Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 11

Results: 39

Determinants of combination GM-CSF immunotherapy and oncolytic virotherapy success identified through in silico treatment personalization.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007495

By:

Cassidy, Tyler;
Craig, Morgan

Publication type:

Article

The role of intracellular interactions in the collective polarization of tissues and its interplay with cellular geometry.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007454

By:

Shadkhoo, Shahriar;
Mani, Madhav

Publication type:

Article

A novel network control model for identifying personalized driver genes in cancer.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007520

By:

Guo, WeiFeng;
Zhang, Shao-Wu;
Zeng, Tao;
Li, Yan;
Gao, Jianxi;
Chen, Luonan

Publication type:

Article

Efficient sentinel surveillance strategies for preventing epidemics on networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007517

By:

Colman, Ewan;
Holme, Petter;
Sayama, Hiroki;
Gershenson, Carlos

Publication type:

Article

Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007496

By:

Stobbe, Miranda D.;
Thun, Gian A.;
Diéguez-Docampo, Andrea;
Oliva, Meritxell;
Whalley, Justin P.;
Raineri, Emanuele;
Gut, Ivo G.

Publication type:

Article

Predicting Meridian in Chinese traditional medicine using machine learning approaches.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007249

By:

Wang, Yinyin;
Jafari, Mohieddin;
Tang, Yun;
Tang, Jing

Publication type:

Article

Clustering-independent analysis of genomic data using spectral simplicial theory.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007509

By:

Govek, Kiya W.;
Yamajala, Venkata S.;
G. Camara, Pablo

Publication type:

Article

Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007486

By:

Reich, Nicholas G.;
McGowan, Craig J.;
Yamana, Teresa K.;
Tushar, Abhinav;
Ray, Evan L.;
Osthus, Dave;
Kandula, Sasikiran;
Brooks, Logan C.;
Crawford-Crudell, Willow;
Gibson, Graham Casey;
Moore, Evan;
Silva, Rebecca;
Biggerstaff, Matthew;
Johansson, Michael A.;
Rosenfeld, Roni;
Shaman, Jeffrey

Publication type:

Article

Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007493

By:

Anttila, Jani V.;
Shubin, Mikhail;
Cairns, Johannes;
Borse, Florian;
Guo, Qingli;
Mononen, Tommi;
Vázquez-García, Ignacio;
Pulkkinen, Otto;
Mustonen, Ville

Publication type:

Article

Anticipatory coadaptation of ankle stiffness and sensorimotor gain for standing balance.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007463

By:

Le Mouel, Charlotte;
Brette, Romain

Publication type:

Article

Forecasting dengue and influenza incidences using a sparse representation of Google trends, electronic health records, and time series data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007518

By:

Rangarajan, Prashant;
Mody, Sandeep K.;
Marathe, Madhav

Publication type:

Article

An inelastic quadrupedal model discovers four-beat walking, two-beat running, and pseudo-elastic actuation as energetically optimal.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007444

By:

Polet, Delyle T.;
Bertram, John E. A.

Publication type:

Article

Cancer recurrence times from a branching process model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007423

By:

Avanzini, Stefano;
Antal, Tibor

Publication type:

Article

Predicting neuronal dynamics with a delayed gain control model.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007484

By:

Zhou, Jingyang;
Benson, Noah C.;
Kay, Kendrick;
Winawer, Jonathan

Publication type:

Article

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006863

By:

Watts, George S.;
Thornton, James E.;
Youens-Clark, Ken;
Ponsero, Alise J.;
Slepian, Marvin J.;
Menashi, Emmanuel;
Hu, Charles;
Deng, Wuquan;
Armstrong, David G.;
Reed, Spenser;
Cranmer, Lee D.;
Hurwitz, Bonnie L.

Publication type:

Article

A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007468

By:

Zhao, Chen;
Mirando, Adam C.;
Sové, Richard J.;
Medeiros, Thalyta X.;
Annex, Brian H.;
Popel, Aleksander S.

Publication type:

Article

An in silico analysis of robust but fragile gene regulation links enhancer length to robustness.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007497

By:

Barr, Kenneth;
Reinitz, John;
Radulescu, Ovidiu

Publication type:

Article

Large-scale cortical travelling waves predict localized future cortical signals.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007316

By:

Alexander, David M.;
Ball, Tonio;
Schulze-Bonhage, Andreas;
van Leeuwen, Cees

Publication type:

Article

Functional diversity among sensory neurons from efficient coding principles.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007476

By:

Gjorgjieva, Julijana;
Meister, Markus;
Sompolinsky, Haim

Publication type:

Article

No substantial change in the balance between model-free and model-based control via training on the two-step task.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007443

By:

Grosskurth, Elmar D.;
Bach, Dominik R.;
Economides, Marcos;
Huys, Quentin J. M.;
Holper, Lisa

Publication type:

Article

A model of how depth facilitates scene-relative object motion perception.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007397

By:

Layton, Oliver W.;
Niehorster, D. C.

Publication type:

Article

Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007268

By:

Wang, Jilin W. J. L.;
Lombardi, Fabrizio;
Zhang, Xiyun;
Anaclet, Christelle;
Ivanov, Plamen Ch.

Publication type:

Article

Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007488

By:

Shi, Jifan;
Li, Tiejun;
Chen, Luonan;
Aihara, Kazuyuki

Publication type:

Article

Uncovering the subtype-specific temporal order of cancer pathway dysregulation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007451

By:

Khakabimamaghani, Sahand;
Ding, Dujian;
Snow, Oliver;
Ester, Martin

Publication type:

Article

Adaptation in structured populations and fuzzy boundaries between hard and soft sweeps.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007426

By:

Zheng, Yichen;
Wiehe, Thomas

Publication type:

Article

A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006668

By:

Mapder, Tarunendu;
Clifford, Sam;
Aaskov, John;
Burrage, Kevin

Publication type:

Article

Tonic exploration governs both flexibility and lapses.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007475

By:

Ebitz, R. Becket;
Sleezer, Brianna J.;
Jedema, Hank P.;
Bradberry, Charles W.;
Hayden, Benjamin Y.

Publication type:

Article

Prediction of PD-L1 inhibition effects for HIV-infected individuals.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007401

By:

Zheltkova, Valerya;
Argilaguet, Jordi;
Peligero, Cristina;
Bocharov, Gennady;
Meyerhans, Andreas

Publication type:

Article

Network-based analysis of prostate cancer cell lines reveals novel marker gene candidates associated with radioresistance and patient relapse.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007460

By:

Seifert, Michael;
Peitzsch, Claudia;
Gorodetska, Ielizaveta;
Börner, Caroline;
Klink, Barbara;
Dubrovska, Anna

Publication type:

Article

Neural field models for latent state inference: Application to large-scale neuronal recordings.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007442

By:

Rule, Michael E.;
Schnoerr, David;
Hennig, Matthias H.;
Sanguinetti, Guido

Publication type:

Article

Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007435

By:

Zhang, Jiajun;
Zhu, Wenbo;
Wang, Qianliang;
Gu, Jiayu;
Huang, L. Frank;
Sun, Xiaoqiang

Publication type:

Article

Bayesian inference of metabolic kinetics from genome-scale multiomics data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007424

By:

St. John, Peter C.;
Strutz, Jonathan;
Broadbelt, Linda J.;
Tyo, Keith E. J.;
Bomble, Yannick J.

Publication type:

Article

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007419

By:

Plyusnin, Ilya;
Holm, Liisa;
Törönen, Petri

Publication type:

Article

Feasibility of functional magnetic resonance imaging of ocular dominance and orientation preference in primary visual cortex.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007418

By:

Menezes de Oliveira, Marilia;
Pang, James C.;
Robinson, Peter A.;
Liu, Xiaochen;
Schira, Mark M.

Publication type:

Article

Direct prediction of regulatory elements from partial data without imputation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007399

By:

Zhang, Yu;
Mahony, Shaun

Publication type:

Article

Cytoplasmic convection currents and intracellular temperature gradients.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007372

By:

Howard, Rachel;
Scheiner, Aaron;
Cunningham, Jessica;
Gatenby, Robert

Publication type:

Article

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007337

By:

Vijayabaskar, M. S.;
Goode, Debbie K.;
Obier, Nadine;
Lichtinger, Monika;
Emmett, Amber M. L.;
Abidin, Fatin Z.;
Shar, Nisar;
Hannah, Rebecca;
Assi, Salam A.;
Lie-A-Ling, Michael;
Gottgens, Berthold;
Lacaud, Georges;
Kouskoff, Valerie;
Bonifer, Constanze;
Westhead, David R.

Publication type:

Article

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006555

By:

Jansen, Camden;
Ramirez, Ricardo N.;
El-Ali, Nicole C.;
Gomez-Cabrero, David;
Tegner, Jesper;
Merkenschlager, Matthias;
Conesa, Ana;
Mortazavi, Ali

Publication type:

Article

Competing endogenous RNA crosstalk at system level.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007474

By:

Miotto, Mattia;
Marinari, Enzo;
De Martino, Andrea

Publication type:

Article