Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 9

Results: 37

Emergence of spontaneous assembly activity in developing neural networks without afferent input.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006421

By:

Triplett, Marcus A.;
Avitan, Lilach;
Goodhill, Geoffrey J.

Publication type:

Article

Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006431

By:

Hunt, Kristopher A.;
Jennings, Ryan M.;
Inskeep, William P.;
Carlson, Ross P.

Publication type:

Article

Multivariate classification of neuroimaging data with nested subclasses: Biased accuracy and implications for hypothesis testing.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006486

By:

Jamalabadi, Hamidreza;
Alizadeh, Sarah;
Schönauer, Monika;
Leibold, Christian;
Gais, Steffen

Publication type:

Article

An information theoretic treatment of sequence-to-expression modeling.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006459

By:

Khajouei, Farzaneh;
Sinha, Saurabh

Publication type:

Article

Quantitative single cell analysis uncovers the life/death decision in CD95 network.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006368

By:

Buchbinder, Jörn H.;
Pischel, Dennis;
Sundmacher, Kai;
Flassig, Robert J.;
Lavrik, Inna N.

Publication type:

Article

Comparison of fluctuations in global network topology of modeled and empirical brain functional connectivity.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006497

By:

Fukushima, Makoto;
Sporns, Olaf

Publication type:

Article

Individualised aspiration dynamics: Calculation by proofs.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006035

By:

Wu, Bin;
Zhou, Lei

Publication type:

Article

Inferring decoding strategies for multiple correlated neural populations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006371

By:

Lakshminarasimhan, Kaushik J.;
Pouget, Alexandre;
DeAngelis, Gregory C.;
Angelaki, Dora E.;
Pitkow, Xaq

Publication type:

Article

Proteome-scale relationships between local amino acid composition and protein fates and functions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006256

By:

Cascarina, Sean M.;
Ross, Eric D.

Publication type:

Article

OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO<sub>2</sub> fixation potential of Escherichia coli.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006492

By:

Hädicke, Oliver;
von Kamp, Axel;
Aydogan, Timur;
Klamt, Steffen

Publication type:

Article

Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006436

By:

Lyu, Yafei;
Xue, Lingzhou;
Zhang, Feipeng;
Koch, Hillary;
Saba, Laura;
Kechris, Katerina;
Li, Qunhua

Publication type:

Article

Maintaining maximal metabolic flux by gene expression control.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006412

By:

Planqué, Robert;
Hulshof, Josephus;
Teusink, Bas;
Hendriks, Johannes C.;
Bruggeman, Frank J.

Publication type:

Article

Transition state characteristics during cell differentiation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006405

By:

Brackston, Rowan D.;
Lakatos, Eszter;
Stumpf, Michael P. H.

Publication type:

Article

Robust spatial memory maps encoded by networks with transient connections.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006433

By:

Babichev, Andrey;
Morozov, Dmitriy;
Dabaghian, Yuri

Publication type:

Article

All-atom normal mode dynamics of HIV-1 capsid.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006456

By:

Na, Hyuntae;
Song, Guang

Publication type:

Article

Evolutionary footprint of epistasis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006426

By:

Pedruzzi, Gabriele;
Barlukova, Ayuna;
Rouzine, Igor M.

Publication type:

Article

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006423

By:

Migliore, Rosanna;
Lupascu, Carmen A.;
Bologna, Luca L.;
Romani, Armando;
Courcol, Jean-Denis;
Antonel, Stefano;
Van Geit, Werner A. H.;
Thomson, Alex M.;
Mercer, Audrey;
Lange, Sigrun;
Falck, Joanne;
Rössert, Christian A.;
Shi, Ying;
Hagens, Olivier;
Pezzoli, Maurizio;
Freund, Tamas F.;
Kali, Szabolcs;
Muller, Eilif B.;
Schürmann, Felix;
Markram, Henry

Publication type:

Article

Abstract concept learning in a simple neural network inspired by the insect brain.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006435

By:

Cope, Alex J.;
Vasilaki, Eleni;
Minors, Dorian;
Sabo, Chelsea;
Marshall, James A. R.;
Barron, Andrew B.

Publication type:

Article

Model-based spatial navigation in the hippocampus-ventral striatum circuit: A computational analysis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006316

By:

Stoianov, Ivilin Peev;
Pennartz, Cyriel M. A.;
Lansink, Carien S.;
Pezzulo, Giovani

Publication type:

Article

Correction: A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling.

Published in:

2018

By:

Vedula, Vijay;
Lee, Juhyun;
Xu, Hao;
Jay Kuo, C.-C.;
Hsiai, Tzung K.;
Marsden, Alison L.

Publication type:

Correction Notice

Emergent mechanics of actomyosin drive punctuated contractions and shape network morphology in the cell cortex.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006344

By:

Miller, Callie J.;
Harris, Demetrius;
Weaver, Robert;
Ermentrout, G. Bard;
Davidson, Lance A.

Publication type:

Article

Patient-specific pulse wave propagation model identifies cardiovascular risk characteristics in hemodialysis patients.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006417

By:

Poleszczuk, Jan;
Debowska, Malgorzata;
Dabrowski, Wojciech;
Wojcik-Zaluska, Alicja;
Zaluska, Wojciech;
Waniewski, Jacek

Publication type:

Article

Modeling and prediction of clinical symptom trajectories in Alzheimer’s disease using longitudinal data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006376

By:

Bhagwat, Nikhil;
Viviano, Joseph D.;
Voineskos, Aristotle N.;
Chakravarty, M. Mallar;
null, null

Publication type:

Article

Informational structures: A dynamical system approach for integrated information.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006154

By:

Esteban, Francisco J.;
Galadí, Javier;
Langa, José A.;
Portillo, José R.;
Soler-Toscano, Fernando

Publication type:

Article

The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006439

By:

Hill, Edward M.;
Tildesley, Michael J.;
Prosser, Diann J.;
Takekawa, John Y.;
Xiao, Xiangming;
House, Thomas;
Gilbert, Marius;
Dhingra, Madhur S.;
Morzaria, Subhash;
Kalpravidh, Wantanee;
Osmani, Muzaffar G.;
Brum, Eric;
Yamage, Mat;
Kalam, Md. A.

Publication type:

Article

Selective ion permeation involves complexation with carboxylates and lysine in a model human sodium channel.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006398

By:

Flood, Emelie;
Boiteux, Céline;
Allen, Toby W.

Publication type:

Article

A Markov chain for numerical chromosomal instability in clonally expanding populations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006447

By:

Elizalde, Sergi;
Laughney, Ashley M.;
Bakhoum, Samuel F.

Publication type:

Article

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006458

By:

Pantsar, Tatu;
Rissanen, Sami;
Dauch, Daniel;
Laitinen, Tuomo;
Vattulainen, Ilpo;
Poso, Antti

Publication type:

Article

Implications of alternative routes to APC/C inhibition by the mitotic checkpoint complex.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006449

By:

Gross, Fridolin;
Bonaiuti, Paolo;
Hauf, Silke;
Ciliberto, Andrea

Publication type:

Article

Comparing two classes of biological distribution systems using network analysis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006428

By:

Papadopoulos, Lia;
Blinder, Pablo;
Ronellenfitsch, Henrik;
Klimm, Florian;
Katifori, Eleni;
Kleinfeld, David;
Bassett, Danielle S.

Publication type:

Article

Co-evolution networks of HIV/HCV are modular with direct association to structure and function.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006409

By:

Quadeer, Ahmed Abdul;
Morales-Jimenez, David;
McKay, Matthew R.

Publication type:

Article

Network mechanisms underlying the role of oscillations in cognitive tasks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006430

By:

Schmidt, Helmut;
Avitabile, Daniele;
Montbrió, Ernest;
Roxin, Alex

Publication type:

Article

A fully autonomous terrestrial bat-like acoustic robot.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006406

By:

Eliakim, Itamar;
Cohen, Zahi;
Kosa, Gabor;
Yovel, Yossi

Publication type:

Article

Inter-nucleosomal communication between histone modifications for nucleosome phasing.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006416

By:

Chen, Weizhong;
Liu, Yi;
Zhu, Shanshan;
Chen, Guoyu;
Han, Jing-Dong J.

Publication type:

Article

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006378

By:

Risso, Davide;
Purvis, Liam;
Fletcher, Russell B.;
Das, Diya;
Ngai, John;
Dudoit, Sandrine;
Purdom, Elizabeth

Publication type:

Article

SIG-DB: Leveraging homomorphic encryption to securely interrogate privately held genomic databases.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006454

By:

Titus, Alexander J.;
Flower, Audrey;
Hagerty, Patrick;
Gamble, Paul;
Lewis, Charlie;
Stavish, Todd;
O’Connell, Kevin P.;
Shipley, Greg;
Rogers, Stephanie M.

Publication type:

Article

Optimal multi-source forecasting of seasonal influenza.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006236

By:

Ertem, Zeynep;
Raymond, Dorrie;
Meyers, Lauren Ancel

Publication type:

Article