Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 9

Results: 55

Computational modelling predicts substantial carbon assimilation gains for C3 plants with a single-celled C4 biochemical pump.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007373

By:

Jurić, Ivan;
Hibberd, Julian M.;
Blatt, Mike;
Burroughs, Nigel J.

Publication type:

Article

Heterogeneous responses to low level death receptor activation are explained by random molecular assembly of the Caspase-8 activation platform.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007374

By:

Matveeva, Anna;
Fichtner, Michael;
McAllister, Katherine;
McCann, Christopher;
Sturrock, Marc;
Longley, Daniel B.;
Prehn, Jochen H. M.

Publication type:

Article

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006453

By:

Bendall, Matthew L.;
de Mulder, Miguel;
Iñiguez, Luis Pedro;
Lecanda-Sánchez, Aarón;
Pérez-Losada, Marcos;
Ostrowski, Mario A.;
Jones, R. Brad;
Mulder, Lubbertus C. F.;
Reyes-Terán, Gustavo;
Crandall, Keith A.;
Ormsby, Christopher E.;
Nixon, Douglas F.

Publication type:

Article

Time scales and wave formation in non-linear spatial public goods games.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007361

By:

Kimmel, Gregory J.;
Gerlee, Philip;
Altrock, Philipp M.

Publication type:

Article

On measuring selection in cancer from subclonal mutation frequencies.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007368

By:

Bozic, Ivana;
Paterson, Chay;
Waclaw, Bartlomiej

Publication type:

Article

Ten simple rules to create biological network figures for communication.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007244

By:

Marai, G. Elisabeta;
Pinaud, Bruno;
Bühler, Katja;
Lex, Alexander;
Morris, John H.

Publication type:

Article

LOTUS: A single- and multitask machine learning algorithm for the prediction of cancer driver genes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007381

By:

Collier, Olivier;
Stoven, Véronique;
Vert, Jean-Philippe

Publication type:

Article

Invariant neural responses for sensory categories revealed by the time-varying information for communication calls.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006698

By:

Elie, Julie E.;
Theunissen, Frédéric E.

Publication type:

Article

Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007375

By:

Rumbell, Timothy;
Kozloski, James

Publication type:

Article

Quantifying model evidence for yellow fever transmission routes in Africa.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007355

By:

Gaythorpe, Katy A. M.;
Jean, Kévin;
Cibrelus, Laurence;
Garske, Tini

Publication type:

Article

A scale-free analysis of the HIV-1 genome demonstrates multiple conserved regions of structural and functional importance.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007345

By:

Skittrall, Jordan P.;
Ingemarsdotter, Carin K.;
Gog, Julia R.;
Lever, Andrew M. L.

Publication type:

Article

Correction: Comprehensively benchmarking applications for detecting copy number variation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007367

By:

Zhang, Le;
Bai, Wanyu;
Yuan, Na;
Du, Zhenglin

Publication type:

Article

A flexible and generalizable model of online latent-state learning.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007331

By:

Cochran, Amy L.;
Cisler, Josh M.

Publication type:

Article

Why do G-quadruplexes dimerize through the 5’-ends? Driving forces for G4 DNA dimerization examined in atomic detail.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007383

By:

Kogut, Mateusz;
Kleist, Cyprian;
Czub, Jacek

Publication type:

Article

Multi-Cell ECM compaction is predictable via superposition of nonlinear cell dynamics linearized in augmented state space.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006798

By:

Mayalu, Michaëlle N.;
Kim, Min-Cheol;
Asada, H. Harry

Publication type:

Article

Unified feature association networks through integration of transcriptomic and proteomic data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007241

By:

McClure, Ryan S.;
Wendler, Jason P.;
Adkins, Joshua N.;
Swanstrom, Jesica;
Baric, Ralph;
Kaiser, Brooke L. Deatherage;
Oxford, Kristie L.;
Waters, Katrina M.;
McDermott, Jason E.

Publication type:

Article

Deep learning as a tool for neural data analysis: Speech classification and cross-frequency coupling in human sensorimotor cortex.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007091

By:

Livezey, Jesse A.;
Bouchard, Kristofer E.;
Chang, Edward F.

Publication type:

Article

Predicting gene regulatory interactions based on spatial gene expression data and deep learning.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007324

By:

Yang, Yang;
Fang, Qingwei;
Shen, Hong-Bin

Publication type:

Article

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006789

By:

Dincer, Cansu;
Kaya, Tugba;
Keskin, Ozlem;
Gursoy, Attila;
Tuncbag, Nurcan

Publication type:

Article

Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007111

By:

Venkatramanan, Srinivasan;
Chen, Jiangzhuo;
Fadikar, Arindam;
Gupta, Sandeep;
Higdon, Dave;
Lewis, Bryan;
Marathe, Madhav;
Mortveit, Henning;
Vullikanti, Anil

Publication type:

Article

Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007353

By:

Chagoyen, Mónica;
Poyatos, Juan F.

Publication type:

Article

Fast and near-optimal monitoring for healthcare acquired infection outbreaks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007284

By:

Adhikari, Bijaya;
Lewis, Bryan;
Vullikanti, Anil;
Jiménez, José Mauricio;
Prakash, B. Aditya

Publication type:

Article

Frequency spectrum of chemical fluctuation: A probe of reaction mechanism and dynamics.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007356

By:

Song, Sanggeun;
Yang, Gil-Suk;
Park, Seong Jun;
Hong, Sungguan;
Kim, Ji-Hyun;
Sung, Jaeyoung

Publication type:

Article

From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007319

By:

Foster, Charles J.;
Gopalakrishnan, Saratram;
Antoniewicz, Maciek R.;
Maranas, Costas D.

Publication type:

Article

MHC binding affects the dynamics of different T-cell receptors in different ways.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007338

By:

Knapp, Bernhard;
van der Merwe, P. Anton;
Dushek, Omer;
Deane, Charlotte M.

Publication type:

Article

Designing combination therapies with modeling chaperoned machine learning.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007158

By:

Zhang, Yin;
Huynh, Julie M.;
Liu, Guan-Sheng;
Ballweg, Richard;
Aryeh, Kayenat S.;
Paek, Andrew L.;
Zhang, Tongli

Publication type:

Article

Prepaid parameter estimation without likelihoods.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007181

By:

Mestdagh, Merijn;
Verdonck, Stijn;
Meers, Kristof;
Loossens, Tim;
Tuerlinckx, Francis

Publication type:

Article

3D computational models explain muscle activation patterns and energetic functions of internal structures in fish swimming.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006883

By:

Ming, Tingyu;
Jin, Bowen;
Song, Jialei;
Luo, Haoxiang;
Du, Ruxu;
Ding, Yang

Publication type:

Article

Close spatial arrangement of mutants favors and disfavors fixation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007212

By:

Xiao, Yunming;
Wu, Bin

Publication type:

Article

Deep attention networks reveal the rules of collective motion in zebrafish.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007354

By:

Heras, Francisco J. H.;
Romero-Ferrero, Francisco;
Hinz, Robert C.;
de Polavieja, Gonzalo G.

Publication type:

Article

EMULSION: Transparent and flexible multiscale stochastic models in human, animal and plant epidemiology.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007342

By:

Picault, Sébastien;
Huang, Yu-Lin;
Sicard, Vianney;
Arnoux, Sandie;
Beaunée, Gaël;
Ezanno, Pauline

Publication type:

Article

Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007305

By:

Becker, Alexander D.;
Wesolowski, Amy;
Bjørnstad, Ottar N.;
Grenfell, Bryan T.

Publication type:

Article

Perspective: Dimensions of the scientific method.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007279

By:

Voit, Eberhard O.

Publication type:

Article

Correction: Minimal model of interictal and ictal discharges “Epileptor-2”.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007359

By:

Chizhov, Anton V.;
Zefirov, Artyom V.;
Amakhin, Dmitry V.;
Smirnova, Elena Yu.;
Zaitsev, Aleksey V.

Publication type:

Article

Loop analysis of blood pressure/volume homeostasis.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007346

By:

Burlando, Bruno;
Blanchini, Franco;
Giordano, Giulia

Publication type:

Article

Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007330

By:

Schmal, Christoph;
Ono, Daisuke;
Myung, Jihwan;
Pett, J. Patrick;
Honma, Sato;
Honma, Ken-Ichi;
Herzel, Hanspeter;
Tokuda, Isao T.

Publication type:

Article

Ten simple rules for helping newcomers become contributors to open projects.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007296

By:

Sholler, Dan;
Steinmacher, Igor;
Ford, Denae;
Averick, Mara;
Hoye, Mike;
Wilson, Greg

Publication type:

Article

Bioinformatics in Jordan: Status, challenges, and future directions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007202

By:

Bani Baker, Qanita;
Nuser, Maryam S.

Publication type:

Article

Characterizing and dissociating multiple time-varying modulatory computations influencing neuronal activity.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007275

By:

Niknam, Kaiser;
Akbarian, Amir;
Clark, Kelsey;
Zamani, Yasin;
Noudoost, Behrad;
Nategh, Neda

Publication type:

Article

Generation of Binary Tree-Child phylogenetic networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007347

By:

Cardona, Gabriel;
Pons, Joan Carles;
Scornavacca, Celine

Publication type:

Article

Role of dynamic nuclear deformation on genomic architecture reorganization.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007289

By:

Seirin-Lee, Sungrim;
Osakada, Fumitaka;
Takeda, Junichi;
Tashiro, Satoshi;
Kobayashi, Ryo;
Yamamoto, Takashi;
Ochiai, Hiroshi

Publication type:

Article

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007329

By:

Read, David F.;
Cook, Kate;
Lu, Yang Y.;
Le Roch, Karine G.;
Noble, William Stafford

Publication type:

Article

Network trade-offs and homeostasis in Arabidopsis shoot architectures.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007325

By:

Conn, Adam;
Chandrasekhar, Arjun;
Rongen, Martin van;
Leyser, Ottoline;
Chory, Joanne;
Navlakha, Saket

Publication type:

Article

Systematically understanding the immunity leading to CRPC progression.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007344

By:

Ji, Zhiwei;
Zhao, Weiling;
Lin, Hui-Kuan;
Zhou, Xiaobo

Publication type:

Article

Learning the structure of the world: The adaptive nature of state-space and action representations in multi-stage decision-making.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007334

By:

Dezfouli, Amir;
Balleine, Bernard W.

Publication type:

Article

p13CMFA: Parsimonious 13C metabolic flux analysis.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007310

By:

Foguet, Carles;
Jayaraman, Anusha;
Marin, Silvia;
Selivanov, Vitaly A.;
Moreno, Pablo;
Messeguer, Ramon;
de Atauri, Pedro;
Cascante, Marta

Publication type:

Article

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007349

By:

Hicks, Allison L.;
Wheeler, Nicole;
Sánchez-Busó, Leonor;
Rakeman, Jennifer L.;
Harris, Simon R.;
Grad, Yonatan H.

Publication type:

Article

Cost-benefit trade-offs in decision-making and learning.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007326

By:

Sidarus, Nura;
Palminteri, Stefano;
Chambon, Valérian

Publication type:

Article

Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007283

By:

Su, Yufeng;
Luo, Yunan;
Zhao, Xiaoming;
Liu, Yang;
Peng, Jian

Publication type:

Article

The FACTS model of speech motor control: Fusing state estimation and task-based control.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007321

By:

Parrell, Benjamin;
Ramanarayanan, Vikram;
Nagarajan, Srikantan;
Houde, John

Publication type:

Article