Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 12

Results: 52

Ten quick tips for sharing open genomic data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006472

By:

Brown, Anne V.;
Campbell, Jacqueline D.;
Assefa, Teshale;
Grant, David;
Nelson, Rex T.;
Weeks, Nathan T.;
Cannon, Steven B.

Publication type:

Article

Active degradation of MarA controls coordination of its downstream targets.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006634

By:

Rossi, Nicholas A.;
Mora, Thierry;
Walczak, Aleksandra M.;
Dunlop, Mary J.

Publication type:

Article

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006342

By:

Jumper, John M.;
Faruk, Nabil F.;
Freed, Karl F.;
Sosnick, Tobin R.

Publication type:

Article

Chirality provides a direct fitness advantage and facilitates intermixing in cellular aggregates.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006645

By:

B. George, Ashish;
Korolev, Kirill S.

Publication type:

Article

Exploring chromatin hierarchical organization via Markov State Modelling.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006686

By:

Tan, Zhen Wah;
Guarnera, Enrico;
Berezovsky, Igor N.

Publication type:

Article

Statistical investigations of protein residue direct couplings.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006237

By:

Neuwald, Andrew F.;
Altschul, Stephen F.

Publication type:

Article

Chemogenomic model identifies synergistic drug combinations robust to the pathogen microenvironment.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006677

By:

Cokol, Murat;
Li, Chen;
Chandrasekaran, Sriram

Publication type:

Article

Change, stability, and instability in the Pavlovian guidance of behaviour from adolescence to young adulthood.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006679

By:

Moutoussis, Michael;
Bullmore, Edward T.;
Goodyer, Ian M.;
Fonagy, Peter;
Jones, Peter B.;
Dolan, Raymond J.;
Dayan, Peter;
null, null

Publication type:

Article

Scene complexity modulates degree of feedback activity during object detection in natural scenes.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006690

By:

Groen, Iris I. A.;
Jahfari, Sara;
Seijdel, Noor;
Ghebreab, Sennay;
Lamme, Victor A. F.;
Scholte, H. Steven

Publication type:

Article

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006578

By:

Jumper, John M.;
Faruk, Nabil F.;
Freed, Karl F.;
Sosnick, Tobin R.

Publication type:

Article

On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006610

By:

Lee, Brian C.;
Tward, Daniel J.;
Mitra, Partha P.;
Miller, Michael I.

Publication type:

Article

A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006673

By:

Lu, Jia;
Cao, Xiaoyi;
Zhong, Sheng

Publication type:

Article

Hosts mobility and spatial spread of Rickettsia rickettsii.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006636

By:

Polo, Gina;
Mera Acosta, Carlos;
Labruna, Marcelo B.;
Ferreira, Fernando;
Brockmann, Dirk

Publication type:

Article

Harnessing formal concepts of biological mechanism to analyze human disease.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006540

By:

Darden, Lindley;
Kundu, Kunal;
Pal, Lipika R.;
Moult, John

Publication type:

Article

Conventional analysis of trial-by-trial adaptation is biased: Empirical and theoretical support using a Bayesian estimator.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006501

By:

Blustein, Daniel;
Shehata, Ahmed;
Englehart, Kevin;
Sensinger, Jonathon

Publication type:

Article

Determinants of drug-target interactions at the single cell level.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006601

By:

Elgart, Vlad;
Lin, Jia-Ren;
Loscalzo, Joseph

Publication type:

Article

One thousand simple rules.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006670

By:

Bourne, Philip E.;
Lewitter, Fran;
Markel, Scott;
Papin, Jason A.

Publication type:

Article

Movement and conformity interact to establish local behavioural traditions in animal populations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006647

By:

Somveille, Marius;
Firth, Josh A.;
Aplin, Lucy M.;
Farine, Damien R.;
Sheldon, Ben C.;
Thompson, Robin N.

Publication type:

Article

Ten simple rules for documenting scientific software.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006561

By:

Lee, Benjamin D.

Publication type:

Article

Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006637

By:

Vandersickel, Nele;
Watanabe, Masaya;
Tao, Qian;
Fostier, Jan;
Zeppenfeld, Katja;
Panfilov, Alexander V.

Publication type:

Article

Local epigenomic state cannot discriminate interacting and non-interacting enhancer–promoter pairs with high accuracy.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006625

By:

Xi, Wang;
Beer, Michael A.

Publication type:

Article

Bayesian inference of protein conformational ensembles from limited structural data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006641

By:

Potrzebowski, Wojciech;
Trewhella, Jill;
Andre, Ingemar

Publication type:

Article

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006554

By:

Cori, Anne;
Nouvellet, Pierre;
Garske, Tini;
Bourhy, Hervé;
Nakouné, Emmanuel;
Jombart, Thibaut

Publication type:

Article

Multiscale computational model of Achilles tendon wound healing: Untangling the effects of repair and loading.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006652

By:

Chen, Kellen;
Hu, Xiao;
Blemker, Silvia S.;
Holmes, Jeffrey W.

Publication type:

Article

Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006258

By:

Moradigaravand, Danesh;
Parts, Leopold;
Palm, Martin;
Farewell, Anne;
Warringer, Jonas;
Mustonen, Ville

Publication type:

Article

Eleven quick tips to build a usable REST API for life sciences.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006542

By:

Tarkowska, Aleksandra;
Cook, Charles E.;
Turner, Edd;
Finn, Robert D.;
Yates, Andrew D.;
Carvalho-Silva, Denise

Publication type:

Article

G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006675

By:

Lavezzo, Enrico;
Berselli, Michele;
Frasson, Ilaria;
Perrone, Rosalba;
Palù, Giorgio;
Richter, Sara N.;
Toppo, Stefano;
Brazzale, Alessandra R.

Publication type:

Article

Coherent chaos in a recurrent neural network with structured connectivity.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006309

By:

Landau, Itamar Daniel;
Sompolinsky, Haim

Publication type:

Article

Full-Length Envelope Analyzer (): A tool for longitudinal analysis of viral amplicons.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006498

By:

Eren, Kemal;
Weaver, Steven;
Kosakovsky Pond, Sergei L.;
Ketteringham, Robert;
Valentyn, Morné;
Laird Smith, Melissa;
Kumar, Venkatesh;
Mohan, Sanjay;
Murrell, Ben

Publication type:

Article

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006616

By:

Zhang, Wen;
Tang, Guifeng;
Huang, Feng;
Zhang, Xining;
Yue, Xiang;
Wu, Wenjian

Publication type:

Article

PremPDI estimates and interprets the effects of missense mutations on protein-DNA interactions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006615

By:

Zhang, Ning;
Chen, Yuting;
Zhao, Feiyang;
Yang, Qing;
Li, Minghui;
Simonetti, Franco L.

Publication type:

Article

Enzymatic and non-enzymatic pathways of kynurenines' dimerization: the molecular factors for oxidative stress development.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006672

By:

Zhuravlev, Aleksandr V.;
Savvateeva-Popova, Elena V.;
Vetrovoy, Oleg V.

Publication type:

Article

Identifying (un)controllable dynamical behavior in complex networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006630

By:

Rozum, Jordan C.;
Albert, Réka

Publication type:

Article

Odorant mixtures elicit less variable and faster responses than pure odorants.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006536

By:

Chan, Ho Ka;
Nowotny, Thomas;
Hersperger, Fabian;
Szyszka, Paul;
Marachlian, Emiliano;
Locatelli, Fernando;
Smith, Brian H.

Publication type:

Article

Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006607

By:

Tokuda, Isao T.;
Ono, Daisuke;
Honma, Sato;
Honma, Ken-Ichi;
Herzel, Hanspeter

Publication type:

Article

Projecting social contact matrices to different demographic structures.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006638

By:

Arregui, Sergio;
Aleta, Alberto;
Moreno, Yamir;
Sanz, Joaquín

Publication type:

Article

Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006584

By:

Shan, Mengrou;
Dai, David;
Vudem, Arunodai;
Varner, Jeffrey D.;
Stroock, Abraham D.

Publication type:

Article

PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006614

By:

Wilson, Jennifer L.;
Liu, Tianyun;
Altman, Russ;
Racz, Rebecca;
Adeniyi, Oluseyi;
Sun, Jielin;
Ramamoorthy, Anuradha;
Pacanowski, Michael

Publication type:

Article

Predicting protein targets for drug-like compounds using transcriptomics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006651

By:

Pabon, Nicolas A.;
Camacho, Carlos J.;
Xia, Yan;
Bar-Joseph, Ziv;
Estabrooks, Samuel K.;
Brodsky, Jeffrey L.;
Ye, Zhaofeng;
Herbrand, Amanda K.;
Süß, Evelyn;
Biondi, Ricardo M.;
Assimon, Victoria A.;
Gestwicki, Jason E.

Publication type:

Article

Deep convolutional networks do not classify based on global object shape.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006613

By:

Baker, Nicholas;
Lu, Hongjing;
Kellman, Philip J.;
Erlikhman, Gennady

Publication type:

Article

Bayesian adaptive dual control of deep brain stimulation in a computational model of Parkinson’s disease.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006606

By:

Grado, Logan L.;
Johnson, Matthew D.;
Netoff, Theoden I.

Publication type:

Article

Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006642

By:

Bochicchio, Anna;
Carloni, Paolo;
Krepl, Miroslav;
Sponer, Jiri;
Yang, Fan;
Varani, Gabriele

Publication type:

Article

Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006612

By:

Remme, Michiel W. H.;
Schreiber, Susanne;
Rinzel, John

Publication type:

Article

Insights on the impact of mitochondrial organisation on bioenergetics in high-resolution computational models of cardiac cell architecture.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006640

By:

Ghosh, Shouryadipta;
Tran, Kenneth;
Delbridge, Lea M. D.;
Hickey, Anthony J. R.;
Hanssen, Eric;
Crampin, Edmund J.;
Rajagopal, Vijay

Publication type:

Article

The empirical characteristics of human pattern vision defy theoretically-driven expectations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006585

By:

Neri, Peter

Publication type:

Article

Regulation of harvester ant foraging as a closed-loop excitable system.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006200

By:

Pagliara, Renato;
Gordon, Deborah M.;
Leonard, Naomi Ehrich

Publication type:

Article

Performance of convolutional neural networks for identification of bacteria in 3D microscopy datasets.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006628

By:

Hay, Edouard A.;
Parthasarathy, Raghuveer

Publication type:

Article

Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006617

By:

Liu, Lei;
Shi, Guang;
Thirumalai, D.;
Hyeon, Changbong

Publication type:

Article

Detection and analysis of spatiotemporal patterns in brain activity.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006643

By:

Townsend, Rory G.;
Gong, Pulin

Publication type:

Article

A comprehensive ensemble model for comparing the allosteric effect of ordered and disordered proteins.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006393

By:

Zhang, Luhao;
Li, Maodong;
Liu, Zhirong

Publication type:

Article