Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 11

Results: 51

How pupil responses track value-based decision-making during and after reinforcement learning.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006632

By:

Van Slooten, Joanne C.;
Jahfari, Sara;
Knapen, Tomas;
Theeuwes, Jan

Publication type:

Article

Mechanistic insight into spontaneous transition from cellular alternans to arrhythmia—A simulation study.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006594

By:

Wang, Wei;
Zhang, Shanzhuo;
Ni, Haibo;
Garratt, Clifford J.;
Boyett, Mark R.;
Hancox, Jules C.;
Zhang, Henggui

Publication type:

Article

Tox_(R)CNN: Deep learning-based nuclei profiling tool for drug toxicity screening.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006238

By:

Jimenez-Carretero, Daniel;
Abrishami, Vahid;
Fernández-de-Manuel, Laura;
Palacios, Irene;
Quílez-Álvarez, Antonio;
Díez-Sánchez, Alberto;
del Pozo, Miguel A.;
Montoya, María C.

Publication type:

Article

Deterministic response strategies in a trial-and-error learning task.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006621

By:

Mohr, Holger;
Zwosta, Katharina;
Markovic, Dimitrije;
Bitzer, Sebastian;
Wolfensteller, Uta;
Ruge, Hannes

Publication type:

Article

Strategies and opportunities for promoting bioinformatics in Zimbabwe.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006480

By:

Shoko, Ryman;
Manasa, Justen;
Maphosa, Mcebisi;
Mbanga, Joshua;
Mudziwapasi, Reagan;
Nembaware, Victoria;
Sanyika, Walter T.;
Tinago, Tawanda;
Chikwambi, Zedias;
Mawere, Cephas;
Matimba, Alice;
Mugumbate, Grace;
Mufandaedza, Jonathan;
Mulder, Nicola;
Patterton, Hugh

Publication type:

Article

A Bayesian mixture modelling approach for spatial proteomics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006516

By:

Crook, Oliver M.;
Mulvey, Claire M.;
Kirk, Paul D. W.;
Lilley, Kathryn S.;
Gatto, Laurent

Publication type:

Article

Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006626

By:

Butler, Brandon M.;
Kazan, I. Can;
Kumar, Avishek;
Ozkan, S. Banu

Publication type:

Article

powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006571

By:

Koch, Hillary;
Starenki, Dmytro;
Cooper, Sara J.;
Myers, Richard M.;
Li, Qunhua

Publication type:

Article

Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006569

By:

Meinecke, Lina;
Sharma, Praveer P.;
Du, Huijing;
Zhang, Lei;
Nie, Qing;
Schilling, Thomas F.

Publication type:

Article

RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006514

By:

Li, Jun;
Zhu, Wei;
Wang, Jun;
Li, Wenfei;
Gong, Sheng;
Zhang, Jian;
Wang, Wei

Publication type:

Article

Atlases of cognition with large-scale human brain mapping.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006565

By:

Varoquaux, Gaël;
Schwartz, Yannick;
Poldrack, Russell A.;
Gauthier, Baptiste;
Bzdok, Danilo;
Poline, Jean-Baptiste;
Thirion, Bertrand

Publication type:

Article

Determinants of early afterdepolarization properties in ventricular myocyte models.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006382

By:

Huang, Xiaodong;
Song, Zhen;
Qu, Zhilin

Publication type:

Article

Comprehensive computational modelling of the development of mammalian cortical connectivity underlying an architectonic type principle.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006550

By:

Beul, Sarah F.;
Goulas, Alexandros;
Hilgetag, Claus C.

Publication type:

Article

Binding of the general anesthetic sevoflurane to ion channels.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006605

By:

Stock, Letícia;
Hosoume, Juliana;
Cirqueira, Leonardo;
Treptow, Werner

Publication type:

Article

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006583

By:

Wick, Ryan R.;
Judd, Louise M.;
Holt, Kathryn E.

Publication type:

Article

Adaptive feature detection from differential processing in parallel retinal pathways.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006560

By:

Ozuysal, Yusuf;
Kastner, David B.;
Baccus, Stephen A.

Publication type:

Article

Rosetta FunFolDes – A general framework for the computational design of functional proteins.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006623

By:

Bonet, Jaume;
Wehrle, Sarah;
Schriever, Karen;
Yang, Che;
Billet, Anne;
Sesterhenn, Fabian;
Scheck, Andreas;
Sverrisson, Freyr;
Veselkova, Barbora;
Vollers, Sabrina;
Lourman, Roxanne;
Villard, Mélanie;
Rosset, Stéphane;
Krey, Thomas;
Correia, Bruno E.

Publication type:

Article

Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006549

By:

Hartung, Grant;
Vesel, Claudia;
Morley, Ryan;
Alaraj, Ali;
Sled, John;
Kleinfeld, David;
Linninger, Andreas

Publication type:

Article

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006556

By:

Xavier, Joana C.;
Patil, Kiran Raosaheb;
Rocha, Isabel

Publication type:

Article

Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006589

By:

Berg, Andrej;
Kukharenko, Oleksandra;
Scheffner, Martin;
Peter, Christine

Publication type:

Article

Patterning the insect eye: From stochastic to deterministic mechanisms.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006363

By:

Ebadi, Haleh;
Perry, Michael;
Short, Keith;
Klemm, Konstantin;
Desplan, Claude;
Stadler, Peter F.;
Mehta, Anita

Publication type:

Article

Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006588

By:

Klughammer, Nils;
Bischof, Johanna;
Schnellbächer, Nikolas D.;
Callegari, Andrea;
Lénárt, Péter;
Schwarz, Ulrich S.

Publication type:

Article

Ten simple rules for collaboratively writing a multi-authored paper.

Published in:

2018

By:

Frassl, Marieke A.;
Hamilton, David P.;
Denfeld, Blaize A.;
de Eyto, Elvira;
Hampton, Stephanie E.;
Keller, Philipp S.;
Sharma, Sapna;
Lewis, Abigail S. L.;
Weyhenmeyer, Gesa A.;
O’Reilly, Catherine M.;
Lofton, Mary E.;
Catalán, Núria

Publication type:

Editorial

Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars.

Published in:

2018

By:

Carvalho-Silva, Denise;
Garcia, Leyla;
Morgan, Sarah L.;
Brooksbank, Cath;
Dunham, Ian

Publication type:

Editorial

Inferring interaction partners from protein sequences using mutual information.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006401

By:

Bitbol, Anne-Florence

Publication type:

Article

Bayesian phylodynamic inference with complex models.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006546

By:

Volz, Erik M.;
Siveroni, Igor

Publication type:

Article

Moth olfactory receptor neurons adjust their encoding efficiency to temporal statistics of pheromone fluctuations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006586

By:

Levakova, Marie;
Kostal, Lubomir;
Monsempès, Christelle;
Jacob, Vincent;
Lucas, Philippe

Publication type:

Article

Comparing Bayesian and non-Bayesian accounts of human confidence reports.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006572

By:

Adler, William T.;
Ma, Wei Ji

Publication type:

Article

A regularity index for dendrites - local statistics of a neuron's input space.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006593

By:

Anton-Sanchez, Laura;
Effenberger, Felix;
Bielza, Concha;
Larrañaga, Pedro;
Cuntz, Hermann

Publication type:

Article

Visual physiology of the layer 4 cortical circuit in silico.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006535

By:

Arkhipov, Anton;
Gouwens, Nathan W.;
Billeh, Yazan N.;
Gratiy, Sergey;
Iyer, Ramakrishnan;
Wei, Ziqiang;
Xu, Zihao;
Abbasi-Asl, Reza;
Berg, Jim;
Buice, Michael;
Cain, Nicholas;
da Costa, Nuno;
de Vries, Saskia;
Denman, Daniel;
Durand, Severine;
Feng, David;
Jarsky, Tim;
Lecoq, Jerome;
Lee, Brian;
Li, Lu

Publication type:

Article

Invasion and effective size of graph-structured populations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006559

By:

Giaimo, Stefano;
Arranz, Jordi;
Traulsen, Arne

Publication type:

Article

Oscillations in working memory and neural binding: A mechanism for multiple memories and their interactions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006517

By:

Pina, Jason E.;
Bodner, Mark;
Ermentrout, Bard

Publication type:

Article

Functional mechanisms underlie the emergence of a diverse range of plasticity phenomena.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006590

By:

Henderson, James A.;
Gong, Pulin

Publication type:

Article

Correction: Assessment of ab initio models of protein complexes by molecular dynamics.

Published in:: 2018
Publication type:: Correction Notice

A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs).

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006483

By:

Ehrt, Christiane;
Brinkjost, Tobias;
Koch, Oliver

Publication type:

Article

Comparative structural dynamic analysis of GTPases.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006364

By:

Li, Hongyang;
Yao, Xin-Qiu;
Grant, Barry J.

Publication type:

Article

Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006457

By:

Zhao, Weilong;
Sher, Xinwei

Publication type:

Article

The Cultural Brain Hypothesis: How culture drives brain expansion, sociality, and life history.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006504

By:

Muthukrishna, Michael;
Doebeli, Michael;
Chudek, Maciej;
Henrich, Joseph

Publication type:

Article

Putting benchmarks in their rightful place: The heart of computational biology.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006494

By:

Peters, Bjoern;
Brenner, Steven E.;
Wang, Edwin;
Slonim, Donna;
Kann, Maricel G.

Publication type:

Article

Modulation of voltage-dependent K<sup>+</sup> conductances in photoreceptors trades off investment in contrast gain for bandwidth.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006566

By:

H. Heras, Francisco J.;
Vähäsöyrinki, Mikko;
Niven, Jeremy E.

Publication type:

Article

A computational analysis of dynamic, multi-organ inflammatory crosstalk induced by endotoxin in mice.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006582

By:

Zamora, Ruben;
Korff, Sebastian;
Mi, Qi;
Barclay, Derek;
Schimunek, Lukas;
Zucca, Riccardo;
Arsiwalla, Xerxes D.;
Simmons, Richard L.;
Verschure, Paul;
Billiar, Timothy R.;
Vodovotz, Yoram

Publication type:

Article

Modulation of voltage-dependent K<sup>+</sup> conductances in photoreceptors trades off investment in contrast gain for bandwidth.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006566

By:

Heras, Francisco J. H.;
Vähäsöyrinki, Mikko;
Niven, Jeremy E.

Publication type:

Article

A computational analysis of dynamic, multiorgan inflammatory crosstalk induced by endotoxin in mice.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006582

By:

Zamora, Ruben;
Korff, Sebastian;
Qi Mi;
Barclay, Derek;
Schimunek, Lukas;
Zucca, Riccardo;
Arsiwalla, Xerxes D.;
Simmons, Richard L.;
Verschure, Paul;
Billiar, Timothy R.;
Vodovotz, Yoram

Publication type:

Article

Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006512

By:

Brandani, Giovanni B.;
Takada, Shoji

Publication type:

Article

Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006526

By:

Vorberg, Susann;
Seemayer, Stefan;
Söding, Johannes

Publication type:

Article

Prediction and classification in equation-free collective motion dynamics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006545

By:

Fujii, Keisuke;
Kawasaki, Takeshi;
Inaba, Yuki;
Kawahara, Yoshinobu

Publication type:

Article

Modeling driver cells in developing neuronal networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006551

By:

Luccioli, Stefano;
Angulo-Garcia, David;
Cossart, Rosa;
Malvache, Arnaud;
Módol, Laura;
Sousa, Vitor Hugo;
Bonifazi, Paolo;
Torcini, Alessandro

Publication type:

Article

Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006503

By:

Golan, Yarden;
Alhadeff, Raphael;
Glaser, Fabian;
Ganoth, Assaf;
Warshel, Arieh;
Assaraf, Yehuda G.

Publication type:

Article

Efficient pedigree recording for fast population genetics simulation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006581

By:

Kelleher, Jerome;
Thornton, Kevin R.;
Ashander, Jaime;
Ralph, Peter L.

Publication type:

Article

Motif-Aware PRALINE: Improving the alignment of motif regions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006547

By:

Dijkstra, Maurits;
Bawono, Punto;
Abeln, Sanne;
Feenstra, K. Anton;
Fokkink, Wan;
Heringa, Jaap

Publication type:

Article