Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 8

Results: 48

An automated approach to the quantitation of vocalizations and vocal learning in the songbird.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006437

By:

Mets, David G.;
Brainard, Michael S.

Publication type:

Article

Human Pavlovian fear conditioning conforms to probabilistic learning.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006243

By:

Tzovara, Athina;
Korn, Christoph W.;
Bach, Dominik R.

Publication type:

Article

Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006392

By:

Coggan, Jay S.;
Keller, Daniel;
Markram, Henry;
Schürmann, Felix;
Magistretti, Pierre J.;
Calì, Corrado;
Lehväslaiho, Heikki

Publication type:

Article

Ten simple rules for measuring the impact of workshops.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006191

By:

Sufi, Shoaib;
Nenadic, Aleksandra;
Silva, Raniere;
Balzano, Melissa;
Coelho, Sara;
Ford, Heather;
Jones, Catherine;
Higgins, Vanessa;
Duckles, Beth;
Simera, Iveta;
de Beyer, Jennifer A.;
Struthers, Caroline;
Nurmikko-Fuller, Terhi;
Bellis, Louisa;
Miah, Wadud;
Wilde, Adriana;
Emsley, Iain;
Philippe, Olivier

Publication type:

Article

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006341

By:

Raden, Martin;
Mohamed, Mostafa Mahmoud;
Ali, Syed Mohsin;
Backofen, Rolf

Publication type:

Article

A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006410

By:

Linneweber, Gerit A.;
Claeys, Annelies;
Liu, Guangda;
Hassan, Bassem A.;
Sneyders, Manu;
Nicasy, Hans;
Scheunders, Paul;
Nath, Tanmay;
De Backer, Steve;
Weyn, Barbara;
Guo, Zhengyu;
Li, Jin;
Yu, Peng;
Bengochea, Mercedes

Publication type:

Article

Mechanisms of hysteresis in human brain networks during transitions of consciousness and unconsciousness: theoretical principles and empirical evidence.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006424

By:

Kim, Hyoungkyu;
Moon, Joon-Young;
Mashour, George A.;
Lee, UnCheol

Publication type:

Article

The low spike density of HIV may have evolved because of the effects of T helper cell depletion on affinity maturation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006408

By:

Amitai, Assaf;
Chakraborty, Arup K.;
Kardar, Mehran

Publication type:

Article

New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006077

By:

Patrushev, Ilya;
James-Zorn, Christina;
Ciau-Uitz, Aldo;
Patient, Roger;
Gilchrist, Michael J.

Publication type:

Article

Correction: Subgraphs of functional brain networks identify dynamical constraints of cognitive control.

Published in:

2018

By:

Khambhati, Ankit N.;
Medaglia, John D.;
Karuza, Elisabeth A.;
Thompson-Schill, Sharon L.;
Bassett, Danielle S.

Publication type:

Correction Notice

General differential Hebbian learning: Capturing temporal relations between events in neural networks and the brain.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006227

By:

Zappacosta, Stefano;
Mannella, Francesco;
Mirolli, Marco;
Baldassarre, Gianluca

Publication type:

Article

Identification of excitatory-inhibitory links and network topology in large-scale neuronal assemblies from multi-electrode recordings.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006381

By:

Pastore, Vito Paolo;
Massobrio, Paolo;
Godjoski, Aleksandar;
Martinoia, Sergio

Publication type:

Article

Dorsal anterior cingulate-brainstem ensemble as a reinforcement meta-learner.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006370

By:

Silvetti, Massimo;
Vassena, Eliana;
Abrahamse, Elger;
Verguts, Tom

Publication type:

Article

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006418

By:

Chen, Xing;
Yin, Jun;
Qu, Jia;
Huang, Li

Publication type:

Article

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006372

By:

van Bömmel, Alena;
Love, Michael I.;
Chung, Ho-Ryun;
Vingron, Martin

Publication type:

Article

Lineage space and the propensity of bacterial cells to undergo growth transitions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006380

By:

Bandyopadhyay, Arnab;
Wang, Huijing;
Ray, J. Christian J.

Publication type:

Article

NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006387

By:

Drysdale, Peter M.;
Rennie, Chris J.;
Sanz-Leon, Paula;
Robinson, Peter A.;
Knock, Stuart A.;
Zhao, Xuelong;
Abeysuriya, Romesh G.;
Fung, Felix K.

Publication type:

Article

Domes and cones: Adhesion-induced fission of membranes by ESCRT proteins.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006422

By:

Agudo-Canalejo, Jaime;
Lipowsky, Reinhard

Publication type:

Article

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006360

By:

Garrido-Martín, Diego;
Palumbo, Emilio;
Guigó, Roderic;
Breschi, Alessandra

Publication type:

Article

The role of curvature feedback in the energetics and dynamics of lamprey swimming: A closed-loop model.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006324

By:

Hamlet, Christina L.;
Hoffman, Kathleen A.;
Tytell, Eric D.;
Fauci, Lisa J.

Publication type:

Article

Exploration of the feature space of de novo developed post-transcriptional riboregulators.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006170

By:

Peters, Gert;
Maertens, Jo;
Lammertyn, Jeroen;
De Mey, Marjan

Publication type:

Article

Unraveling the mechanism of the cadherin-catenin-actin catch bond.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006399

By:

Adhikari, Shishir;
Moran, Jacob;
Weddle, Christopher;
Hinczewski, Michael

Publication type:

Article

How ecological feedbacks between human population and land cover influence sustainability.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006389

By:

Henderson, Kirsten;
Loreau, Michel

Publication type:

Article

MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006413

By:

Vlachos, Christos;
Kofler, Robert

Publication type:

Article

Characterising seasonal influenza epidemiology using primary care surveillance data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006377

By:

Cope, Robert C.;
Ross, Joshua V.;
Chilver, Monique;
Stocks, Nigel P.;
Mitchell, Lewis

Publication type:

Article

Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006211

By:

Cazelles, Bernard;
Champagne, Clara;
Dureau, Joseph

Publication type:

Article

Interplay of multiple pathways and activity-dependent rules in STDP.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006184

By:

Vignoud, Gaëtan;
Venance, Laurent;
Touboul, Jonathan D.

Publication type:

Article

Integration and multiplexing of positional and contextual information by the hippocampal network.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006320

By:

Posani, Lorenzo;
Cocco, Simona;
Monasson, Rémi

Publication type:

Article

Regulation of Pom cluster dynamics in Myxococcus xanthus.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006358

By:

Bergeler, Silke;
Frey, Erwin

Publication type:

Article

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006390

By:

Lee, Kyubum;
Famiglietti, Maria Livia;
McMahon, Aoife;
Wei, Chih-Hsuan;
MacArthur, Jacqueline Ann Langdon;
Poux, Sylvain;
Breuza, Lionel;
Bridge, Alan;
Cunningham, Fiona;
Xenarios, Ioannis;
Lu, Zhiyong

Publication type:

Article

riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006169

By:

Lauria, Fabio;
Tebaldi, Toma;
Bernabò, Paola;
Groen, Ewout J. N.;
Gillingwater, Thomas H.;
Viero, Gabriella

Publication type:

Article

SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006369

By:

Zhang, Rong;
Ren, Zhao;
Chen, Wei

Publication type:

Article

Discerning evolutionary trends in post-translational modification and the effect of intrinsic disorder: Analysis of methylation, acetylation and ubiquitination sites in human proteins.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006349

By:

Narasumani, Mohanalakshmi;
Harrison, Paul M.

Publication type:

Article

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006361

By:

Tian, Luyi;
Su, Shian;
Dong, Xueyi;
Amann-Zalcenstein, Daniela;
Biben, Christine;
Seidi, Azadeh;
Hilton, Douglas J.;
Naik, Shalin H.;
Ritchie, Matthew E.

Publication type:

Article

Modeling subjective relevance in schizophrenia and its relation to aberrant salience.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006319

By:

Katthagen, Teresa;
Mathys, Christoph;
Deserno, Lorenz;
Walter, Henrik;
Kathmann, Norbert;
Heinz, Andreas;
Schlagenhauf, Florian

Publication type:

Article

Correction: Limits on reliable information flows through stochastic populations.

Published in:: 2018
Publication type:: Correction Notice

Flexible resonance in prefrontal networks with strong feedback inhibition.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006357

By:

Sherfey, Jason S.;
Ardid, Salva;
Hass, Joachim;
Hasselmo, Michael E.;
Kopell, Nancy J.

Publication type:

Article

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006242

By:

Bradley, Patrick H.;
Nayfach, Stephen;
Pollard, Katherine S.

Publication type:

Article

Network supporting contextual fear learning after dorsal hippocampal damage has increased dependence on retrosplenial cortex.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006207

By:

Coelho, Cesar A. O.;
Ferreira, Tatiana L.;
Kramer-Soares, Juliana C.;
Sato, João R.;
Oliveira, Maria Gabriela M.

Publication type:

Article

Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006356

By:

Yurkovich, James T.;
Alcantar, Miguel A.;
Haiman, Zachary B.;
Palsson, Bernhard O.

Publication type:

Article

A new dynamic correlation algorithm reveals novel functional aspects in single cell and bulk RNA-seq data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006391

By:

Yu, Tianwei

Publication type:

Article

Rare-event sampling of epigenetic landscapes and phenotype transitions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006336

By:

Tse, Margaret J.;
Chu, Brian K.;
Gallivan, Cameron P.;
Read, Elizabeth L.

Publication type:

Article

A mechanism for bistability in glycosylation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006348

By:

McDonald, Andrew G.;
Tipton, Keith F.;
Davey, Gavin P.

Publication type:

Article

The permeation mechanism of organic cations through a CNG mimic channel.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006295

By:

Rodriguez, Alex;
Napolitano, Luisa M. R.;
Laio, Alessandro;
Torre, Vincent;
De March, Matteo;
Onesti, Silvia;
Marchesi, Arin

Publication type:

Article

Profiling cellular morphodynamics by spatiotemporal spectrum decomposition.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006321

By:

Ma, Xiao;
Danuser, Gaudenz;
Dagliyan, Onur;
Hahn, Klaus M.

Publication type:

Article

Irrelevance by inhibition: Learning, computation, and implications for schizophrenia.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006315

By:

Insel, Nathan;
Guerguiev, Jordan;
Richards, Blake A.

Publication type:

Article

Modeling the impact of changes in day-care contact patterns on the dynamics of varicella transmission in France between 1991 and 2015.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006334

By:

Marziano, Valentina;
Poletti, Piero;
Béraud, Guillaume;
Boëlle, Pierre-Yves;
Merler, Stefano;
Colizza, Vittoria

Publication type:

Article

The role of the encapsulated cargo in microcompartment assembly.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006351

By:

Mohajerani, Farzaneh;
Hagan, Michael F.

Publication type:

Article