Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 4

Results: 44

Propagating annotations of molecular networks using in silico fragmentation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006089

By:

Wang, Mingxun;
Nothias, Louis-Félix;
Caraballo-Rodríguez, Andrés Mauricio;
Dorrestein, Pieter C.;
da Silva, Ricardo R.;
van der Hooft, Justin J. J.;
Lopes, Norberto Peporine;
Fox, Evan;
Klassen, Jonathan L.;
Balunas, Marcy J.

Publication type:

Article

Bayesian reconstruction of transmission within outbreaks using genomic variants.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006117

By:

De Maio, Nicola;
Stoesser, Nicole;
Wilson, Daniel J.;
Worby, Colin J.

Publication type:

Article

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006099

By:

Hannigan, Geoffrey D.;
Schloss, Patrick D.;
Duhaime, Melissa B.;
Koutra, Danai

Publication type:

Article

A computational model of shared fine-scale structure in the human connectome.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006120

By:

Guntupalli, J. Swaroop;
Feilong, Ma;
Haxby, James V.

Publication type:

Article

On the role of extrinsic noise in microRNA-mediated bimodal gene expression.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006063

By:

Del Giudice, Marco;
Bo, Stefano;
Grigolon, Silvia;
Bosia, Carla

Publication type:

Article

Origins of scale invariance in vocalization sequences and speech.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005996

By:

Khatami, Fatemeh;
Wöhr, Markus;
Read, Heather L.;
Escabí, Monty A.

Publication type:

Article

Multiscale modelization in a small virus: Mechanism of proton channeling and its role in triggering capsid disassembly.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006082

By:

Viso, Juan Francisco;
Belelli, Patricia;
Machado, Matías;
González, Humberto;
Pantano, Sergio;
Amundarain, María Julia;
Zamarreño, Fernando;
Branda, Maria Marta;
Guérin, Diego M. A.;
Costabel, Marcelo D.

Publication type:

Article

Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006094

By:

Martínez-García, Ricardo;
Nadell, Carey D.;
Hartmann, Raimo;
Drescher, Knut;
Bonachela, Juan A.

Publication type:

Article

Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006103

By:

Davidson, Russell B.;
Hendrix, Josie;
Geiss, Brian J.;
McCullagh, Martin

Publication type:

Article

Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006101

By:

Kaiser, Florian;
Bittrich, Sebastian;
Salentin, Sebastian;
Leberecht, Christoph;
Haupt, V. Joachim;
Krautwurst, Sarah;
Schroeder, Michael;
Labudde, Dirk

Publication type:

Article

A modelling approach for exploring muscle dynamics during cyclic contractions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006123

By:

Ross, Stephanie A.;
Nigam, Nilima;
Wakeling, James M.

Publication type:

Article

Whole-body iron transport and metabolism: Mechanistic, multi-scale model to improve treatment of anemia in chronic kidney disease.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006060

By:

Sarkar, Joydeep;
Potdar, Alka A.;
Saidel, Gerald M.

Publication type:

Article

A computational study of astrocytic glutamate influence on post-synaptic neuronal excitability.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006040

By:

Flanagan, Bronac;
McDaid, Liam;
Wade, John;
Wong-Lin, KongFatt;
Harkin, Jim

Publication type:

Article

Using pseudoalignment and base quality to accurately quantify microbial community composition.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006096

By:

Reppell, Mark;
Novembre, John

Publication type:

Article

Biobeam—Multiplexed wave-optical simulations of light-sheet microscopy.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006079

By:

Weigert, Martin;
Subramanian, Kaushikaram;
Bundschuh, Sebastian T.;
Myers, Eugene W.;
Kreysing, Moritz

Publication type:

Article

Physics-based simulations of aerial attacks by peregrine falcons reveal that stooping at high speed maximizes catch success against agile prey.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006044

By:

Mills, Robin;
Hildenbrandt, Hanno;
Taylor, Graham K.;
Hemelrijk, Charlotte K.

Publication type:

Article

Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006067

By:

Rimbaud, Loup;
Papaïx, Julien;
Rey, Jean-François;
Barrett, Luke G.;
Thrall, Peter H.

Publication type:

Article

Eleven quick tips for finding research data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006038

By:

Gregory, Kathleen;
Khalsa, Siri Jodha;
Michener, William K.;
Psomopoulos, Fotis E.;
de Waard, Anita;
Wu, Mingfang

Publication type:

Article

Principles that govern competition or co-existence in Rho-GTPase driven polarization.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006095

By:

Chiou, Jian-Geng;
Ramirez, Samuel A.;
Elston, Timothy C.;
Witelski, Thomas P.;
Schaeffer, David G.;
Lew, Daniel J.

Publication type:

Article

Ten simple rules for responsible referencing.

Published in:

2018

By:

Penders, Bart

Publication type:

Editorial

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006076

By:

Ching, Travers;
Zhu, Xun;
Garmire, Lana X.

Publication type:

Article

Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006075

By:

Giese, Wolfgang;
Milicic, Gregor;
Schröder, Andreas;
Klipp, Edda

Publication type:

Article

A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006053

By:

Zhang, Huanan;
Lee, Catherine A. A.;
Li, Zhuliu;
Garbe, John R.;
Eide, Cindy R.;
Petegrosso, Raphael;
Kuang, Rui;
Tolar, Jakub

Publication type:

Article

Toward a theory of coactivation patterns in excitable neural networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006084

By:

Messé, Arnaud;
Hütt, Marc-Thorsten;
Hilgetag, Claus C.

Publication type:

Article

Interactions of spatial strategies producing generalization gradient and blocking: A computational approach.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006092

By:

Dollé, Laurent;
Chavarriaga, Ricardo;
Guillot, Agnès;
Khamassi, Mehdi

Publication type:

Article

Need for speed: An optimized gridding approach for spatially explicit disease simulations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006086

By:

Sellman, Stefan;
Tsao, Kimberly;
Tildesley, Michael J.;
Brommesson, Peter;
Webb, Colleen T.;
Wennergren, Uno;
Keeling, Matt J.;
Lindström, Tom

Publication type:

Article

New computational approaches to understanding molecular protein function.

Published in:

2018

By:

Fetrow, Jacquelyn S.;
Babbitt, Patricia C.

Publication type:

Editorial

Automated plant species identification—Trends and future directions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005993

By:

Wäldchen, Jana;
Rzanny, Michael;
Seeland, Marco;
Mäder, Patrick

Publication type:

Article

Ten quick tips for teaching programming.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006023

By:

Brown, Neil C. C.;
Wilson, Greg

Publication type:

Article

Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006065

By:

Fujita, Hironori;
Kawaguchi, Masayoshi

Publication type:

Article

Effect of Ca<sup>2+</sup> on the promiscuous target-protein binding of calmodulin.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006072

By:

Westerlund, Annie M.;
Delemotte, Lucie

Publication type:

Article

A probabilistic, distributed, recursive mechanism for decision-making in the brain.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006033

By:

Caballero, Javier A.;
Humphries, Mark D.;
Gurney, Kevin N.

Publication type:

Article

Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006055

By:

Zarai, Yoram;
Tuller, Tamir

Publication type:

Article

Material and shape perception based on two types of intensity gradient information.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006061

By:

Sawayama, Masataka;
Nishida, Shin'ya

Publication type:

Article

Effects of growth rate, cell size, motion, and elemental stoichiometry on nutrient transport kinetics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006118

By:

Flynn, Kevin J.;
Skibinski, David O. F.;
Lindemann, Christian

Publication type:

Article

Effects of spatiotemporal HSV-2 lesion dynamics and antiviral treatment on the risk of HIV-1 acquisition.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006129

By:

Byrne, Catherine M.;
Gantt, Soren;
Coombs, Daniel

Publication type:

Article

Mechanical unfolding reveals stable 3-helix intermediates in talin and α-catenin.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006126

By:

Mykuliak, Vasyl V.;
Haining, Alexander William M.;
von Essen, Magdaléna;
del Río Hernández, Armando;
Hytönen, Vesa P.

Publication type:

Article

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006112

By:

Adolf-Bryfogle, Jared;
Kalyuzhniy, Oleks;
Kubitz, Michael;
Weitzner, Brian D.;
Hu, Xiaozhen;
Adachi, Yumiko;
Schief, William R.;
Jr.Dunbrack, Roland L.

Publication type:

Article

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006106

By:

Kim, Ji-Sung;
Gao, Xin;
Rzhetsky, Andrey

Publication type:

Article

Personalizing physical exercise in a computational model of fuel homeostasis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006073

By:

Palumbo, Maria Concetta;
Morettini, Micaela;
Tieri, Paolo;
Diele, Fasma;
Sacchetti, Massimo;
Castiglione, Filippo

Publication type:

Article

Rational metareasoning and the plasticity of cognitive control.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006043

By:

Lieder, Falk;
Shenhav, Amitai;
Musslick, Sebastian;
Griffiths, Thomas L.

Publication type:

Article

Organization of the core respiratory network: Insights from optogenetic and modeling studies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006148

By:

Ausborn, Jessica;
Koizumi, Hidehiko;
Barnett, William H.;
John, Tibin T.;
Zhang, Ruli;
Molkov, Yaroslav I.;
Smith, Jeffrey C.;
Rybak, Ilya A.

Publication type:

Article

Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006091

By:

Buckley, Reuben M.;
Kortschak, R. Daniel;
Adelson, David L.

Publication type:

Article

Exploiting glycan topography for computational design of Env glycoprotein antigenicity.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006093

By:

Yu, Wen-Han;
Zhao, Peng;
Draghi, Monia;
Arevalo, Claudia;
Karsten, Christina B.;
Suscovich, Todd J.;
Gunn, Bronwyn;
Streeck, Hendrik;
Brass, Abraham L.;
Tiemeyer, Michael;
Seaman, Michael;
Mascola, John R.;
Wells, Lance;
Lauffenburger, Douglas A.;
Alter, Galit

Publication type:

Article