Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 9

Results: 62

Increased comparability between RNA-Seq and microarray data by utilization of gene sets.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008295

By:

van der Kloet, Frans M.;
Buurmans, Jeroen;
Jonker, Martijs J.;
Smilde, Age K.;
Westerhuis, Johan A.

Publication type:

Article

Uncertainty-driven regulation of learning and exploration in adolescents: A computational account.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008276

By:

Jepma, Marieke;
Schaaf, Jessica V.;
Visser, Ingmar;
Huizenga, Hilde M.

Publication type:

Article

IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008238

By:

Politano, Gianfranco;
Benso, Alfredo

Publication type:

Article

Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008162

By:

Henco, Lara;
Diaconescu, Andreea O.;
Lahnakoski, Juha M.;
Brandi, Marie-Luise;
Hörmann, Sophia;
Hennings, Johannes;
Hasan, Alkomiet;
Papazova, Irina;
Strube, Wolfgang;
Bolis, Dimitris;
Schilbach, Leonhard;
Mathys, Christoph

Publication type:

Article

Cyclic transitions between higher order motifs underlie sustained asynchronous spiking in sparse recurrent networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007409

By:

Bojanek, Kyle;
Zhu, Yuqing;
MacLean, Jason

Publication type:

Article

Inferring a complete genotype-phenotype map from a small number of measured phenotypes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008243

By:

Sailer, Zachary R.;
Shafik, Sarah H.;
Summers, Robert L.;
Joule, Alex;
Patterson-Robert, Alice;
Martin, Rowena E.;
Harms, Michael J.

Publication type:

Article

Minimizing the number of optimizations for efficient community dynamic flux balance analysis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007786

By:

Brunner, James D.;
Chia, Nicholas

Publication type:

Article

Mutation bias interacts with composition bias to influence adaptive evolution.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008296

By:

Cano, Alejandro V.;
Payne, Joshua L.

Publication type:

Article

Tuning network dynamics from criticality to an asynchronous state.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008268

By:

Li, Jingwen;
Shew, Woodrow L.

Publication type:

Article

Characterizing chromatin folding coordinate and landscape with deep learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008262

By:

Xie, Wen Jun;
Qi, Yifeng;
Zhang, Bin

Publication type:

Article

A bacterial size law revealed by a coarse-grained model of cell physiology.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008245

By:

Bertaux, François;
von Kügelgen, Julius;
Marguerat, Samuel;
Shahrezaei, Vahid

Publication type:

Article

A simple, scalable approach to building a cross-platform transcriptome atlas.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008219

By:

Angel, Paul W.;
Rajab, Nadia;
Deng, Yidi;
Pacheco, Chris M.;
Chen, Tyrone;
Lê Cao, Kim-Anh;
Choi, Jarny;
Wells, Christine A.

Publication type:

Article

Domino-like transient dynamics at seizure onset in epilepsy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008206

By:

Creaser, Jennifer;
Lin, Congping;
Ridler, Thomas;
Brown, Jonathan T.;
D'Souza, Wendyl;
Seneviratne, Udaya;
Cook, Mark;
Terry, John R.;
Tsaneva-Atanasova, Krasimira

Publication type:

Article

Modeling the efficiency of filovirus entry into cells in vitro: Effects of SNP mutations in the receptor molecule.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007612

By:

Kim, Kwang Su;
Kondoh, Tatsunari;
Asai, Yusuke;
Takada, Ayato;
Iwami, Shingo

Publication type:

Article

Short-term depression and long-term plasticity together tune sensitive range of synaptic plasticity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008265

By:

Deperrois, Nicolas;
Graupner, Michael

Publication type:

Article

A greedy classifier optimization strategy to assess ion channel blocking activity and pro-arrhythmia in hiPSC-cardiomyocytes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008203

By:

Raphel, Fabien;
De Korte, Tessa;
Lombardi, Damiano;
Braam, Stefan;
Gerbeau, Jean-Frederic

Publication type:

Article

Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008190

By:

ten Bosch, Quirine A.;
Wagman, Joseph M.;
Castro-Llanos, Fanny;
Achee, Nicole L.;
Grieco, John P.;
Perkins, T. Alex

Publication type:

Article

Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008191

By:

Mukherjee, Rajib;
Beykal, Burcu;
Szafran, Adam T.;
Onel, Melis;
Stossi, Fabio;
Mancini, Maureen G.;
Lloyd, Dillon;
Wright, Fred A.;
Zhou, Lan;
Mancini, Michael A.;
Pistikopoulos, Efstratios N.

Publication type:

Article

Ten simple rules to make your research more sustainable.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008148

By:

Ligozat, Anne-Laure;
Névéol, Aurélie;
Daly, Bénédicte;
Frenoux, Emmanuelle

Publication type:

Article

Efficient sensory coding of multidimensional stimuli.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008146

By:

Yerxa, Thomas E.;
Kee, Eric;
DeWeese, Michael R.;
Cooper, Emily A.

Publication type:

Article

Buffering and total calcium levels determine the presence of oscillatory regimes in cardiac cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007728

By:

Marchena, Miquel;
Echebarria, Blas;
Shiferaw, Yohannes;
Alvarez-Lacalle, Enrique

Publication type:

Article

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008270

By:

P. E. de Souza, Camila;
Andronescu, Mirela;
Masud, Tehmina;
Kabeer, Farhia;
Biele, Justina;
Laks, Emma;
Lai, Daniel;
Ye, Patricia;
Brimhall, Jazmine;
Wang, Beixi;
Su, Edmund;
Hui, Tony;
Cao, Qi;
Wong, Marcus;
Moksa, Michelle;
Moore, Richard A.;
Hirst, Martin;
Aparicio, Samuel;
Shah, Sohrab P.

Publication type:

Article

Identifying locations of re-entrant drivers from patient-specific distribution of fibrosis in the left atrium.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008086

By:

Roy, Aditi;
Varela, Marta;
Chubb, Henry;
MacLeod, Robert;
Hancox, Jules C.;
Schaeffter, Tobias;
Aslanidi, Oleg

Publication type:

Article

A compiler for biological networks on silicon chips.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008063

By:

Medley, J. Kyle;
Teo, Jonathan;
Woo, Sung Sik;
Hellerstein, Joseph;
Sarpeshkar, Rahul;
Sauro, Herbert M.

Publication type:

Article

Alcoholic liver disease: A registry view on comorbidities and disease prediction.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008244

By:

Grissa, Dhouha;
Nytoft Rasmussen, Ditlev;
Krag, Aleksander;
Brunak, Søren;
Juhl Jensen, Lars

Publication type:

Article

Prospects for detecting early warning signals in discrete event sequence data: Application to epidemiological incidence data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007836

By:

Southall, Emma;
Tildesley, Michael J.;
Dyson, Louise

Publication type:

Article

Fast estimation of time-varying infectious disease transmission rates.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008124

By:

Jagan, Mikael;
deJonge, Michelle S.;
Krylova, Olga;
Earn, David J. D.

Publication type:

Article

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008103

By:

Pavlovicz, Ryan E.;
Park, Hahnbeom;
DiMaio, Frank

Publication type:

Article

Nonlinear stimulus representations in neural circuits with approximate excitatory-inhibitory balance.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008192

By:

Baker, Cody;
Zhu, Vicky;
Rosenbaum, Robert

Publication type:

Article

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008173

By:

Kim, Hyeon-Jin;
Yardımcı, Galip Gurkan;
Bonora, Giancarlo;
Ramani, Vijay;
Liu, Jie;
Qiu, Ruolan;
Lee, Choli;
Hesson, Jennifer;
Ware, Carol B.;
Shendure, Jay;
Duan, Zhijun;
Noble, William Stafford

Publication type:

Article

All-atom simulation of the HET-s prion replication.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007922

By:

Terruzzi, Luca;
Spagnolli, Giovanni;
Boldrini, Alberto;
Requena, Jesús R.;
Biasini, Emiliano;
Faccioli, Pietro

Publication type:

Article

Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008269

By:

Zhao, Zhengqiao;
Sokhansanj, Bahrad A.;
Malhotra, Charvi;
Zheng, Kitty;
Rosen, Gail L.

Publication type:

Article

Ten simple rules for writing scientific op-ed articles.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008187

By:

Goh, Hoe-Han;
Bourne, Philip

Publication type:

Article

A new Graph Gaussian embedding method for analyzing the effects of cognitive training.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008186

By:

Xu, Mengjia;
Wang, Zhijiang;
Zhang, Haifeng;
Pantazis, Dimitrios;
Wang, Huali;
Li, Quanzheng

Publication type:

Article

Response nonlinearities in networks of spiking neurons.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008165

By:

Sanzeni, Alessandro;
Histed, Mark H.;
Brunel, Nicolas

Publication type:

Article

The relative contributions of infectious and mitotic spread to HTLV-1 persistence.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007470

By:

Laydon, Daniel J.;
Sunkara, Vikram;
Boelen, Lies;
Bangham, Charles R. M.;
Asquith, Becca

Publication type:

Article

DeepHE: Accurately predicting human essential genes based on deep learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008229

By:

Zhang, Xue;
Xiao, Wangxin;
Xiao, Weijia

Publication type:

Article

Discovering functional sequences with RELICS, an analysis method for CRISPR screens.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008194

By:

Fiaux, Patrick C.;
Chen, Hsiuyi V.;
Chen, Poshen B.;
Chen, Aaron R.;
McVicker, Graham

Publication type:

Article

A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008198

By:

Wei, Ziqiang;
Lin, Bei-Jung;
Chen, Tsai-Wen;
Daie, Kayvon;
Svoboda, Karel;
Druckmann, Shaul

Publication type:

Article

MONET: Multi-omic module discovery by omic selection.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008182

By:

Rappoport, Nimrod;
Safra, Roy;
Shamir, Ron

Publication type:

Article

Kinetic modeling of H<sub>2</sub>O<sub>2</sub> dynamics in the mitochondria of HeLa cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008202

By:

Stein, Kassi T.;
Moon, Sun Jin;
Nguyen, Athena N.;
Sikes, Hadley D.

Publication type:

Article

NuSeT: A deep learning tool for reliably separating and analyzing crowded cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008193

By:

Yang, Linfeng;
Ghosh, Rajarshi P.;
Franklin, J. Matthew;
Chen, Simon;
You, Chenyu;
Narayan, Raja R.;
Melcher, Marc L.;
Liphardt, Jan T.

Publication type:

Article

Genetic buffering and potentiation in metabolism.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008185

By:

Poyatos, Juan F.

Publication type:

Article

Effects of spatial heterogeneity on bacterial genetic circuits.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008159

By:

Barajas, Carlos;
Del Vecchio, Domitilla

Publication type:

Article

A disordered encounter complex is central to the yeast Abp1p SH3 domain binding pathway.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007815

By:

Gerlach, Gabriella J.;
Carrock, Rachel;
Stix, Robyn;
Stollar, Elliott J.;
Ball, K. Aurelia

Publication type:

Article

Providing new insights on the biphasic lifestyle of the predatory bacterium Bdellovibrio bacteriovorus through genome-scale metabolic modeling.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007646

By:

Herencias, Cristina;
Salgado-Briegas, Sergio;
Prieto, María A.;
Nogales, Juan

Publication type:

Article

Ten quick tips for teaching with participatory live coding.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008090

By:

Nederbragt, Alexander;
Harris, Rayna Michelle;
Hill, Alison Presmanes;
Wilson, Greg

Publication type:

Article

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008205

By:

Tran, Thinh N.;
Bader, Gary D.

Publication type:

Article

Similarities and differences in spatial and non-spatial cognitive maps.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008149

By:

Wu, Charley M.;
Schulz, Eric;
Garvert, Mona M.;
Meder, Björn;
Schuck, Nicolas W.

Publication type:

Article

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008195

By:

Wen, Wei Xiong;
Mead, Adam J.;
Thongjuea, Supat

Publication type:

Article