Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 6

Results: 67

Neural correlates of sparse coding and dimensionality reduction.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006908

By:

Beyeler, Michael;
Rounds, Emily L.;
Carlson, Kristofor D.;
Dutt, Nikil;
Krichmar, Jeffrey L.

Publication type:

Article

Drosophila melanogaster grooming possesses syntax with distinct rules at different temporal scales.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007105

By:

Mueller, Joshua M.;
Ravbar, Primoz;
Simpson, Julie H.;
Carlson, Jean M.

Publication type:

Article

Optimization of surgical intervention outside the epileptogenic zone in the Virtual Epileptic Patient (VEP).

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007051

By:

An, Sora;
Bartolomei, Fabrice;
Guye, Maxime;
Jirsa, Viktor

Publication type:

Article

Modeling the temporal dynamics of the gut microbial community in adults and infants.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006960

By:

Shenhav, Liat;
Furman, Ori;
Briscoe, Leah;
Thompson, Mike;
Silverman, Justin D.;
Mizrahi, Itzhak;
Halperin, Eran

Publication type:

Article

Energetic costs of cellular and therapeutic control of stochastic mitochondrial DNA populations.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007023

By:

Hoitzing, Hanne;
Gammage, Payam A.;
Haute, Lindsey van;
Minczuk, Michal;
Johnston, Iain G.;
Jones, Nick S.

Publication type:

Article

Model-inferred mechanisms of liver function from magnetic resonance imaging data: Validation and variation across a clinically relevant cohort.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007157

By:

Forsgren, Mikael F.;
Karlsson, Markus;
Dahlqvist Leinhard, Olof;
Dahlström, Nils;
Norén, Bengt;
Romu, Thobias;
Ignatova, Simone;
Ekstedt, Mattias;
Kechagias, Stergios;
Lundberg, Peter;
Cedersund, Gunnar

Publication type:

Article

A new framework for assessing subject-specific whole brain circulation and perfusion using MRI-based measurements and a multi-scale continuous flow model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007073

By:

Hodneland, Erlend;
Hanson, Erik;
Sævareid, Ove;
Nævdal, Geir;
Lundervold, Arvid;
Šoltészová, Veronika;
Munthe-Kaas, Antonella Z.;
Deistung, Andreas;
Reichenbach, Jürgen R.;
Nordbotten, Jan M.

Publication type:

Article

Problem-based learning in clinical bioinformatics education: Does it help to create communities of practice?

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006746

By:

Davies, Angela C.;
Harris, Diane;
Banks-Gatenby, Amanda;
Brass, Andy

Publication type:

Article

Augmenting subnetwork inference with information extracted from the scientific literature.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006758

By:

Kiblawi, Sid;
Chasman, Deborah;
Henning, Amanda;
Park, Eunju;
Poon, Hoifung;
Gould, Michael;
Ahlquist, Paul;
Craven, Mark

Publication type:

Article

From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006923

By:

McGrath, Annette;
Champ, Katherine;
Shang, Catherine A.;
van Dam, Ellen;
Brooksbank, Cath;
Morgan, Sarah L.

Publication type:

Article

Evidence accumulation is biased by motivation: A computational account.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007089

By:

Gesiarz, Filip;
Cahill, Donal;
Sharot, Tali

Publication type:

Article

EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007059

By:

Koodli, Rohan V.;
Keep, Benjamin;
Coppess, Katherine R.;
Portela, Fernando;
null, null;
Das, Rhiju

Publication type:

Article

Telling ecological networks apart by their structure: A computational challenge.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007076

By:

Michalska-Smith, Matthew J.;
Allesina, Stefano

Publication type:

Article

Predicting gastrointestinal drug effects using contextualized metabolic models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007100

By:

Ben Guebila, Marouen;
Thiele, Ines

Publication type:

Article

Open collaborative writing with Manubot.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007128

By:

Himmelstein, Daniel S.;
Rubinetti, Vincent;
Slochower, David R.;
Hu, Dongbo;
Malladi, Venkat S.;
Greene, Casey S.;
Gitter, Anthony

Publication type:

Article

Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007083

By:

Hauser, Anthony;
Kusejko, Katharina;
Johnson, Leigh F.;
Wandeler, Gilles;
Riou, Julien;
Goldstein, Fardo;
Egger, Matthias;
Kouyos, Roger D.

Publication type:

Article

A neural network model predicts community-level signaling states in a diverse microbial community.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007166

By:

Silva, Kalinga Pavan T.;
Boedicker, James Q.

Publication type:

Article

Learning to use past evidence in a sophisticated world model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007093

By:

Ahilan, Sanjeevan;
Solomon, Rebecca B.;
Breton, Yannick-André;
Conover, Kent;
Niyogi, Ritwik K.;
Shizgal, Peter;
Dayan, Peter

Publication type:

Article

Ten simple rules for successfully hosting an intern at a scientific software company.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007020

By:

Briedis, Kristine;
Chen, Yi-Shiou;
Markel, Scott

Publication type:

Article

Modelling the transport of fluid through heterogeneous, whole tumours in silico.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006751

By:

Sweeney, Paul W.;
d’Esposito, Angela;
Walker-Samuel, Simon;
Shipley, Rebecca J.

Publication type:

Article

Resurgent Na<sup>+</sup> Current Offers Noise Modulation in Bursting Neurons.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007154

By:

Venugopal, Sharmila;
Seki, Soju;
Terman, David H.;
Pantazis, Antonios;
Olcese, Riccardo;
Wiedau-Pazos, Martina;
Chandler, Scott H.

Publication type:

Article

Protein ensembles link genotype to phenotype.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006648

By:

Nussinov, Ruth;
Tsai, Chung-Jung;
Jang, Hyunbum

Publication type:

Article

Ten quick tips for effective dimensionality reduction.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006907

By:

Nguyen, Lan Huong;
Holmes, Susan

Publication type:

Article

Correction: From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007155

By:

Zenker, Sven;
Rubin, Jonathan;
Clermont, Gilles

Publication type:

Article

Coupling water fluxes with cell wall mechanics in a multicellular model of plant development.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007121

By:

Cheddadi, Ibrahim;
Génard, Michel;
Bertin, Nadia;
Godin, Christophe

Publication type:

Article

Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH).

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007127

By:

Borer, Benedict;
Ataman, Meriç;
Hatzimanikatis, Vassily;
Or, Dani

Publication type:

Article

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007113

By:

Bomkamp, Claire;
Tripathy, Shreejoy J.;
Bengtsson Gonzales, Carolina;
Hjerling-Leffler, Jens;
Craig, Ann Marie;
Pavlidis, Paul

Publication type:

Article

Correction: Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action.

Published in:: PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007141
Publication type:: Article

Charting pathways to climate change mitigation in a coupled socio-climate model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007000

By:

Bury, Thomas M.;
Bauch, Chris T.;
Anand, Madhur

Publication type:

Article

Mathematical model studies of the comprehensive generation of major and minor phyllotactic patterns in plants with a predominant focus on orixate phyllotaxis.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007044

By:

Yonekura, Takaaki;
Iwamoto, Akitoshi;
Fujita, Hironori;
Sugiyama, Munetaka

Publication type:

Article

Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007043

By:

Piray, Payam;
Dezfouli, Amir;
Heskes, Tom;
Frank, Michael J.;
Daw, Nathaniel D.

Publication type:

Article

Rational discovery of dual-indication multi-target PDE/Kinase inhibitor for precision anti-cancer therapy using structural systems pharmacology.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006619

By:

Lim, Hansaim;
He, Di;
Qiu, Yue;
Krawczuk, Patrycja;
Sun, Xiaoru;
Xie, Lei

Publication type:

Article

Correction: Recentrifuge: Robust comparative analysis and contamination removal for metagenomics.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007131

By:

Martí, Jose Manuel

Publication type:

Article

Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007112

By:

Pagel, Kymberleigh A.;
Antaki, Danny;
Lian, AoJie;
Mort, Matthew;
Cooper, David N.;
Sebat, Jonathan;
Iakoucheva, Lilia M.;
Mooney, Sean D.;
Radivojac, Predrag

Publication type:

Article

A multi-scale model of gas transport in the lung to study heterogeneous lung ventilation during the multiple-breath washout test.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007079

By:

Hasler, David;
Anagnostopoulou, Pinelopi;
Nyilas, Sylvia;
Latzin, Philipp;
Schittny, Johannes;
Obrist, Dominik

Publication type:

Article

Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007136

By:

Seyler, Sean L.;
Kumar, Avishek;
Thorpe, M. F.;
Beckstein, Oliver

Publication type:

Article

Correction: Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection.

Published in:: PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007138
Publication type:: Article

Correction: Geospatial characteristics of measles transmission in China during 2005−2014.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007144

By:

Yang, Wan;
Wen, Liang;
Li, Shen-Long;
Chen, Kai;
Zhang, Wen-Yi;
Shaman, Jeffrey

Publication type:

Article

Correction: The Equivalence of Information-Theoretic and Likelihood-Based Methods for Neural Dimensionality Reduction.

Published in:: PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007139
Publication type:: Article

Correction: Ten Simple Rules for Taking Advantage of Git and GitHub.

Published in:: PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007142
Publication type:: Article

DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007129

By:

Lee, Ingoo;
Keum, Jongsoo;
Nam, Hojung

Publication type:

Article

Correction: Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics.

Published in:: PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007143
Publication type:: Article

A neural field model for color perception unifying assimilation and contrast.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007050

By:

Song, Anna;
Faugeras, Olivier;
Veltz, Romain

Publication type:

Article

Correction: Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable.

Published in:: PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007137
Publication type:: Article

Integrative modeling of the HIV-1 ribonucleoprotein complex.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007150

By:

Goodsell, David S.;
Jewett, Andrew;
Olson, Arthur J.;
Forli, Stefano

Publication type:

Article

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007026

By:

Zhan, Yingqian Ada;
Wray, Charles Gregory;
Namburi, Sandeep;
Glantz, Spencer T.;
Laubenbacher, Reinhard;
Chuang, Jeffrey H.

Publication type:

Article

Correction: Atrial arrhythmogenicity of KCNJ2 mutations in short QT syndrome: Insights from virtual human atria.

Published in:: 2019
Publication type:: Correction Notice

Disentangling juxtacrine from paracrine signalling in dynamic tissue.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007030

By:

Momiji, Hiroshi;
Hassall, Kirsty L.;
Featherstone, Karen;
McNamara, Anne V.;
Patist, Amanda L.;
Spiller, David G.;
Christian, Helen C.;
White, Michael R. H.;
Davis, Julian R. E.;
Finkenstädt, Bärbel F.;
Rand, David A.

Publication type:

Article

Dynamic properties of internal noise probed by modulating binocular rivalry.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007071

By:

Baker, Daniel H.;
Richard, Bruno

Publication type:

Article

The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007056

By:

Bai, Hongjun;
Li, Yifan;
Michael, Nelson L.;
Robb, Merlin L.;
Rolland, Morgane

Publication type:

Article