Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 6

Results: 60

Statistical analysis of 3D localisation microscopy images for quantification of membrane protein distributions in a platelet clot model.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007902

By:

Mayr, Sandra;
Hauser, Fabian;
Puthukodan, Sujitha;
Axmann, Markus;
Göhring, Janett;
Jacak, Jaroslaw

Publication type:

Article

Forecasting unprecedented ecological fluctuations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008021

By:

Bray, Samuel R.;
Wang, Bo

Publication type:

Article

Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008001

By:

Evans, Ethan D.;
Dai, Chengzhen;
Isazadeh, Siavash;
Park, Shinkyu;
Ratti, Carlo;
Alm, Eric J.

Publication type:

Article

Multiplexing rhythmic information by spike timing dependent plasticity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008000

By:

Sherf, Nimrod;
Maoz, Shamir

Publication type:

Article

Stochastic ordering of complexoform protein assembly by genetic circuits.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007997

By:

Jensen, Mikkel Herholdt;
Morris, Eliza J.;
Tran, Hai;
Nash, Michael A.;
Tan, Cheemeng

Publication type:

Article

It's about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007982

By:

Korsbo, Niklas;
Jönsson, Henrik

Publication type:

Article

Emergence of cooperative bistability and robustness of gene regulatory networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007969

By:

Nagata, Shintaro;
Kikuchi, Macoto

Publication type:

Article

Resilience of three-dimensional sinusoidal networks in liver tissue.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007965

By:

Karschau, Jens;
Scholich, André;
Wise, Jonathan;
Morales-Navarrete, Hernán;
Kalaidzidis, Yannis;
Zerial, Marino;
Friedrich, Benjamin M.

Publication type:

Article

Mechanistic model of hormonal contraception.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007848

By:

Wright, A. Armean;
Fayad, Ghassan N.;
Selgrade, James F.;
Olufsen, Mette S.

Publication type:

Article

Model-based approach for predicting the impact of genetic modifications on product yield in biopharmaceutical manufacturing—Application to influenza vaccine production.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007810

By:

Duvigneau, Stefanie;
Dürr, Robert;
Laske, Tanja;
Bachmann, Mandy;
Dostert, Melanie;
Kienle, Achim

Publication type:

Article

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007981

By:

Zimin, Aleksey V.;
Salzberg, Steven L.

Publication type:

Article

A systematic approach to decipher crosstalk in the p53 signaling pathway using single cell dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007901

By:

Konrath, Fabian;
Mittermeier, Anna;
Cristiano, Elena;
Wolf, Jana;
Loewer, Alexander

Publication type:

Article

Epigenome-based splicing prediction using a recurrent neural network.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1008006

By:

Lee, Donghoon;
Zhang, Jing;
Liu, Jason;
Gerstein, Mark

Publication type:

Article

Mechanobiological model for simulation of injured cartilage degradation via pro-inflammatory cytokines and mechanical stimulus.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007998

By:

Eskelinen, Atte S. A.;
Tanska, Petri;
Florea, Cristina;
Orozco, Gustavo A.;
Julkunen, Petro;
Grodzinsky, Alan J.;
Korhonen, Rami K.

Publication type:

Article

Ten simple rules for researchers while in isolation from a pandemic.

Published in:

2020

By:

Goh, Hoe-Han;
Bourne, Philip E.

Publication type:

Editorial

A validation framework for neuroimaging software: The case of population receptive fields.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007924

By:

Lerma-Usabiaga, Garikoitz;
Benson, Noah;
Winawer, Jonathan;
Wandell, Brian A.

Publication type:

Article

Co-localization and confinement of ecto-nucleotidases modulate extracellular adenosine nucleotide distributions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007903

By:

Rahmaninejad, Hadi;
Pace, Tom;
Bhatt, Shashank;
Sun, Bin;
Kekenes-Huskey, Peter

Publication type:

Article

Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007892

By:

Saad-Roy, Chadi M.;
Arinaminpathy, Nimalan;
Wingreen, Ned S.;
Levin, Simon A.;
Akey, Joshua M.;
Grenfell, Bryan T.

Publication type:

Article

Natural scene statistics predict how humans pool information across space in surface tilt estimation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007947

By:

Kim, Seha;
Burge, Johannes

Publication type:

Article

Representation of foreseeable choice outcomes in orbitofrontal cortex triplet-wise interactions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007862

By:

Balaguer-Ballester, Emili;
Nogueira, Ramon;
Abofalia, Juan M.;
Moreno-Bote, Ruben;
Sanchez-Vives, Maria V.

Publication type:

Article

Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007417

By:

Rosenbauer, Jakob;
Zhang, Chengting;
Mattes, Benjamin;
Reinartz, Ines;
Wedgwood, Kyle;
Schindler, Simone;
Sinner, Claude;
Scholpp, Steffen;
Schug, Alexander

Publication type:

Article

Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007977

By:

Nouri, Nima;
Kleinstein, Steven H.

Publication type:

Article

Assessing predictors for new post translational modification sites: A case study on hydroxylation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007967

By:

Piovesan, Damiano;
Hatos, Andras;
Minervini, Giovanni;
Quaglia, Federica;
Monzon, Alexander Miguel;
Tosatto, Silvio C. E.

Publication type:

Article

Combined model-free and model-sensitive reinforcement learning in non-human primates.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007944

By:

Miranda, Bruno;
Malalasekera, W. M. Nishantha;
Behrens, Timothy E.;
Dayan, Peter;
Kennerley, Steven W.

Publication type:

Article

Multiscale modeling of human cerebrovasculature: A hybrid approach using image-based geometry and a mathematical algorithm.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007943

By:

Ii, Satoshi;
Kitade, Hiroki;
Ishida, Shunichi;
Imai, Yohsuke;
Watanabe, Yoshiyuki;
Wada, Shigeo

Publication type:

Article

Classifying sex and strain from mouse ultrasonic vocalizations using deep learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007918

By:

Ivanenko, A.;
Watkins, P.;
van Gerven, M. A. J.;
Hammerschmidt, K.;
Englitz, B.

Publication type:

Article

Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007942

By:

Savelyev, Alexey;
Gorbet, Gary E.;
Henrickson, Amy;
Demeler, Borries

Publication type:

Article

A crowdsourced set of curated structural variants for the human genome.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007933

By:

Chapman, Lesley M.;
Spies, Noah;
Pai, Patrick;
Lim, Chun Shen;
Carroll, Andrew;
Narzisi, Giuseppe;
Watson, Christopher M.;
Proukakis, Christos;
Clarke, Wayne E.;
Nariai, Naoki;
Dawson, Eric;
Jones, Garan;
Blankenberg, Daniel;
Brueffer, Christian;
Xiao, Chunlin;
Kolora, Sree Rohit Raj;
Alexander, Noah;
Wolujewicz, Paul;
Ahmed, Azza;
Smith, Graeme

Publication type:

Article

Spiking network optimized for word recognition in noise predicts auditory system hierarchy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007558

By:

Khatami, Fatemeh;
Escabí, Monty A.

Publication type:

Article

Early transmission of sensitive strain slows down emergence of drug resistance in Plasmodium vivax.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007945

By:

Ayala, Mario J. C.;
Villela, Daniel A. M.

Publication type:

Article

Circuits with broken fibration symmetries perform core logic computations in biological networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007776

By:

Leifer, Ian;
Morone, Flaviano;
Reis, Saulo D. S.;
Andrade, José S.;
Sigman, Mariano;
Makse, Hernán A.

Publication type:

Article

Dynamic interactions of influenza viruses in Hong Kong during 1998-2018.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007989

By:

Yang, Wan;
Lau, Eric H. Y.;
Cowling, Benjamin J.

Publication type:

Article

XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007973

By:

Xiao, Will;
Kreiman, Gabriel

Publication type:

Article

bigPint: A Bioconductor visualization package that makes big data pint-sized.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007912

By:

Rutter, Lindsay;
Cook, Dianne

Publication type:

Article

Kilohertz waveforms optimized to produce closed-state Na<sup>+</sup> channel inactivation eliminate onset response in nerve conduction block.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007766

By:

Yi, Guosheng;
Grill, Warren M.

Publication type:

Article

A systematic evaluation of Mycobacterium tuberculosis Genome-Scale Metabolic Networks.

Published in:

2020

By:

López-Agudelo, Víctor A.;
Mendum, Tom A.;
Laing, Emma;
Wu, HuiHai;
Baena, Andres;
Barrera, Luis F.;
Beste, Dany J. V.;
Rios-Estepa, Rigoberto

Publication type:

Literature Review

A mechanistic, stigmergy model of territory formation in solitary animals: Territorial behavior can dampen disease prevalence but increase persistence.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007457

By:

White, Lauren A.;
VandeWoude, Sue;
Craft, Meggan E.

Publication type:

Article

Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007693

By:

Li, Xiaona;
Ni, Qin;
He, Xiuxiu;
Kong, Jun;
Lim, Soon-Mi;
Papoian, Garegin A.;
Trzeciakowski, Jerome P.;
Trache, Andreea;
Jiang, Yi

Publication type:

Article

A functional spiking-neuron model of activity-silent working memory in humans based on calcium-mediated short-term synaptic plasticity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007936

By:

Pals, Matthijs;
Stewart, Terrence C.;
Akyürek, Elkan G.;
Borst, Jelmer P.

Publication type:

Article

A framework for integrating directed and undirected annotations to build explanatory models of cis-eQTL data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007770

By:

Lamparter, David;
Bhatnagar, Rajat;
Hebestreit, Katja;
Belgard, T. Grant;
Zhang, Alice;
Hanson-Smith, Victor

Publication type:

Article

Dimensional reduction of emergent spatiotemporal cortical dynamics via a maximum entropy moment closure.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007265

By:

Shao, Yuxiu;
Zhang, Jiwei;
Tao, Louis

Publication type:

Article

Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007968

By:

Yu, Hui;
Zhao, Shilin;
Ness, Scott;
Kang, Huining;
Sheng, Quanhu;
Samuels, David C.;
Oyebamiji, Olufunmilola;
Zhao, Ying-yong;
Guo, Yan

Publication type:

Article

Measurable health effects associated with the daylight saving time shift.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007927

By:

Zhang, Hanxin;
Dahlén, Torsten;
Khan, Atif;
Edgren, Gustaf;
Rzhetsky, Andrey

Publication type:

Article

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007447

By:

Lowegard, Anna U.;
Frenkel, Marcel S.;
Holt, Graham T.;
Jou, Jonathan D.;
Ojewole, Adegoke A.;
Donald, Bruce R.

Publication type:

Article

Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007925

By:

Hu, Yu;
Wang, Kai;
Li, Mingyao

Publication type:

Article

Two-variable nullcline analysis of ionic general equilibrium predicts calcium homeostasis in ventricular myocytes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007572

By:

Conesa, David;
Echebarria, Blas;
Peñaranda, Angelina;
Cantalapiedra, Inmaculada R.;
Shiferaw, Yohannes;
Alvarez-Lacalle, Enrique

Publication type:

Article

Epidemiological consequences of enduring strain-specific immunity requiring repeated episodes of infection.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007182

By:

Chisholm, Rebecca H.;
Sonenberg, Nikki;
Lacey, Jake A.;
McDonald, Malcolm I.;
Pandey, Manisha;
Davies, Mark R.;
Tong, Steven Y. C.;
McVernon, Jodie;
Geard, Nicholas

Publication type:

Article

HemoMIPs—Automated analysis and result reporting pipeline for targeted sequencing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007956

By:

Kleinert, Philip;
Martin, Beth;
Kircher, Martin

Publication type:

Article

Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007929

By:

Sevlever, Federico;
Di Bella, Juan Pablo;
Ventura, Alejandra C.

Publication type:

Article

Atomistic mechanism of transmembrane helix association.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007919

By:

Domański, Jan;
Sansom, Mark S. P.;
Stansfeld, Phillip J.;
Best, Robert B.

Publication type:

Article