Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 12

Results: 45

Neuronal population model of globular bushy cells covering unit-to-unit variability.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007563

By:

Ashida, Go;
Heinermann, Helen T.;
Kretzberg, Jutta

Publication type:

Article

Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007589

By:

Endo, Akira;
Uchida, Mitsuo;
Kucharski, Adam J.;
Funk, Sebastian

Publication type:

Article

Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007540

By:

Wang, Yongcui;
Chen, Shilong;
Chen, Luonan;
Wang, Yong

Publication type:

Article

A novel machine learning based approach for iPS progenitor cell identification.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007351

By:

Zhang, Haishan;
Shao, Ximing;
Peng, Yin;
Teng, Yanning;
Saravanan, Konda Mani;
Zhang, Huiling;
Li, Hongchang;
Wei, Yanjie

Publication type:

Article

Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007569

By:

Medvedev, Kirill E.;
Kinch, Lisa N.;
Schaeffer, R. Dustin;
Grishin, Nick V.

Publication type:

Article

Overlap matrix completion for predicting drug-associated indications.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007541

By:

Yang, Mengyun;
Luo, Huimin;
Li, Yaohang;
Wu, Fang-Xiang;
Wang, Jianxin

Publication type:

Article

Protons in small spaces: Discrete simulations of vesicle acidification.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007539

By:

Singh, Apeksha;
Marcoline, Frank V.;
Veshaguri, Salome;
Kao, Aimee W.;
Bruchez, Marcel;
Mindell, Joseph A.;
Stamou, Dimitrios;
Grabe, Michael

Publication type:

Article

Benchmarking network algorithms for contextualizing genes of interest.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007403

By:

Hill, Abby;
Gleim, Scott;
Kiefer, Florian;
Sigoillot, Frederic;
Loureiro, Joseph;
Jenkins, Jeremy;
Morris, Melody K.

Publication type:

Article

Interkinetic nuclear movements promote apical expansion in pseudostratified epithelia at the expense of apicobasal elongation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007171

By:

Ferreira, Marina A.;
Despin-Guitard, Evangeline;
Duarte, Fernando;
Degond, Pierre;
Theveneau, Eric

Publication type:

Article

A Multi-State Model of the CaMKII Dodecamer Suggests a Role for Calmodulin in Maintenance of Autophosphorylation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1006941

By:

Pharris, Matthew C.;
Patel, Neal M.;
VanDyk, Tyler G.;
Bartol, Thomas M.;
Sejnowski, Terrence J.;
Kennedy, Mary B.;
Stefan, Melanie I.;
Kinzer-Ursem, Tamara L.

Publication type:

Article

Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007562

By:

Yan, Jinyuan;
Estanbouli, Henri;
Liao, Chen;
Kim, Wook;
Monk, Jonathan M.;
Rahman, Rayees;
Kamboj, Mini;
Palsson, Bernhard O.;
Qiu, Weigang;
Xavier, Joao B.

Publication type:

Article

Regulatory context drives conservation of glycine riboswitch aptamers.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007564

By:

Crum, Matt;
Ram-Mohan, Nikhil;
Meyer, Michelle M.

Publication type:

Article

Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007519

By:

Yousefi, Razie;
Rowicka, Maga

Publication type:

Article

Chemotaxis in external fields: Simulations for active magnetic biological matter.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007548

By:

Codutti, Agnese;
Bente, Klaas;
Faivre, Damien;
Klumpp, Stefan

Publication type:

Article

Evidence for a multi-level trophic organization of the human gut microbiome.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007524

By:

Wang, Tong;
Goyal, Akshit;
Dubinkina, Veronika;
Maslov, Sergei

Publication type:

Article

From energy to cellular forces in the Cellular Potts Model: An algorithmic approach.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007459

By:

Rens, Elisabeth G.;
Edelstein-Keshet, Leah

Publication type:

Article

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007543

By:

Barry, Christopher;
Schmitz, Matthew T.;
Argus, Cara;
Bolin, Jennifer M.;
Probasco, Mitchell D.;
Leng, Ning;
Duffin, Bret M.;
Steill, John;
Swanson, Scott;
McIntosh, Brian E.;
Stewart, Ron;
Kendziorski, Christina;
Thomson, James A.;
Bacher, Rhonda

Publication type:

Article

Statistical inference in ensemble modeling of cellular metabolism.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007536

By:

Hameri, Tuure;
Boldi, Marc-Olivier;
Hatzimanikatis, Vassily

Publication type:

Article

The dynamics of motor learning through the formation of internal models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007118

By:

Pierella, Camilla;
Casadio, Maura;
Mussa-Ivaldi, Ferdinando A.;
Solla, Sara A.

Publication type:

Article

Representation learning of genomic sequence motifs with convolutional neural networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007560

By:

Koo, Peter K.;
Eddy, Sean R.

Publication type:

Article

Avoidance of non-localizable obstacles in echolocating bats: A robotic model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007550

By:

Bou Mansour, Carl;
Koreman, Elijah;
Steckel, Jan;
Peremans, Herbert;
Vanderelst, Dieter

Publication type:

Article

Establishment of computational biology in Greece and Cyprus: Past, present, and future.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007532

By:

Chasapi, Anastasia;
Aivaliotis, Michalis;
Angelis, Lefteris;
Chanalaris, Anastasios;
Iliopoulos, Ioannis;
Kappas, Ilias;
Karapiperis, Christos;
Kyrpides, Nikos C.;
Pafilis, Evangelos;
Panteris, Eleftherios;
Topalis, Pantelis;
Tsiamis, George;
Vizirianakis, Ioannis S.;
Vlassi, Metaxia;
Promponas, Vasilis J.;
Ouzounis, Christos A.

Publication type:

Article

Nine quick tips for analyzing network data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007434

By:

Miele, Vincent;
Matias, Catherine;
Robin, Stéphane;
Dray, Stéphane

Publication type:

Article

Large benefits to youth-focused HIV treatment-as-prevention efforts in generalized heterosexual populations: An agent-based simulation model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007561

By:

Mittler, John E.;
Murphy, James T.;
Stansfield, Sarah E.;
Peebles, Kathryn C.;
Gottlieb, Geoffrey S.;
Abernethy, Neil F.;
Reid, Molly C.;
Goodreau, Steven M.;
Herbeck, Joshua T.

Publication type:

Article

Motion prediction enables simulated MR-imaging of freely moving model organisms.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1006997

By:

Reischl, Markus;
Jouda, Mazin;
MacKinnon, Neil;
Fuhrer, Erwin;
Bakhtina, Natalia;
Bartschat, Andreas;
Mikut, Ralf;
Korvink, Jan G.

Publication type:

Article

ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007556

By:

Li, Jiajin;
Jew, Brandon;
Zhan, Lingyu;
Hwang, Sungoo;
Coppola, Giovanni;
Freimer, Nelson B.;
Sul, Jae Hoon

Publication type:

Article

Revisiting the "satisfaction of spatial restraints" approach of MODELLER for protein homology modeling.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007219

By:

Janson, Giacomo;
Grottesi, Alessandro;
Pietrosanto, Marco;
Ausiello, Gabriele;
Guarguaglini, Giulia;
Paiardini, Alessandro

Publication type:

Article

Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007527

By:

Jandrasits, Christine;
Kröger, Stefan;
Haas, Walter;
Renard, Bernhard Y.

Publication type:

Article

Stability of spontaneous, correlated activity in mouse auditory cortex.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007360

By:

Betzel, Richard F.;
Wood, Katherine C.;
Angeloni, Christopher;
Neimark Geffen, Maria;
Bassett, Danielle S.

Publication type:

Article

Probing neural networks for dynamic switches of communication pathways.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007551

By:

Finger, Holger;
Gast, Richard;
Gerloff, Christian;
Engel, Andreas K.;
König, Peter

Publication type:

Article

Estimation of temporal covariances in pathogen dynamics using Bayesian multivariate autoregressive models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007492

By:

Mair, Colette;
Nickbakhsh, Sema;
Reeve, Richard;
McMenamin, Jim;
Reynolds, Arlene;
Gunson, Rory N.;
Murcia, Pablo R.;
Matthews, Louise

Publication type:

Article

Molecular sampling at logarithmic rates for next-generation sequencing.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007537

By:

Horn, Caroline;
Salzman, Julia

Publication type:

Article

NUFEB: A massively parallel simulator for individual-based modelling of microbial communities.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007125

By:

Li, Bowen;
Taniguchi, Denis;
Gedara, Jayathilake Pahala;
Gogulancea, Valentina;
Gonzalez-Cabaleiro, Rebeca;
Chen, Jinju;
McGough, Andrew Stephen;
Ofiteru, Irina Dana;
Curtis, Thomas P.;
Zuliani, Paolo

Publication type:

Article

The benefits of insect-swarm hunting to echolocating bats, and its influence on the evolution of bat echolocation signals.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006873

By:

Boonman, Arjan;
Fenton, Brock;
Yovel, Yossi

Publication type:

Article

Incomplete information about the partner affects the development of collaborative strategies in joint action.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006385

By:

Chackochan, Vinil T.;
Sanguineti, Vittorio

Publication type:

Article

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007485

By:

Kønig, Simon Mathis;
Rissler, Vendela;
Terkelsen, Thilde;
Lambrughi, Matteo;
Papaleo, Elena

Publication type:

Article

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007525

By:

Du, Bin;
Yang, Laurence;
Lloyd, Colton J.;
Fang, Xin;
Palsson, Bernhard O.

Publication type:

Article

Inferring reaction network structure from single-cell, multiplex data, using toric systems theory.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007311

By:

Wang, Shu;
Lin, Jia-Ren;
Sontag, Eduardo D.;
Sorger, Peter K.

Publication type:

Article

The effect of inhibition on rate code efficiency indicators.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007545

By:

Barta, Tomas;
Kostal, Lubomir

Publication type:

Article

CBNA: A control theory based method for identifying coding and non-coding cancer drivers.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007538

By:

Pham, Vu V. H.;
Liu, Lin;
Bracken, Cameron P.;
Goodall, Gregory J.;
Long, Qi;
Li, Jiuyong;
Le, Thuc D.

Publication type:

Article

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007510

By:

Kang, Kai;
Meng, Qian;
Shats, Igor;
Umbach, David M.;
Li, Melissa;
Li, Yuanyuan;
Li, Xiaoling;
Li, Leping

Publication type:

Article

Statistics of correlated percolation in a bacterial community.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007508

By:

Zhai, Xiaoling;
Larkin, Joseph W.;
Kikuchi, Kaito;
Redford, Samuel E.;
Roy, Ushasi;
Süel, Gürol M.;
Mugler, Andrew

Publication type:

Article

A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007455

By:

Tuttle, Austin;
Riera Diaz, Jorge;
Mori, Yoichiro

Publication type:

Article

A cell-based probabilistic approach unveils the concerted action of miRNAs.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007204

By:

Mahlab-Aviv, Shelly;
Linial, Nathan;
Linial, Michal

Publication type:

Article

Autistic traits influence the strategic diversity of information sampling: Insights from two-stage decision models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006964

By:

Lu, Haoyang;
Yi, Li;
Zhang, Hang

Publication type:

Article