Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 7

Results: 57

A computational framework for the morpho-elastic development of molluskan shells by surface and volume growth.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007213

By:

Rudraraju, Shiva;
Moulton, Derek E.;
Chirat, Régis;
Goriely, Alain;
Garikipati, Krishna

Publication type:

Article

Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006927

By:

Wessel, Jan R.;
Huber, David E.

Publication type:

Article

Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007243

By:

Chkhaidze, Ketevan;
Heide, Timon;
Werner, Benjamin;
Williams, Marc J.;
Huang, Weini;
Caravagna, Giulio;
Graham, Trevor A.;
Sottoriva, Andrea

Publication type:

Article

Depressive symptoms are associated with blunted reward learning in social contexts.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007224

By:

Safra, Lou;
Chevallier, Coralie;
Palminteri, Stefano

Publication type:

Article

Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006851

By:

Ivanov, Sergey;
Lagunin, Alexey;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

Identifying important parameters in the inflammatory process with a mathematical model of immune cell influx and macrophage polarization.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007172

By:

Torres, Marcella;
Jing Wang;
Yannie, Paul J.;
Ghosh, Shobha;
Segal, Rebecca A.;
Reynolds, Angela M.

Publication type:

Article

Robustness of respiratory rhythm generation across dynamic regimes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006860

By:

Rubin, Jonathan E.;
Smith, Jeffrey C.

Publication type:

Article

A model for the origin and development of visual orientation selectivity.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007254

By:

Nguyen, Gratia;
Freeman, Alan W.

Publication type:

Article

Heterogeneous susceptibility to rotavirus infection and gastroenteritis in two birth cohort studies: Parameter estimation and epidemiological implications.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007014

By:

Lewnard, Joseph A.;
Lopman, Benjamin A.;
Parashar, Umesh D.;
Bennett, Aisleen;
Bar-Zeev, Naor;
Cunliffe, Nigel A.;
Samuel, Prasanna;
Guerrero, M. Lourdes;
Ruiz-Palacios, Guillermo;
Kang, Gagandeep;
Pitzer, Virginia E.

Publication type:

Article

The impact of DNA methylation on the cancer proteome.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007245

By:

Magzoub, Majed Mohamed;
Prunello, Marcos;
Brennan, Kevin;
Gevaert, Olivier

Publication type:

Article

Predictions of time to HIV viral rebound following ART suspension that incorporate personal biomarkers.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007229

By:

Conway, Jessica M.;
Perelson, Alan S.;
Li, Jonathan Z.

Publication type:

Article

Ten simple rules for giving an effective academic job talk.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007163

By:

Sura, Shayna A.;
Smith, Lauren L.;
Ambrose, Monique R.;
Amorim, C. Eduardo Guerra;
Beichman, Annabel C.;
Gomez, Ana C. R.;
Juhn, Mark;
Kandlikar, Gaurav S.;
Miller, Julie S.;
Mooney, Jazlyn;
Mummah, Riley O.;
Lohmueller, Kirk E.;
Lloyd-Smith, James O.

Publication type:

Article

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007007

By:

Rule, Adam;
Birmingham, Amanda;
Zuniga, Cristal;
Altintas, Ilkay;
Huang, Shih-Cheng;
Knight, Rob;
Moshiri, Niema;
Nguyen, Mai H.;
Rosenthal, Sara Brin;
Pérez, Fernando;
Rose, Peter W.

Publication type:

Article

Foraging as an evidence accumulation process.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007060

By:

Davidson, Jacob D.;
El Hady, Ahmed

Publication type:

Article

Syntrophy emerges spontaneously in complex metabolic systems.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007169

By:

Libby, Eric;
Hébert-Dufresne, Laurent;
Hosseini, Sayed-Rzgar;
Wagner, Andreas

Publication type:

Article

Mathematical model predicts anti-adhesion–antibiotic–debridement combination therapies can clear an antibiotic resistant infection.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007211

By:

Roberts, Paul A.;
Huebinger, Ryan M.;
Keen, Emma;
Krachler, Anne-Marie;
Jabbari, Sara

Publication type:

Article

Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007208

By:

Seiler, Enrico;
Trappe, Kathrin;
Renard, Bernhard Y.

Publication type:

Article

A case study in the functional consequences of scaling the sizes of realistic cortical models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007198

By:

Joglekar, Madhura R.;
Chariker, Logan;
Shapley, Robert;
Young, Lai-Sang

Publication type:

Article

Ensemble of decision tree reveals potential miRNA-disease associations.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007209

By:

Chen, Xing;
Zhu, Chi-Chi;
Yin, Jun

Publication type:

Article

Biophysics and population size constrains speciation in an evolutionary model of developmental system drift.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007177

By:

Khatri, Bhavin S.;
Goldstein, Richard A.

Publication type:

Article

Modeling human intuitions about liquid flow with particle-based simulation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007210

By:

Bates, Christopher J.;
Yildirim, Ilker;
Tenenbaum, Joshua B.;
Battaglia, Peter

Publication type:

Article

Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007133

By:

Ralph, Duncan K.;
IVMatsen, Frederick A.

Publication type:

Article

Molecular noise of innate immunity shapes bacteria-phage ecologies.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007168

By:

Ruess, Jakob;
Pleška, Maroš;
Guet, Cǎlin C.;
Tkačik, Gašper

Publication type:

Article

DART-ID increases single-cell proteome coverage.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007082

By:

Chen, Albert Tian;
Franks, Alexander;
Slavov, Nikolai

Publication type:

Article

Aberrant DNA methylation defines isoform usage in cancer, with functional implications.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007095

By:

Chen, Yun-Ching;
Elnitski, Laura

Publication type:

Article

Why do eukaryotic proteins contain more intrinsically disordered regions?

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007186

By:

Basile, Walter;
Salvatore, Marco;
Bassot, Claudio;
Elofsson, Arne

Publication type:

Article

Assessing key decisions for transcriptomic data integration in biochemical networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007185

By:

Richelle, Anne;
Joshi, Chintan;
Lewis, Nathan E.

Publication type:

Article

β-Methylamino-L-alanine substitution of serine in SOD1 suggests a direct role in ALS etiology.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007225

By:

Proctor, Elizabeth A.;
Mowrey, David D.;
Dokholyan, Nikolay V.

Publication type:

Article

Propagation of orientation selectivity in a spiking network model of layered primary visual cortex.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007080

By:

Merkt, Benjamin;
Schüßler, Friedrich;
Rotter, Stefan

Publication type:

Article

Primacy coding facilitates effective odor discrimination when receptor sensitivities are tuned.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007188

By:

Zwicker, David

Publication type:

Article

Recombinant vector vaccine evolution.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006857

By:

Bull, James J.;
Nuismer, Scott L.;
Antia, Rustom

Publication type:

Article

From skylight input to behavioural output: A computational model of the insect polarised light compass.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007123

By:

Gkanias, Evripidis;
Risse, Benjamin;
Mangan, Michael;
Webb, Barbara

Publication type:

Article

Morphophenotypic classification of tumor organoids as an indicator of drug exposure and penetration potential.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007214

By:

Karolak, Aleksandra;
Poonja, Sharan;
Rejniak, Katarzyna A.

Publication type:

Article

Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007075

By:

Breitenbach, Tim;
Liang, Chunguang;
Beyersdorf, Niklas;
Dandekar, Thomas

Publication type:

Article

Computational design of improved standardized chemotherapy protocols for grade II oligodendrogliomas.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006778

By:

Pérez-García, Víctor M.;
Ayala-Hernández, Luis E.;
Belmonte-Beitia, Juan;
Schucht, Philippe;
Murek, Michael;
Raabe, Andreas;
Sepúlveda, Juan

Publication type:

Article

Large vessels as a tree of transmission lines incorporated in the CircAdapt whole-heart model: A computational tool to examine heart-vessel interaction.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007173

By:

Heusinkveld, Maarten H. G.;
Huberts, Wouter;
Lumens, Joost;
Arts, Theo;
Delhaas, Tammo;
Reesink, Koen D.

Publication type:

Article

Reservoir computing model of prefrontal cortex creates novel combinations of previous navigation sequences from hippocampal place-cell replay with spatial reward propagation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006624

By:

Cazin, Nicolas;
Llofriu Alonso, Martin;
Scleidorovich Chiodi, Pablo;
Pelc, Tatiana;
Harland, Bruce;
Weitzenfeld, Alfredo;
Fellous, Jean-Marc;
Dominey, Peter Ford

Publication type:

Article

Information-theoretic analysis of multivariate single-cell signaling responses.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007132

By:

Jetka, Tomasz;
Nienałtowski, Karol;
Winarski, Tomasz;
Błoński, Sławomir;
Komorowski, Michał

Publication type:

Article

Dimensionality in recurrent spiking networks: Global trends in activity and local origins in connectivity.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006446

By:

Recanatesi, Stefano;
Ocker, Gabriel Koch;
Buice, Michael A.;
Shea-Brown, Eric

Publication type:

Article

Think: Theory for Africa.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007049

By:

Currin, Christopher B.;
Khoza, Phumlani N.;
Antrobus, Alexander D.;
Latham, Peter E.;
Vogels, Tim P.;
Raimondo, Joseph V.

Publication type:

Article

Machine and deep learning meet genome-scale metabolic modeling.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007084

By:

Zampieri, Guido;
Vijayakumar, Supreeta;
Yaneske, Elisabeth;
Angione, Claudio

Publication type:

Article

Sensorimotor maps can be dynamically calibrated using an adaptive-filter model of the cerebellum.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007187

By:

Wilson, Emma D.;
Anderson, Sean R.;
Dean, Paul;
Porrill, John

Publication type:

Article

PrediTALE: A novel model learned from quantitative data allows for new perspectives on TALE targeting.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007206

By:

Erkes, Annett;
Mücke, Stefanie;
Reschke, Maik;
Boch, Jens;
Grau, Jan

Publication type:

Article

Identifying determinants of persistent MRSA bacteremia using mathematical modeling.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007087

By:

Mikkaichi, Tsuyoshi;
Yeaman, Michael R.;
Hoffmann, Alexander;
null, null

Publication type:

Article

Modeling the daily rhythm of human pain processing in the dorsal horn.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007106

By:

Crodelle, Jennifer;
Piltz, Sofia H.;
Hagenauer, Megan Hastings;
Booth, Victoria

Publication type:

Article

ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007081

By:

Chan, Chun;
Pang, Xiaoyun;
Zhang, Yan;
Niu, Tongxin;
Yang, Shengjiang;
Zhao, Daohui;
Li, Jian;
Lu, Lanyuan;
Hsu, Victor W.;
Zhou, Jian;
Sun, Fei;
Fan, Jun

Publication type:

Article

Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007156

By:

Chandrasekaran, Aravind;
Upadhyaya, Arpita;
Papoian, Garegin A.

Publication type:

Article

Human online adaptation to changes in prior probability.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006681

By:

Norton, Elyse H.;
Acerbi, Luigi;
Ma, Wei Ji;
Landy, Michael S.

Publication type:

Article

Modelling the mechanics of exploration in larval Drosophila.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1006635

By:

Loveless, Jane;
Lagogiannis, Konstantinos;
Webb, Barbara

Publication type:

Article

Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007088

By:

Cai, Chunhui;
Cooper, Gregory F.;
Lu, Kevin N.;
Ma, Xiaojun;
Xu, Shuping;
Zhao, Zhenlong;
Chen, Xueer;
Xue, Yifan;
Lee, Adrian V.;
Clark, Nathan;
Chen, Vicky;
Lu, Songjian;
Chen, Lujia;
Yu, Liyue;
Hochheiser, Harry S.;
Jiang, Xia;
Wang, Q. Jane;
Lu, Xinghua

Publication type:

Article