Article

A data-driven approach for constructing mutation categories for mutational signature analysis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009542

By:

Gilad, Gal;
Leiserson, Mark D. M.;
Sharan, Roded

Publication type:

Article

PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008986

By:

Carpenter, Charlie M.;
Zhang, Weiming;
Gillenwater, Lucas;
Severn, Cameron;
Ghosh, Tusharkanti;
Bowler, Russell;
Kechris, Katerina;
Ghosh, Debashis

Publication type:

Article

Estimating ectopic beat probability with simplified statistical models that account for experimental uncertainty.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009536

By:

Jin, Qingchu;
Greenstein, Joseph L.;
Winslow, Raimond L.

Publication type:

Article

How conformity can lead to polarised social behaviour.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009530

By:

Panizza, Folco;
Vostroknutov, Alexander;
Coricelli, Giorgio

Publication type:

Article

Bioinformatics in Sudan: Status and challenges case study: The National University-Sudan.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009462

By:

Mohamed, Sofia B.;
Kambal, Sumaya;
Ibrahim, Sabah A. E.;
Abdalwhab, Esra;
Munir, Abdalla;
Ibrahim, Arwa;
Ali, Qurashi Mohamed

Publication type:

Article

Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009428

By:

Sugimoto, Ryota;
Nishimura, Luca;
Nguyen, Phuong Thanh;
Ito, Jumpei;
Parrish, Nicholas F.;
Mori, Hiroshi;
Kurokawa, Ken;
Nakaoka, Hirofumi;
Inoue, Ituro

Publication type:

Article

Extended graphical lasso for multiple interaction networks for high dimensional omics data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008794

By:

Xu, Yang;
Jiang, Hongmei;
Jiang, Wenxin

Publication type:

Article

On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009032

By:

Villaverde, Alejandro F.;
Massonis, Gemma

Publication type:

Article

Modular assembly of dynamic models in systems biology.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009513

By:

Pan, Michael;
Gawthrop, Peter J.;
Cursons, Joseph;
Crampin, Edmund J.

Publication type:

Article

pyActigraphy: Open-source python package for actigraphy data visualization and analysis.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009514

By:

Hammad, Grégory;
Reyt, Mathilde;
Beliy, Nikita;
Baillet, Marion;
Deantoni, Michele;
Lesoinne, Alexia;
Muto, Vincenzo;
Schmidt, Christina

Publication type:

Article

Experiment level curation of transcriptional regulatory interactions in neurodevelopment.

Published in:

2021

By:

Chu, Eric Ching-Pan;
Morin, Alexander;
Chang, Tak Hou Calvin;
Nguyen, Tue;
Tsai, Yi-Cheng;
Sharma, Aman;
Liu, Chao Chun;
Pavlidis, Paul

Publication type:

Literature Review

RgCop-A regularized copula based method for gene selection in single cell rna-seq data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009464

By:

Lall, Snehalika;
Ray, Sumanta;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009506

By:

Rutkowski, David M.;
Vavylonis, Dimitrios

Publication type:

Article

Time to revisit the endpoint dilution assay and to replace the TCID<sub>50</sub> as a measure of a virus sample's infection concentration.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009480

By:

Cresta, Daniel;
Warren, Donald C.;
Quirouette, Christian;
Smith, Amanda P.;
Lane, Lindey C.;
Smith, Amber M.;
Beauchemin, Catherine A. A.

Publication type:

Article

Factors affecting aerosol SARS-CoV-2 transmission via HVAC systems; a modeling study.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009474

By:

Cotman, Zachary J.;
Bowden, Michael J.;
Richter, Barrett P.;
Phelps, Joseph H.;
Dibble, Christopher J.

Publication type:

Article

Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009321

By:

Guignon, Valentin;
Breton, Catherine;
Mariette, Jérôme;
Sabot, François;
Fumey, Julien;
Lefort, Vincent;
Fiston-Lavier, Anna-Sophie

Publication type:

Article

Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008952

By:

Song, Yun Min;
Hong, Hyukpyo;
Kim, Jae Kyoung

Publication type:

Article

Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008755

By:

Weaver, Davis T.;
Pishas, Kathleen I.;
Williamson, Drew;
Scarborough, Jessica;
Lessnick, Stephen L.;
Dhawan, Andrew;
Scott, Jacob G.

Publication type:

Article

State transitions through inhibitory interneurons in a cortical network model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009521

By:

Bryson, Alexander;
Berkovic, Samuel F.;
Petrou, Steven;
Grayden, David B.

Publication type:

Article

Visual perception of texture regularity: Conjoint measurements and a wavelet response-distribution model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008802

By:

Sun, Hua-Chun;
St-Amand, David;
Baker Jr., Curtis L.;
Kingdom, Frederick A. A.

Publication type:

Article

Dynamics and turnover of memory CD8 T cell responses following yellow fever vaccination.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009468

By:

Zarnitsyna, Veronika I.;
Akondy, Rama S.;
Ahmed, Hasan;
McGuire, Donald J.;
Zarnitsyn, Vladimir G.;
Moore, Mia;
Johnson, Philip L. F.;
Ahmed, Rafi;
Li, Kelvin W.;
Hellerstein, Marc K.;
Antia, Rustom

Publication type:

Article

Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009502

By:

Zayats, Vasilina;
Perlinska, Agata P.;
Jarmolinska, Aleksandra I.;
Jastrzebski, Borys;
Dunin-Horkawicz, Stanislaw;
Sulkowska, Joanna I.

Publication type:

Article

Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns.

Published in:

2021

By:

Libbrecht, Maxwell W.;
Chan, Rachel C. W.;
Hoffman, Michael M.

Publication type:

Literature Review

The limitations, dangers, and benefits of simple methods for testing identifiability.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009425

By:

Castro, Mario;
de Boer, Rob J.

Publication type:

Article

Universal risk phenotype of US counties for flu-like transmission to improve county-specific COVID-19 incidence forecasts.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009363

By:

Huang, Yi;
Chattopadhyay, Ishanu

Publication type:

Article

Steady-state measures of visual suppression.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009507

By:

Baker, Daniel H.;
Vilidaite, Greta;
Wade, Alex R.

Publication type:

Article