Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 7

Results: 61

Regional sequence expansion or collapse in heterozygous genome assemblies.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008104

By:

Asalone, Kathryn C.;
Ryan, Kara M.;
Yamadi, Maryam;
Cohen, Annastelle L.;
Farmer, William G.;
George, Deborah J.;
Joppert, Claudia;
Kim, Kaitlyn;
Mughal, Madeeha Froze;
Said, Rana;
Toksoz-Exley, Metin;
Bisk, Evgeny;
Bracht, John R.

Publication type:

Article

Cortical ignition dynamics is tightly linked to the core organisation of the human connectome.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007686

By:

Castro, Samy;
El-Deredy, Wael;
Battaglia, Demian;
Orio, Patricio

Publication type:

Article

Emergent neutrality in consumer-resource dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008102

By:

D'Andrea, Rafael;
Gibbs, Theo;
O'Dwyer, James P.

Publication type:

Article

ADP is the dominant controller of AMP-activated protein kinase activity dynamics in skeletal muscle during exercise.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008079

By:

Coccimiglio, Ian F.;
Clarke, David C.

Publication type:

Article

Electrical coupling controls dimensionality and chaotic firing of inferior olive neurons.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008075

By:

Hoang, Huu;
Lang, Eric J.;
Hirata, Yoshito;
Tokuda, Isao T.;
Aihara, Kazuyuki;
Toyama, Keisuke;
Kawato, Mitsuo;
Schweighofer, Nicolas

Publication type:

Article

Quorum sensing via dynamic cytokine signaling comprehensively explains divergent patterns of effector choice among helper T cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008051

By:

Schrom II, Edward C.;
Levin, Simon A.;
Graham, Andrea L.

Publication type:

Article

Ten simple rules for reading a scientific paper.

Published in:

2020

By:

Carey, Maureen A.;
Steiner, Kevin L.;
Petri, William A.

Publication type:

Editorial

An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008110

By:

Schneider, Philipp;
von Kamp, Axel;
Klamt, Steffen

Publication type:

Article

Spatial and temporal patterns of nitric oxide diffusion and degradation drive emergent cerebrovascular dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008069

By:

Haselden, William Davis;
Kedarasetti, Ravi Teja;
Drew, Patrick J.

Publication type:

Article

Temperature-robust activity patterns arise from coordinated axonal Sodium channel properties.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008057

By:

DeMaegd, Margaret L.;
Stein, Wolfgang

Publication type:

Article

A circuit model of auditory cortex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008016

By:

Park, Youngmin;
Geffen, Maria N.

Publication type:

Article

scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007471

By:

Zheng, Xiao;
Huang, Yuan;
Zou, Xiufen

Publication type:

Article

A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer's disease.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008099

By:

Park, Jinhee;
Kim, Hyerin;
Kim, Jaekwang;
Cheon, Mookyung

Publication type:

Article

Depth in convolutional neural networks solves scene segmentation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008022

By:

Seijdel, Noor;
Tsakmakidis, Nikos;
de Haan, Edward H. F.;
Bohte, Sander M.;
Scholte, H. Steven

Publication type:

Article

The location of the axon initial segment affects the bandwidth of spike initiation dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008087

By:

Verbist, Christophe;
Müller, Michael G.;
Mansvelder, Huibert D.;
Legenstein, Robert;
Giugliano, Michele

Publication type:

Article

Signaling models for dopamine-dependent temporal contiguity in striatal synaptic plasticity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008078

By:

Urakubo, Hidetoshi;
Yagishita, Sho;
Kasai, Haruo;
Ishii, Shin

Publication type:

Article

Nine quick tips for efficient bioinformatics curriculum development and training.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008007

By:

McClatchy, Susan;
Bass, Kristin M.;
Gatti, Daniel M.;
Moylan, Adam;
Churchill, Gary

Publication type:

Article

A framework to assess the quality and impact of bioinformatics training across ELIXIR.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007976

By:

Gurwitz, Kim T.;
Singh Gaur, Prakash;
Bellis, Louisa J.;
Larcombe, Lee;
Alloza, Eva;
Balint, Balint Laszlo;
Botzki, Alexander;
Dimec, Jure;
Dominguez del Angel, Victoria;
Fernandes, Pedro L.;
Korpelainen, Eija;
Krause, Roland;
Kuzak, Mateusz;
Le Pera, Loredana;
Leskošek, Brane;
Lindvall, Jessica M.;
Marek, Diana;
Martinez, Paula A.;
Muyldermans, Tuur;
Nygård, Ståle

Publication type:

Article

An in vitro quantitative systems pharmacology approach for deconvolving mechanisms of drug-induced, multilineage cytopenias.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007620

By:

Wilson, Jennifer L.;
Lu, Dan;
Corr, Nick;
Fullerton, Aaron;
Lu, James

Publication type:

Article

Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008052

By:

Bucur, Doina;
Holme, Petter

Publication type:

Article

Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007553

By:

Moi, David;
Kilchoer, Laurent;
Aguilar, Pablo S.;
Dessimoz, Christophe

Publication type:

Article

Capsule networks as recurrent models of grouping and segmentation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008017

By:

Doerig, Adrien;
Schmittwilken, Lynn;
Sayim, Bilge;
Manassi, Mauro;
Herzog, Michael H.

Publication type:

Article

Multidimensional phenotyping predicts lifespan and quantifies health in C. elegans.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008002

By:

Martineau, Céline N.;
Brown, André E. X.;
Laurent, Patrick

Publication type:

Article

Predicting lymphatic filariasis elimination in data-limited settings: A reconstructive computational framework for combining data generation and model discovery.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007506

By:

Smith, Morgan E.;
Griswold, Emily;
Singh, Brajendra K.;
Miri, Emmanuel;
Eigege, Abel;
Adelamo, Solomon;
Umaru, John;
Nwodu, Kenrick;
Sambo, Yohanna;
Kadimbo, Jonathan;
Danyobi, Jacob;
Richards, Frank O.;
Michael, Edwin

Publication type:

Article

Bayesian modelling of high-throughput sequencing assays with malacoda.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007504

By:

Ghazi, Andrew R.;
Kong, Xianguo;
Chen, Ed S.;
Edelstein, Leonard C.;
Shaw, Chad A.

Publication type:

Article

Cross-species regulatory sequence activity prediction.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008050

By:

Kelley, David R.

Publication type:

Article

A novel riboswitch classification based on imbalanced sequences achieved by machine learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007760

By:

Beyene, Solomon Shiferaw;
Ling, Tianyi;
Ristevski, Blagoj;
Chen, Ming

Publication type:

Article

Mathematical modeling of plant cell fate transitions controlled by hormonal signals.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007523

By:

Klawe, Filip Z.;
Stiehl, Thomas;
Bastian, Peter;
Gaillochet, Christophe;
Lohmann, Jan U.;
Marciniak-Czochra, Anna

Publication type:

Article

Computational principles of neural adaptation for binaural signal integration.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008020

By:

Oess, Timo;
Ernst, Marc O.;
Neumann, Heiko

Publication type:

Article

Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008015

By:

Ordyan, Mariam;
Bartol, Tom;
Kennedy, Mary;
Rangamani, Padmini;
Sejnowski, Terrence

Publication type:

Article

AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007980

By:

Page, Andrew J.;
Bastkowski, Sarah;
Yasir, Muhammad;
Turner, A. Keith;
Le Viet, Thanh;
Savva, George M.;
Webber, Mark A.;
Charles, Ian G.

Publication type:

Article

Estimation of neuron parameters from imperfect observations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008053

By:

Taylor, Joseph D.;
Winnall, Samuel;
Nogaret, Alain

Publication type:

Article

Data-driven contact structures: From homogeneous mixing to multilayer networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008035

By:

Aleta, Alberto;
Ferraz de Arruda, Guilherme;
Moreno, Yamir

Publication type:

Article

iDrug: Integration of drug repositioning and drug-target prediction via cross-network embedding.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008040

By:

Chen, Huiyuan;
Cheng, Feixiong;
Li, Jing

Publication type:

Article

A mathematical model for persistent post-CSD vasoconstriction.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007996

By:

Xu, Shixin;
Chang, Joshua C.;
Chow, Carson C.;
Brennan, Kevin C.;
Huang, Huaxiong

Publication type:

Article

Perturbation biology links temporal protein changes to drug responses in a melanoma cell line.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007909

By:

Nyman, Elin;
Stein, Richard R.;
Jing, Xiaohong;
Wang, Weiqing;
Marks, Benjamin;
Zervantonakis, Ioannis K.;
Korkut, Anil;
Gauthier, Nicholas P.;
Sander, Chris

Publication type:

Article

Towards optogenetic vision restoration with high resolution.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007857

By:

Ferrari, Ulisse;
Deny, Stéphane;
Sengupta, Abhishek;
Caplette, Romain;
Trapani, Francesco;
Sahel, José-Alain;
Dalkara, Deniz;
Picaud, Serge;
Duebel, Jens;
Marre, Olivier

Publication type:

Article

Heart failure-induced atrial remodelling promotes electrical and conduction alternans.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008048

By:

Zhao, Na;
Li, Qince;
Zhang, Kevin;
Wang, Kuanquan;
He, Runnan;
Yuan, Yongfeng;
Zhang, Henggui

Publication type:

Article

Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008012

By:

Mallory, Xian F.;
Edrisi, Mohammadamin;
Navin, Nicholas;
Nakhleh, Luay

Publication type:

Article

Heterogeneous, delayed-onset killing by multiple-hitting T cells: Stochastic simulations to assess methods for analysis of imaging data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007972

By:

Beck, Richard J.;
Bijker, Dario I.;
Beltman, Joost B.

Publication type:

Article

Unravelling the γ-butyrolactone network in Streptomyces coelicolor by computational ensemble modelling.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008039

By:

Tsigkinopoulou, Areti;
Takano, Eriko;
Breitling, Rainer

Publication type:

Article

Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008038

By:

Levin, Doron;
Tuller, Tamir

Publication type:

Article

The interplay between somatic and dendritic inhibition promotes the emergence and stabilization of place fields.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007955

By:

Pedrosa, Victor;
Clopath, Claudia

Publication type:

Article

AncesTree: An interactive immunoglobulin lineage tree visualizer.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007731

By:

Foglierini, Mathilde;
Pappas, Leontios;
Lanzavecchia, Antonio;
Corti, Davide;
Perez, Laurent

Publication type:

Article

Socioeconomic bias in influenza surveillance.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007941

By:

Scarpino, Samuel V.;
Scott, James G.;
Eggo, Rosalind M.;
Clements, Bruce;
Dimitrov, Nedialko B.;
Meyers, Lauren Ancel

Publication type:

Article

Immunization strategies in networks with missing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007897

By:

Rosenblatt, Samuel F.;
Smith, Jeffrey A.;
Gauthier, G. Robin;
Hébert-Dufresne, Laurent

Publication type:

Article

Real time structural search of the protein data bank.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007970

By:

Guzenko, Dmytro;
Burley, Stephen K.;
Duarte, Jose M.

Publication type:

Article

Is mammography screening beneficial: An individual-based stochastic model for breast cancer incidence and mortality.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008036

By:

Le, Thuy T. T.;
Adler, Frederick R.

Publication type:

Article

OSS-DBS: Open-source simulation platform for deep brain stimulation with a comprehensive automated modeling.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008023

By:

Butenko, Konstantin;
Bahls, Christian;
Schröder, Max;
Köhling, Rüdiger;
van Rienen, Ursula

Publication type:

Article

Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1008010

By:

Krieger, Madison S.;
Denison, Carson E.;
Anderson, Thayer L.;
Nowak, Martin A.;
Hill, Alison L.

Publication type:

Article