Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 3

Results: 73

Decision making improves sperm chemotaxis in the presence of noise.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006109

By:

Kromer, Justus A.;
Märcker, Steffen;
Lange, Steffen;
Baier, Christel;
Friedrich, Benjamin M.

Publication type:

Article

EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006128

By:

Schott, Benjamin;
Traub, Manuel;
Schlagenhauf, Cornelia;
Takamiya, Masanari;
Antritter, Thomas;
Bartschat, Andreas;
Löffler, Katharina;
Blessing, Denis;
Otte, Jens C.;
Kobitski, Andrei Y.;
Nienhaus, G. Ulrich;
Strähle, Uwe;
Mikut, Ralf;
Stegmaier, Johannes

Publication type:

Article

Optimal dynamic control approach in a multi-objective therapeutic scenario: Application to drug delivery in the treatment of prostate cancer.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006087

By:

Irurzun-Arana, Itziar;
Janda, Alvaro;
Ardanza-Trevijano, Sergio;
Trocóniz, Iñaki F.

Publication type:

Article

Compositional clustering in task structure learning.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006116

By:

Franklin, Nicholas T.;
Frank, Michael J.

Publication type:

Article

An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006054

By:

Prada, Juan;
Sasi, Manju;
Martin, Corinna;
Jablonka, Sibylle;
Dandekar, Thomas;
Blum, Robert

Publication type:

Article

Eleven quick tips for architecting biomedical informatics workflows with cloud computing.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005994

By:

Cole, Brian S.;
Moore, Jason H.

Publication type:

Article

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006078

By:

Dotu, Ivan;
Adamson, Scott I.;
Coleman, Benjamin;
Fournier, Cyril;
Ricart-Altimiras, Emma;
Eyras, Eduardo;
Chuang, Jeffrey H.

Publication type:

Article

Eleven quick tips for running an interdisciplinary short course for new graduate students.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006039

By:

Saunders, Timothy E.;
He, Cynthia Y.;
Koehl, Patrice;
Ong, L. L. Sharon;
So, Peter T. C.

Publication type:

Article

Astrocytic Kir4.1 channels and gap junctions account for spontaneous epileptic seizure.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005877

By:

Du, Mengmeng;
Li, Jiajia;
Chen, Liang;
Yu, Yuguo;
Wu, Ying

Publication type:

Article

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006080

By:

Samadian, Soroush;
Bruce, Jeff P.;
Pugh, Trevor J.

Publication type:

Article

Modeling the dynamics of oligodendrocyte precursor cells and the genesis of gliomas.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005977

By:

Dufour, Aloys;
Gontran, Emilie;
Deroulers, Christophe;
Varlet, Pascale;
Pallud, Johan;
Grammaticos, Basile;
Badoual, Mathilde

Publication type:

Article

Dynamic combination of sensory and reward information under time pressure.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006070

By:

Farashahi, Shiva;
Ting, Chih-Chung;
Kao, Chang-Hao;
Wu, Shih-Wei;
Soltani, Alireza

Publication type:

Article

Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006032

By:

Vaxenburg, Roman;
Wyche, Isis;
Svoboda, Karel;
Efros, Alexander L.;
Hires, Samuel Andrew

Publication type:

Article

From correlation to causation: Estimating effective connectivity from zero-lag covariances of brain signals.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006056

By:

Schiefer, Jonathan;
Niederbühl, Alexander;
Pernice, Volker;
Lennartz, Carolin;
Hennig, Jürgen;
LeVan, Pierre;
Rotter, Stefan

Publication type:

Article

Scabies in residential care homes: Modelling, inference and interventions for well-connected population sub-units.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006046

By:

Kinyanjui, Timothy;
Middleton, Jo;
Güttel, Stefan;
Cassell, Jackie;
Ross, Joshua;
House, Thomas

Publication type:

Article

Correction: MAGPIE: Simplifying access and execution of computational models in the life sciences.

Published in:

2018

By:

null, null

Publication type:

Correction Notice

A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005985

By:

Bouhaddou, Mehdi;
Barrette, Anne Marie;
Stern, Alan D.;
Koch, Rick J.;
DiStefano, Matthew S.;
Riesel, Eric A.;
Santos, Luis C.;
Tan, Annie L.;
Mertz, Alex E.;
Birtwistle, Marc R.

Publication type:

Article

Fluctuating Finite Element Analysis (FFEA): A continuum mechanics software tool for mesoscale simulation of biomolecules.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005897

By:

Solernou, Albert;
Hanson, Benjamin S.;
Richardson, Robin A.;
Welch, Robert;
Read, Daniel J.;
Harlen, Oliver G.;
Harris, Sarah A.

Publication type:

Article

Population dynamics of engineered underdominance and killer-rescue gene drives in the control of disease vectors.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006059

By:

Edgington, Matthew P.;
Alphey, Luke S.

Publication type:

Article

Model-based analysis of competing-endogenous pathways (MACPath) in human cancers.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006074

By:

Park, Hyun Jung;
Kim, Soyeon;
Li, Wei

Publication type:

Article

Brain-state invariant thalamo-cortical coordination revealed by non-linear encoders.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006041

By:

Viejo, Guillaume;
Cortier, Thomas;
Peyrache, Adrien

Publication type:

Article

Haptic communication between humans is tuned by the hard or soft mechanics of interaction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005971

By:

Takagi, Atsushi;
Usai, Francesco;
Ganesh, Gowrishankar;
Sanguineti, Vittorio;
Burdet, Etienne

Publication type:

Article

Activation gating in HCN2 channels.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006045

By:

Hummert, Sabine;
Thon, Susanne;
Eick, Thomas;
Schmauder, Ralf;
Schulz, Eckhard;
Benndorf, Klaus

Publication type:

Article

Integrative single-cell omics analyses reveal epigenetic heterogeneity in mouse embryonic stem cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006034

By:

Luo, Yanting;
He, Jianlin;
Xu, Xiguang;
Sun, Ming-an;
Wu, Xiaowei;
Lu, Xuemei;
Xie, Hehuang

Publication type:

Article

Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006069

By:

Sambaturu, Narmada;
Mukherjee, Sumanta;
López-García, Martín;
Molina-París, Carmen;
Menon, Gautam I.;
Chandra, Nagasuma

Publication type:

Article

The Pathway Coexpression Network: Revealing pathway relationships.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006042

By:

Pita-Juarez, Yered;
Altschuler, Gabriel;
Kariotis, Sokratis;
Wei, Wenbin;
Koler, Katjusa;
Green, Claire;
Tanzi, Rudolph;
Hide, Winston

Publication type:

Article

The exclusive effects of chaperonin on the behavior of proteins with 5<sub>2</sub> knot.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005970

By:

Zhao, Yani;
Dabrowski-Tumanski, Pawel;
Niewieczerzal, Szymon;
Sulkowska, Joanna I.

Publication type:

Article

A FAIR guide for data providers to maximise sharing of human genomic data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005873

By:

Corpas, Manuel;
Kovalevskaya, Nadezda V.;
McMurray, Amanda;
Nielsen, Fiona G. G.

Publication type:

Article

Meet-U: Educating through research immersion.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005992

By:

Abdollahi, Nika;
Albani, Alexandre;
Anthony, Eric;
Baud, Agnes;
Cardon, Mélissa;
Clerc, Robert;
Czernecki, Dariusz;
Conte, Romain;
David, Laurent;
Delaune, Agathe;
Djerroud, Samia;
Fourgoux, Pauline;
Guiglielmoni, Nadège;
Laurentie, Jeanne;
Lehmann, Nathalie;
Lochard, Camille;
Montagne, Rémi;
Myrodia, Vasiliki;
Opuu, Vaitea;
Parey, Elise

Publication type:

Article

PLOS Computational Biology 2017 Reviewer and Editorial Board Thank You.

Published in:: PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006066
Publication type:: Article

Epigenetic regulation of cell fate reprogramming in aging and disease: A predictive computational model.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006052

By:

Folguera-Blasco, Núria;
Cuyàs, Elisabet;
Menéndez, Javier A.;
Alarcón, Tomás

Publication type:

Article

Imbalanced amplification: A mechanism of amplification and suppression from local imbalance of excitation and inhibition in cortical circuits.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006048

By:

Ebsch, Christopher;
Rosenbaum, Robert

Publication type:

Article

iDREM: Interactive visualization of dynamic regulatory networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006019

By:

Ding, Jun;
Hagood, James S.;
Ambalavanan, Namasivayam;
Kaminski, Naftali;
Bar-Joseph, Ziv

Publication type:

Article

LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006058

By:

Chen, Jinbo;
Scholz, Uwe;
Zhou, Ruonan;
Lange, Matthias

Publication type:

Article

In silico study of multicellular automaticity of heterogeneous cardiac cell monolayers: Effects of automaticity strength and structural linear anisotropy.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005978

By:

Duverger, James Elber;
Jacquemet, Vincent;
Vinet, Alain;
Comtois, Philippe

Publication type:

Article

Across-subjects classification of stimulus modality from human MEG high frequency activity.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005938

By:

Westner, Britta U.;
Dalal, Sarang S.;
Hanslmayr, Simon;
Staudigl, Tobias

Publication type:

Article

Particle-based simulations of polarity establishment reveal stochastic promotion of turing pattern formation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006016

By:

Pablo, Michael;
Ramirez, Samuel A.;
Elston, Timothy C.

Publication type:

Article

Closely related, yet unique: Distinct homo- and heterodimerization patterns of G protein coupled chemokine receptors and their fine-tuning by cholesterol.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006062

By:

Gahbauer, Stefan;
Pluhackova, Kristyna;
Böckmann, Rainer A.

Publication type:

Article

Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006051

By:

Ge, Hao;
Wu, Pingping;
Qian, Hong;
Xie, Sunney Xiaoliang

Publication type:

Article

Gap junction plasticity as a mechanism to regulate network-wide oscillations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006025

By:

Pernelle, Guillaume;
Nicola, Wilten;
Clopath, Claudia

Publication type:

Article

4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006030

By:

Irastorza-Azcarate, Ibai;
Acemel, Rafael D.;
Tena, Juan J.;
Maeso, Ignacio;
Gómez-Skarmeta, José Luis;
Devos, Damien P.

Publication type:

Article

The importance of geometry in the corneal micropocket angiogenesis assay.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006049

By:

Grogan, James A.;
Connor, Anthony J.;
Pitt-Francis, Joe M.;
Maini, Philip K.;
Byrne, Helen M.

Publication type:

Article

Neuronal gain modulability is determined by dendritic morphology: A computational optogenetic study.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006027

By:

Jarvis, Sarah;
Nikolic, Konstantin;
Schultz, Simon R.

Publication type:

Article

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006002

By:

Barton, Carl;
Morganella, Sandro;
Ødegård-Fougner, Øyvind;
Alexander, Stephanie;
Ries, Jonas;
Fitzgerald, Tomas;
Ellenberg, Jan;
Birney, Ewan

Publication type:

Article

Use of temperature to improve West Nile virus forecasts.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006047

By:

DeFelice, Nicholas B.;
Schneider, Zachary D.;
Little, Eliza;
Barker, Christopher;
Caillouet, Kevin A.;
Campbell, Scott R.;
Damian, Dan;
Irwin, Patrick;
Jones, Herff M. P.;
Townsend, John;
Shaman, Jeffrey

Publication type:

Article

Ten simple rules to create a serious game, illustrated with examples from structural biology.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005955

By:

Baaden, Marc;
Delalande, Olivier;
Ferey, Nicolas;
Pasquali, Samuela;
Waldispühl, Jérôme;
Taly, Antoine

Publication type:

Article

Bat detective—Deep learning tools for bat acoustic signal detection.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005995

By:

Mac Aodha, Oisin;
Gibb, Rory;
Barlow, Kate E.;
Browning, Ella;
Firman, Michael;
Freeman, Robin;
Harder, Briana;
Kinsey, Libby;
Mead, Gary R.;
Newson, Stuart E.;
Pandourski, Ivan;
Parsons, Stuart;
Russ, Jon;
Szodoray-Paradi, Abigel;
Szodoray-Paradi, Farkas;
Tilova, Elena;
Girolami, Mark;
Brostow, Gabriel;
Jones, Kate E.

Publication type:

Article

Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006022

By:

Holland, David O.;
Johnson, Margaret E.

Publication type:

Article

Method for the simulation of blood platelet shape and its evolution during activation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005899

By:

Moskalensky, Alexander E.;
Yurkin, Maxim A.;
Muliukov, Artem R.;
Litvinenko, Alena L.;
Nekrasov, Vyacheslav M.;
Chernyshev, Andrei V.;
Maltsev, Valeri P.

Publication type:

Article

Correction: Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue.

Published in:

2018

By:

null, null

Publication type:

Correction Notice