Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 5

Results: 74

Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007109

By:

Boza, Gergely;
Worsley, Sarah F.;
Yu, Douglas W.;
Scheuring, István

Publication type:

Article

Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006796

By:

Pandini, Alessandro;
Schulman, Howard;
Khan, Shahid

Publication type:

Article

State-aware detection of sensory stimuli in the cortex of the awake mouse.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006716

By:

Sederberg, Audrey J.;
Pala, Aurélie;
Zheng, He J. V.;
He, Biyu J.;
Stanley, Garrett B.

Publication type:

Article

Properties of cardiac conduction in a cell-based computational model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007042

By:

Jæger, Karoline Horgmo;
Edwards, Andrew G.;
McCulloch, Andrew;
Tveito, Aslak

Publication type:

Article

Perturbing low dimensional activity manifolds in spiking neuronal networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007074

By:

Wärnberg, Emil;
Kumar, Arvind

Publication type:

Article

Comment on "A comprehensive overview and evaluation of circular RNA detection tools".

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006158

By:

Chen, Chia-Ying;
Chuang, Trees-Juen

Publication type:

Article

Parameter estimation and identifiability in a neural population model for electro-cortical activity.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006694

By:

Hartoyo, Agus;
Cadusch, Peter J.;
Liley, David T. J.;
Hicks, Damien G.

Publication type:

Article

Simulation of single-protein nanopore sensing shows feasibility for whole-proteome identification.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007067

By:

Ohayon, Shilo;
Girsault, Arik;
Nasser, Maisa;
Shen-Orr, Shai;
Meller, Amit

Publication type:

Article

Differential sustained and transient temporal processing across visual streams.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007011

By:

Stigliani, Anthony;
Jeska, Brianna;
Grill-Spector, Kalanit

Publication type:

Article

Close proximity interactions support transmission of ESBL-K. pneumoniae but not ESBL-E. coli in healthcare settings.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006496

By:

Duval, Audrey;
Obadia, Thomas;
Boëlle, Pierre-Yves;
Fleury, Eric;
Herrmann, Jean-Louis;
Guillemot, Didier;
Temime, Laura;
Opatowski, Lulla;
null, null

Publication type:

Article

Modeling enamel matrix secretion in mammalian teeth.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007058

By:

Häkkinen, Teemu J.;
Sova, S. Susanna;
Corfe, Ian J.;
Tjäderhane, Leo;
Hannukainen, Antti;
Jernvall, Jukka

Publication type:

Article

Correction: Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models.

Published in:: 2019
Publication type:: Correction Notice

Comprehensively benchmarking applications for detecting copy number variation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007069

By:

Zhang, Le;
Bai, Wanyu;
Yuan, Na;
Du, Zhenglin

Publication type:

Article

Sparse discriminative latent characteristics for predicting cancer drug sensitivity from genomic features.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006743

By:

Knowles, David A.;
Bouchard, Gina;
Plevritis, Sylvia

Publication type:

Article

Leveraging genetic interactions for adverse drug-drug interaction prediction.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007068

By:

Qian, Sheng;
Liang, Siqi;
Yu, Haiyuan

Publication type:

Article

Modeling visual performance differences ‘around’ the visual field: A computational observer approach.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007063

By:

Kupers, Eline R.;
Carrasco, Marisa;
Winawer, Jonathan

Publication type:

Article

Representational structure or task structure? Bias in neural representational similarity analysis and a Bayesian method for reducing bias.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006299

By:

Cai, Ming Bo;
Schuck, Nicolas W.;
Pillow, Jonathan W.;
Niv, Yael

Publication type:

Article

Establishing a computational biology flipped classroom.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006764

By:

Compeau, Phillip

Publication type:

Article

Epidemic prevalence information on social networks can mediate emergent collective outcomes in voluntary vaccine schemes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006977

By:

Sharma, Anupama;
Menon, Shakti N.;
Sasidevan, V.;
Sinha, Sitabhra

Publication type:

Article

Wisdom of crowds in computational biology.

Published in:

2019

By:

Papin, Jason A.;
Mac Gabhann, Feilim

Publication type:

Editorial

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007070

By:

Sharma, Ajeet K.;
Sormanni, Pietro;
Ahmed, Nabeel;
Ciryam, Prajwal;
Friedrich, Ulrike A.;
Kramer, Günter;
O’Brien, Edward P.

Publication type:

Article

Efficient algorithms to discover alterations with complementary functional association in cancer.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006802

By:

Sarto Basso, Rebecca;
Hochbaum, Dorit S.;
Vandin, Fabio

Publication type:

Article

Forecasting national and regional influenza-like illness for the USA.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007013

By:

Ben-Nun, Michal;
Riley, Pete;
Turtle, James;
Bacon, David P.;
Riley, Steven

Publication type:

Article

Noise-precision tradeoff in predicting combinations of mutations and drugs.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006956

By:

Tendler, Avichai;
Zimmer, Anat;
Mayo, Avi;
Alon, Uri

Publication type:

Article

Host contact dynamics shapes richness and dominance of pathogen strains.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006530

By:

Pinotti, Francesco;
Böelle, Pierre-Yves;
Poletto, Chiara;
Fleury, Éric;
Guillemot, Didier

Publication type:

Article

Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006752

By:

Malyutina, Alina;
Majumder, Muntasir Mamun;
Wang, Wenyu;
Pessia, Alberto;
Heckman, Caroline A.;
Tang, Jing

Publication type:

Article

Detecting interaction networks in the human microbiome with conditional Granger causality.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007037

By:

Mainali, Kumar;
Bewick, Sharon;
Vecchio-Pagan, Briana;
Karig, David;
Fagan, William F.

Publication type:

Article

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007033

By:

Javanainen, Matti;
Enkavi, Giray;
Guixà-Gonzaléz, Ramon;
Kulig, Waldemar;
Martinez-Seara, Hector;
Levental, Ilya;
Vattulainen, Ilpo

Publication type:

Article

Evolution of major histocompatibility complex gene copy number.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007015

By:

Bentkowski, Piotr;
Radwan, Jacek

Publication type:

Article

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006753

By:

Iavarone, Elisabetta;
Yi, Jane;
Shi, Ying;
Zandt, Bas-Jan;
O’Reilly, Christian;
Van Geit, Werner;
Rössert, Christian;
Markram, Henry;
Hill, Sean L.

Publication type:

Article

Amplifying the redistribution of somato-dendritic inhibition by the interplay of three interneuron types.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006999

By:

Hertäg, Loreen;
Sprekeler, Henning

Publication type:

Article

Securing the future of research computing in the biosciences.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006958

By:

Leng, Joanna;
Shoura, Massa;
McLeish, Tom C. B.;
Real, Alan N.;
Hardey, Mariann;
McCafferty, James;
Ranson, Neil A.;
Harris, Sarah A.

Publication type:

Article

Ten simple rules for carrying out and writing meta-analyses.

Published in:

2019

By:

Forero, Diego A.;
Lopez-Leon, Sandra;
González-Giraldo, Yeimy;
Bagos, Pantelis G.

Publication type:

Editorial

DigChem: Identification of disease-gene-chemical relationships from Medline abstracts.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007022

By:

Kim, Jeongkyun;
Kim, Jung-jae;
Lee, Hyunju

Publication type:

Article

Beyond core object recognition: Recurrent processes account for object recognition under occlusion.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007001

By:

Rajaei, Karim;
Mohsenzadeh, Yalda;
Ebrahimpour, Reza;
Khaligh-Razavi, Seyed-Mahdi

Publication type:

Article

Spatial neuronal synchronization and the waveform of oscillations: Implications for EEG and MEG.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007055

By:

Schaworonkow, Natalie;
Nikulin, Vadim V.

Publication type:

Article

Human representation of multimodal distributions as clusters of samples.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007047

By:

Sun, Jingwei;
Li, Jian;
Zhang, Hang

Publication type:

Article

Interacting cells driving the evolution of multicellular life cycles.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006987

By:

Gao, Yuanxiao;
Traulsen, Arne;
Pichugin, Yuriy

Publication type:

Article

DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007012

By:

Kulikov, Victor;
Guo, Syuan-Ming;
Stone, Matthew;
Goodman, Allen;
Carpenter, Anne;
Bathe, Mark;
Lempitsky, Victor

Publication type:

Article

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007061

By:

Amini, Saman;
Jacobsen, Annika;
Ivanova, Olga;
Lijnzaad, Philip;
Heringa, Jaap;
Holstege, Frank C. P.;
Feenstra, K. Anton;
Kemmeren, Patrick

Publication type:

Article

A quick guide for using Microsoft OneNote as an electronic laboratory notebook.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006918

By:

Guerrero, Santiago;
López-Cortés, Andrés;
García-Cárdenas, Jennyfer M.;
Saa, Pablo;
Indacochea, Alberto;
Armendáriz-Castillo, Isaac;
Zambrano, Ana Karina;
Yumiceba, Verónica;
Pérez-Villa, Andy;
Guevara-Ramírez, Patricia;
Moscoso-Zea, Oswaldo;
Paredes, Joel;
Leone, Paola E.;
Paz-y-Miño, César

Publication type:

Article

Beyond Bouma's window: How to explain global aspects of crowding?

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006580

By:

Doerig, Adrien;
Bornet, Alban;
Rosenholtz, Ruth;
Francis, Gregory;
Clarke, Aaron M.;
Herzog, Michael H.

Publication type:

Article

Pathway-specific protein domains are predictive for human diseases.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007052

By:

Shim, Jung Eun;
Kim, Ji Hyun;
Shin, Junha;
Lee, Ji Eun;
Lee, Insuk

Publication type:

Article

A neuromechanistic model for rhythmic beat generation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006450

By:

Bose, Amitabha;
Byrne, Áine;
Rinzel, John

Publication type:

Article

Macroscopic phase resetting-curves determine oscillatory coherence and signal transfer in inter-coupled neural circuits.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007019

By:

Dumont, Grégory;
Gutkin, Boris

Publication type:

Article

Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007036

By:

Pandey, Vikash;
Hadadi, Noushin;
Hatzimanikatis, Vassily

Publication type:

Article

An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006933

By:

Karagianni, Niki;
Kranidioti, Ksanthi;
Fikas, Nikolaos;
Tsochatzidou, Maria;
Chouvardas, Panagiotis;
Denis, Maria C.;
Kollias, George;
Nikolaou, Christoforos

Publication type:

Article

The statistics of epidemic transitions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006917

By:

Drake, John M.;
Brett, Tobias S.;
Chen, Shiyang;
Epureanu, Bogdan I.;
Ferrari, Matthew J.;
Marty, Éric;
Miller, Paige B.;
O’Dea, Eamon B.;
O’Regan, Suzanne M.;
Park, Andrew W.;
Rohani, Pejman

Publication type:

Article

Notice of Republication: Ten simple rules for organizing a webinar series.

Published in:: 2019
Publication type:: Correction Notice

EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006942

By:

Liao, Chi-Chou;
Chen, Liang-Jwu;
Lo, Shuen-Fang;
Chen, Chi-Wei;
Chu, Yen-Wei

Publication type:

Article