Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 3

Results: 49

A model of tuberculosis clustering in low incidence countries reveals more transmission in the United Kingdom than the Netherlands between 2010 and 2015.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007687

By:

Brooks-Pollock, Ellen;
Danon, Leon;
Korthals Altes, Hester;
Davidson, Jennifer A.;
Pollock, Andrew M. T.;
van Soolingen, Dick;
Campbell, Colin;
Lalor, Maeve K.

Publication type:

Article

The spread of a wild plant pathogen is driven by the road network.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007703

By:

Numminen, Elina;
Laine, Anna-Liisa

Publication type:

Article

Uncoupling the roles of firing rates and spike bursts in shaping the STN-GPe beta band oscillations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007748

By:

Bahuguna, Jyotika;
Sahasranamam, Ajith;
Kumar, Arvind

Publication type:

Article

Mechanisms underlying attraction to odors in walking Drosophila.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007718

By:

Tao, Liangyu;
Ozarkar, Siddhi;
Bhandawat, Vikas

Publication type:

Article

Dynamical model of the CLC-2 ion channel reveals conformational changes associated with selectivity-filter gating.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007530

By:

McKiernan, Keri A.;
Koster, Anna K.;
Maduke, Merritt;
Pande, Vijay S.

Publication type:

Article

ProteinVR: Web-based molecular visualization in virtual reality.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007747

By:

Cassidy, Kevin C.;
Šefčík, Jan;
Raghav, Yogindra;
Chang, Alexander;
Durrant, Jacob D.

Publication type:

Article

Comparative study of population genomic approaches for mapping colony-level traits.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007653

By:

Inbar, Shani;
Cohen, Pnina;
Yahav, Tal;
Privman, Eyal

Publication type:

Article

Ten Simple Rules for organizing a non–real-time web conference.

Published in:

2020

By:

Arnal, Ana;
Epifanio, Irene;
Gregori, Pablo;
Martínez, Vicente

Publication type:

Editorial

Ten simple rules for providing effective bioinformatics research support.

Published in:

2020

By:

Kumuthini, Judit;
Chimenti, Michael;
Nahnsen, Sven;
Peltzer, Alexander;
Meraba, Rebone;
McFadyen, Ross;
Wells, Gordon;
Taylor, Deanne;
Maienschein-Cline, Mark;
Li, Jian-Liang;
Thimmapuram, Jyothi;
Murthy-Karuturi, Radha;
Zass, Lyndon

Publication type:

Editorial

Seven quick tips for analysis scripts in neuroimaging.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007358

By:

van Vliet, Marijn

Publication type:

Article

Computational design of substrate selective inhibition.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007713

By:

Da'adoosh, Benny;
Kaito, Kon;
Miyashita, Keishi;
Sakaguchi, Minoru;
Goldblum, Amiram

Publication type:

Article

Quantifying the roles of vomiting, diarrhea, and residents vs. staff in norovirus transmission in U.S. nursing home outbreaks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007271

By:

Adams, Carly;
Young, David;
Gastañaduy, Paul A.;
Paul, Prabasaj;
Marsh, Zach;
Hall, Aron J.;
Lopman, Benjamin A.

Publication type:

Article

An Evolutionary Trace method defines functionally important bases and sites common to RNA families.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007583

By:

Novikov, Ilya B.;
Wilkins, Angela D.;
Lichtarge, Olivier

Publication type:

Article

Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007707

By:

Routledge, Isobel;
Lai, Shengjie;
Battle, Katherine E.;
Ghani, Azra C.;
Gomez-Rodriguez, Manuel;
Gustafson, Kyle B.;
Mishra, Swapnil;
Unwin, Juliette;
Proctor, Joshua L.;
Tatem, Andrew J.;
Li, Zhongjie;
Bhatt, Samir

Publication type:

Article

Inference of coevolutionary dynamics and parameters from host and parasite polymorphism data of repeated experiments.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007668

By:

Märkle, Hanna;
Tellier, Aurélien

Publication type:

Article

An in-silico human cell model reveals the influence of spatial organization on RNA splicing.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007717

By:

Ghaemi, Zhaleh;
Peterson, Joseph R.;
Gruebele, Martin;
Luthey-Schulten, Zaida

Publication type:

Article

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007732

By:

Gautreau, Guillaume;
Bazin, Adelme;
Gachet, Mathieu;
Planel, Rémi;
Burlot, Laura;
Dubois, Mathieu;
Perrin, Amandine;
Médigue, Claudine;
Calteau, Alexandra;
Cruveiller, Stéphane;
Matias, Catherine;
Ambroise, Christophe;
Rocha, Eduardo P. C.;
Vallenet, David

Publication type:

Article

SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007737

By:

Kathuria, Kunal;
Ratan, Aakrosh

Publication type:

Article

Methods detecting rhythmic gene expression are biologically relevant only for strong signal.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007666

By:

Laloum, David;
Robinson-Rechavi, Marc

Publication type:

Article

Estimating epidemiological parameters from experiments in vector access to host plants, the method of matching gradients.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007724

By:

Donnelly, Ruairi;
Sikazwe, Geofrey W.;
Gilligan, Christopher A.

Publication type:

Article

Social behavioural adaptation in Autism.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007700

By:

Forgeot d'Arc, Baudouin;
Devaine, Marie;
Daunizeau, Jean

Publication type:

Article

Learning to represent signals spike by spike.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007692

By:

Brendel, Wieland;
Bourdoukan, Ralph;
Vertechi, Pietro;
Machens, Christian K.;
Denève, Sophie

Publication type:

Article

A simplified modelling framework facilitates more complex representations of plant circadian clocks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007671

By:

Foo, Mathias;
Bates, Declan G.;
Akman, Ozgur E.

Publication type:

Article

CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007665

By:

Terkelsen, Thilde;
Krogh, Anders;
Papaleo, Elena

Publication type:

Article

ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007654

By:

Bramer, Lisa M.;
White, Amanda M.;
Stratton, Kelly G.;
Thompson, Allison M.;
Claborne, Daniel;
Hofmockel, Kirsten;
McCue, Lee Ann

Publication type:

Article

Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007194

By:

Lei, Liu;
Escobedo, Ramón;
Sire, Clément;
Theraulaz, Guy

Publication type:

Article

The use of mixture density networks in the emulation of complex epidemiological individual-based models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006869

By:

Davis, Christopher N.;
Hollingsworth, T. Deirdre;
Caudron, Quentin;
Irvine, Michael A.

Publication type:

Article

Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007680

By:

Jaiteh, Mariama;
Rodríguez-Espigares, Ismael;
Selent, Jana;
Carlsson, Jens

Publication type:

Article

Modelling the epidemiology of residual Plasmodium vivax malaria in a heterogeneous host population: A case study in the Amazon Basin.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007377

By:

Corder, Rodrigo M.;
Ferreira, Marcelo U.;
Gomes, M. Gabriela M.

Publication type:

Article

Formation of phage lysis patterns and implications on co-propagation of phages and motile host bacteria.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007236

By:

Li, Xiaochu;
Gonzalez, Floricel;
Esteves, Nathaniel;
Scharf, Birgit E.;
Chen, Jing

Publication type:

Article

The influence of red blood cell deformability on hematocrit profiles and platelet margination.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007716

By:

Czaja, Benjamin;
Gutierrez, Mario;
Závodszky, Gábor;
de Kanter, David;
Hoekstra, Alfons;
Eniola-Adefeso, Omolola

Publication type:

Article

Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007714

By:

Shcherbinin, Dmitrii S.;
Belousov, Vlad A.;
Shugay, Mikhail

Publication type:

Article

Deconvolution of calcium imaging data using marked point processes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007650

By:

Shibue, Ryohei;
Komaki, Fumiyasu

Publication type:

Article

The impact of news exposure on collective attention in the United States during the 2016 Zika epidemic.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007633

By:

Tizzoni, Michele;
Panisson, André;
Paolotti, Daniela;
Cattuto, Ciro

Publication type:

Article

Estimation of neural network model parameters from local field potentials (LFPs).

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007725

By:

Skaar, Jan-Eirik W.;
Stasik, Alexander J.;
Hagen, Espen;
Ness, Torbjørn V.;
Einevoll, Gaute T.

Publication type:

Article

A plausible accelerating function of intermediate states in cancer metastasis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007682

By:

Goetz, Hanah;
Melendez-Alvarez, Juan R.;
Chen, Luonan;
Tian, Xiao-Jun

Publication type:

Article

Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007635

By:

Bravo, Rafael R.;
Baratchart, Etienne;
West, Jeffrey;
Schenck, Ryan O.;
Miller, Anna K.;
Gallaher, Jill;
Gatenbee, Chandler D.;
Basanta, David;
Robertson-Tessi, Mark;
Anderson, Alexander R. A.

Publication type:

Article

ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007741

By:

Mooradian, Arshag D.;
van der Post, Sjoerd;
Naegle, Kristen M.;
Held, Jason M.

Publication type:

Article

Modeling binary and graded cone cell fate patterning in the mouse retina.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007691

By:

Eldred, Kiara C.;
Avelis, Cameron;
Johnston, Robert J.;
Roberts, Elijah

Publication type:

Article

Detecting critical slowing down in high-dimensional epidemiological systems.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007679

By:

Brett, Tobias;
Ajelli, Marco;
Liu, Quan-Hui;
Krauland, Mary G.;
Grefenstette, John J.;
van Panhuis, Willem G.;
Vespignani, Alessandro;
Drake, John M.;
Rohani, Pejman

Publication type:

Article

Parallel Tempering with Lasso for model reduction in systems biology.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007669

By:

Gupta, Sanjana;
Lee, Robin E. C.;
Faeder, James R.

Publication type:

Article

The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007651

By:

Boemo, Michael A.;
Cardelli, Luca;
Nieduszynski, Conrad A.

Publication type:

Article

ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher level analysis of closely related bacterial isolates.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007134

By:

Schwengers, Oliver;
Hoek, Andreas;
Fritzenwanker, Moritz;
Falgenhauer, Linda;
Hain, Torsten;
Chakraborty, Trinad;
Goesmann, Alexander

Publication type:

Article

Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007676

By:

Morris, Tessa Altair;
Naik, Jasmine;
Fibben, Kirby Sinclair;
Kong, Xiangduo;
Kiyono, Tohru;
Yokomori, Kyoko;
Grosberg, Anna

Publication type:

Article

Fly-QMA: Automated analysis of mosaic imaginal discs in Drosophila.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007406

By:

Bernasek, Sebastian M.;
Peláez, Nicolás;
Carthew, Richard W.;
Bagheri, Neda;
Amaral, Luís A. N.

Publication type:

Article

Direct coupling analysis of epistasis in allosteric materials.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007630

By:

Bravi, Barbara;
Ravasio, Riccardo;
Brito, Carolina;
Wyart, Matthieu

Publication type:

Article

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007608

By:

Hyun, Jason C.;
Kavvas, Erol S.;
Monk, Jonathan M.;
Palsson, Bernhard O.

Publication type:

Article

Modular analysis of the control of flagellar Ca2+-spike trains produced by CatSper and CaV channels in sea urchin sperm.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007605

By:

Priego-Espinosa, Daniel A.;
Darszon, Alberto;
Guerrero, Adán;
González-Cota, Ana Laura;
Nishigaki, Takuya;
Martínez-Mekler, Gustavo;
Carneiro, Jorge

Publication type:

Article

Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007147

By:

Raimúndez, Elba;
Keller, Simone;
Ebert, Karolin;
Hug, Sabine;
Theis, Fabian J.;
Maier, Dieter;
Luber, Birgit;
Hasenauer, Jan

Publication type:

Article