Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 11

Results: 72

Phenotypes to remember: Evolutionary developmental memory capacity and robustness.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008425

By:

Szilágyi, András;
Szabó, Péter;
Santos, Mauro;
Szathmáry, Eörs

Publication type:

Article

Dopamine release, diffusion and uptake: A computational model for synaptic and volume transmission.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008410

By:

Wiencke, Kathleen;
Horstmann, Annette;
Mathar, David;
Villringer, Arno;
Neumann, Jane

Publication type:

Article

Ten simple rules for writing Dockerfiles for reproducible data science.

Published in:

2020

By:

Nüst, Daniel;
Sochat, Vanessa;
Marwick, Ben;
Eglen, Stephen J.;
Head, Tim;
Hirst, Tony;
Evans, Benjamin D.

Publication type:

Editorial

Neural mass modeling of slow-fast dynamics of seizure initiation and abortion.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008430

By:

Köksal Ersöz, Elif;
Modolo, Julien;
Bartolomei, Fabrice;
Wendling, Fabrice

Publication type:

Article

Cancer classification based on chromatin accessibility profiles with deep adversarial learning model.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008405

By:

Yang, Hai;
Wei, Qiang;
Li, Dongdong;
Wang, Zhe

Publication type:

Article

An exact method for quantifying the reliability of end-of-epidemic declarations in real time.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008478

By:

Parag, Kris V.;
Donnelly, Christl A.;
Jha, Rahul;
Thompson, Robin N.

Publication type:

Article

Inference of mutability landscapes of tumors from single cell sequencing data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008454

By:

Tsyvina, Viachaslau;
Zelikovsky, Alex;
Snir, Sagi;
Skums, Pavel

Publication type:

Article

Deconvolution of heterogeneous tumor samples using partial reference signals.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008452

By:

Qin, Yufang;
Zhang, Weiwei;
Sun, Xiaoqiang;
Nan, Siwei;
Wei, Nana;
Wu, Hua-Jun;
Zheng, Xiaoqi

Publication type:

Article

Modelling pathogen spread in a healthcare network: Indirect patient movements.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008442

By:

Piotrowska, Monika J.;
Sakowski, Konrad;
Karch, Andre;
Tahir, Hannan;
Horn, Johannes;
Kretzschmar, Mirjam E.;
Mikolajczyk, Rafael T.

Publication type:

Article

Inferring a network from dynamical signals at its nodes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008435

By:

Weistuch, Corey;
Agozzino, Luca;
Mujica-Parodi, Lilianne R.;
Dill, Ken A.

Publication type:

Article

Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008434

By:

Saha, Ananya;
Dixit, Narendra M.

Publication type:

Article

Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008433

By:

San Roman, Magdalena;
Wagner, Andreas

Publication type:

Article

Identifying longevity associated genes by integrating gene expression and curated annotations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008429

By:

Townes, F. William;
Carr, Kareem;
Miller, Jeffrey W.

Publication type:

Article

Maximizing the reusability of gene expression data by predicting missing metadata.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007450

By:

Lung, Pei-Yau;
Zhong, Dongrui;
Pang, Xiaodong;
Li, Yan;
Zhang, Jinfeng

Publication type:

Article

Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008422

By:

Tanaka, Azusa;
Ishitsuka, Yasuhiro;
Ohta, Hiroki;
Fujimoto, Akihiro;
Yasunaga, Jun-ichirou;
Matsuoka, Masao

Publication type:

Article

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008288

By:

Crook, Oliver M.;
Geladaki, Aikaterini;
Nightingale, Daniel J. H.;
Vennard, Owen;
Lilley, Kathryn S.;
Gatto, Laurent;
Kirk, Paul D. W.

Publication type:

Article

Precise determination of input-output mapping for multimodal gene circuits using data from transient transfection.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008389

By:

Stelzer, Christoph;
Benenson, Yaakov

Publication type:

Article

Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008386

By:

Dai, Kael;
Gratiy, Sergey L.;
Billeh, Yazan N.;
Xu, Richard;
Cai, Binghuang;
Cain, Nicholas;
Rimehaug, Atle E.;
Stasik, Alexander J.;
Einevoll, Gaute T.;
Mihalas, Stefan;
Koch, Christof;
Arkhipov, Anton

Publication type:

Article

Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008330

By:

Triplett, Marcus A.;
Pujic, Zac;
Sun, Biao;
Avitan, Lilach;
Goodhill, Geoffrey J.

Publication type:

Article

Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008291

By:

Li, Bian;
Yang, Yucheng T.;
Capra, John A.;
Gerstein, Mark B.

Publication type:

Article

Remote homology search with hidden Potts models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008085

By:

Wilburn, Grey W.;
Eddy, Sean R.

Publication type:

Article

Biological network growth in complex environments: A computational framework.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008003

By:

Paul, Torsten Johann;
Kollmannsberger, Philip

Publication type:

Article

The role of sensory uncertainty in simple contour integration.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006308

By:

Zhou, Yanli;
Acerbi, Luigi;
Ma, Wei Ji

Publication type:

Article

In silico prediction of ARB resistance: A first step in creating personalized ARB therapy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007719

By:

Anderson, Shane D.;
Tabassum, Asna;
Yeon, Jae Kyung;
Sharma, Garima;
Santos, Priscilla;
Soong, Tik Hang;
Thu, Yin Win;
Nies, Isaac;
Kurita, Tomomi;
Chandler, Andrew;
Alsamarah, Abdelaziz;
Kanassatega, Rhye-Samuel;
Luo, Yun L.;
Botello-Smith, Wesley M.;
Andresen, Bradley T.

Publication type:

Article

Transforming the study of organisms: Phenomic data models and knowledge bases.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008376

By:

Thessen, Anne E.;
Walls, Ramona L.;
Vogt, Lars;
Singer, Jessica;
Warren, Robert;
Buttigieg, Pier Luigi;
Balhoff, James P.;
Mungall, Christopher J.;
McGuinness, Deborah L.;
Stucky, Brian J.;
Yoder, Matthew J.;
Haendel, Melissa A.

Publication type:

Article

A dual-feedback loop model of the mammalian circadian clock for multi-input control of circadian phase.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008459

By:

Brown, Lindsey S.;
Doyle III, Francis J.

Publication type:

Article

Within-host mechanisms of immune regulation explain the contrasting dynamics of two helminth species in both single and dual infections.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008438

By:

Vanalli, Chiara;
Mari, Lorenzo;
Righetto, Lorenzo;
Casagrandi, Renato;
Gatto, Marino;
Cattadori, Isabella M.

Publication type:

Article

Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008397

By:

Sethi, Riccha;
Becker, Julia;
Graaf, Jos de;
Löwer, Martin;
Suchan, Martin;
Sahin, Ugur;
Weber, David

Publication type:

Article

Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008286

By:

Bowman, Howard;
Brooks, Joseph L.;
Hajilou, Omid;
Zoumpoulaki, Alexia;
Litvak, Vladimir

Publication type:

Article

EventEpi—A natural language processing framework for event-based surveillance.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008277

By:

Abbood, Auss;
Ullrich, Alexander;
Busche, Rüdiger;
Ghozzi, Stéphane

Publication type:

Article

Poisson balanced spiking networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008261

By:

Rullán Buxó, Camille E.;
Pillow, Jonathan W.

Publication type:

Article

Evolution of multicellular life cycles under costly fragmentation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008406

By:

Pichugin, Yuriy;
Traulsen, Arne

Publication type:

Article

Ten simple rules for starting research in your late teens.

Published in:

2020

By:

Mura, Cameron;
Chalupa, Mike;
Newbury, Abigail M.;
Chalupa, Jack;
Bourne, Philip E.

Publication type:

Editorial

Ten simple rules for increased lab resilience.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008313

By:

Rillig, Matthias C.;
Bielcik, Milos;
Chaudhary, V. Bala;
Grünfeld, Leonie;
Maaß, Stefanie;
Mansour, India;
Ryo, Masahiro;
Veresoglou, Stavros D.

Publication type:

Article

Modeling HIV-1 infection in the brain.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008305

By:

Barker, Colin T.;
Vaidya, Naveen K.

Publication type:

Article

DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008453

By:

Kulmanov, Maxat;
Hoehndorf, Robert

Publication type:

Article

BioAFMviewer: An interactive interface for simulated AFM scanning of biomolecular structures and dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008444

By:

Amyot, Romain;
Flechsig, Holger

Publication type:

Article

Systems biology informed deep learning for inferring parameters and hidden dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007575

By:

Yazdani, Alireza;
Lu, Lu;
Raissi, Maziar;
Karniadakis, George Em

Publication type:

Article

Speed of phototransduction in the microvillus regulates the accuracy and bandwidth of the rhabdomeric photoreceptor.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008427

By:

Frolov, Roman V.;
Ignatova, Irina I.

Publication type:

Article

Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008356

By:

Ma, Jingwei;
Do, Myan;
Le Gros, Mark. A.;
Peskin, Charles S.;
Larabell, Carolyn A.;
Mori, Yoichiro;
Isaacson, Samuel A.

Publication type:

Article

Validation of DBFOLD: An efficient algorithm for computing folding pathways of complex proteins.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008323

By:

Bitran, Amir;
Jacobs, William M.;
Shakhnovich, Eugene

Publication type:

Article

Ten simple rules for writing a paper about scientific software.

Published in:

2020

By:

Romano, Joseph D.;
Moore, Jason H.

Publication type:

Editorial

Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008354

By:

Xie, Chen;
Bekpen, Cemalettin;
Künzel, Sven;
Keshavarz, Maryam;
Krebs-Wheaton, Rebecca;
Skrabar, Neva;
Ullrich, Kristian K.;
Zhang, Wenyu;
Tautz, Diethard

Publication type:

Article

Twelve quick steps for genome assembly and annotation in the classroom.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008325

By:

Jung, Hyungtaek;
Ventura, Tomer;
Chung, J. Sook;
Kim, Woo-Jin;
Nam, Bo-Hye;
Kong, Hee Jeong;
Kim, Young-Ok;
Jeon, Min-Seung;
Eyun, Seong-il

Publication type:

Article

Deep learning predicts short non-coding RNA functions from only raw sequence data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008415

By:

Noviello, Teresa Maria Rosaria;
Ceccarelli, Francesco;
Ceccarelli, Michele;
Cerulo, Luigi

Publication type:

Article

Using B cell receptor lineage structures to predict affinity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008391

By:

Ralph, Duncan K.;
Matsen IV, Frederick A.

Publication type:

Article

Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008227

By:

Li, Ran;
Yu, Liangyong;
Zhou, Bo;
Zeng, Xiangrui;
Wang, Zhenyu;
Yang, Xiaoyan;
Zhang, Jing;
Gao, Xin;
Jiang, Rui;
Xu, Min

Publication type:

Article

Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008184

By:

Cakmakci, Doruk;
Karakaslar, Emin Onur;
Ruhland, Elisa;
Chenard, Marie-Pierre;
Proust, Francois;
Piotto, Martial;
Namer, Izzie Jacques;
Cicek, A. Ercument

Publication type:

Article

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008360

By:

Manninen, Tiina;
Saudargiene, Ausra;
Linne, Marja-Leena

Publication type:

Article

Arioc: High-concurrency short-read alignment on multiple GPUs.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008383

By:

Wilton, Richard;
Szalay, Alexander S.

Publication type:

Article