Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 10

Results: 48

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006520

By:

Bismeijer, Tycho;
Canisius, Sander;
Wessels, Lodewyk F. A.

Publication type:

Article

Steered molecular dynamics simulations reveal critical residues for (un)binding of substrates, inhibitors and a product to the malarial M1 aminopeptidase.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006525

By:

Moore, Daniel S.;
Brines, Conor;
Jewhurst, Heather;
Dalton, John P.;
Tikhonova, Irina G.

Publication type:

Article

A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006533

By:

Nöh, Katharina;
Niedenführ, Sebastian;
Beyß, Martin;
Wiechert, Wolfgang

Publication type:

Article

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006532

By:

Simpkins, Scott W.;
Nelson, Justin;
Deshpande, Raamesh;
Li, Sheena C.;
Piotrowski, Jeff S.;
Wilson, Erin H.;
Gebre, Abraham A.;
Safizadeh, Hamid;
Okamoto, Reika;
Yoshimura, Mami;
Costanzo, Michael;
Yashiroda, Yoko;
Ohya, Yoshikazu;
Osada, Hiroyuki;
Yoshida, Minoru;
Boone, Charles;
Myers, Chad L.

Publication type:

Article

Modeling and subtleties of K-Ras and Calmodulin interaction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006552

By:

Garrido, Eduardo;
Lázaro, Juan;
Jaumot, Montserrat;
Agell, Neus;
Rubio-Martinez, Jaime

Publication type:

Article

Suboptimal community growth mediated through metabolite crossfeeding promotes species diversity in the gut microbiota.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006558

By:

Henson, Michael A.;
Phalak, Poonam

Publication type:

Article

Computational discovery of dynamic cell line specific Boolean Networks from multiplex time-course data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006538

By:

Razzaq, Misbah;
Paulevé, Loïc;
Siegel, Anne;
Saez-Rodriguez, Julio;
Bourdon, Jérémie;
Guziolowski, Carito

Publication type:

Article

Structural and dynamic basis of substrate permissiveness in hydroxycinnamoyltransferase (HCT).

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006511

By:

Chiang, Ying-Chih;
Levsh, Olesya;
Lam, Chun Kei;
Weng, Jing-Ke;
Wang, Yi

Publication type:

Article

Representations of regular and irregular shapes by deep Convolutional Neural Networks, monkey inferotemporal neurons and human judgments.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006557

By:

Kalfas, Ioannis;
Vinken, Kasper;
Vogels, Rufin

Publication type:

Article

Modeling sensory-motor decisions in natural behavior.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006518

By:

Zhang, Ruohan;
Zhang, Shun;
Tong, Matthew H.;
Cui, Yuchen;
Rothkopf, Constantin A.;
Ballard, Dana H.;
Hayhoe, Mary M.

Publication type:

Article

Dilution and titration of cell-cycle regulators may control cell size in budding yeast.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006548

By:

Heldt, Frank S.;
Lunstone, Reece;
Tyson, John J.;
Novák, Béla

Publication type:

Article

An agent-based model for drug-radiation interactions in the tumour microenvironment: Hypoxia-activated prodrug SN30000 in multicellular tumour spheroids.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006469

By:

Mao, Xinjian;
McManaway, Sarah;
Jaiswal, Jagdish K.;
Patel, Priyanka B.;
Wilson, William R.;
Hicks, Kevin O.;
Bogle, Gib

Publication type:

Article

Quantum chemistry reveals thermodynamic principles of redox biochemistry.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006471

By:

Jinich, Adrian;
Flamholz, Avi;
Ren, Haniu;
Kim, Sung-Jin;
Sanchez-Lengeling, Benjamin;
Cotton, Charles A. R.;
Noor, Elad;
Aspuru-Guzik, Alán;
Bar-Even, Arren

Publication type:

Article

Predicting how and when hidden neurons skew measured synaptic interactions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006490

By:

Brinkman, Braden A. W.;
Rieke, Fred;
Shea-Brown, Eric;
Buice, Michael A.

Publication type:

Article

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006434

By:

Aun, Erki;
Brauer, Age;
Kisand, Veljo;
Tenson, Tanel;
Remm, Maido

Publication type:

Article

Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006515

By:

Giuliani, Sandra;
Silva, Arthur C.;
Borba, Joyce V. V. B.;
Ramos, Pablo I. P.;
Paveley, Ross A.;
Muratov, Eugene N.;
Andrade, Carolina Horta;
Furnham, Nicholas

Publication type:

Article

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006541

By:

Wang, Hao;
Marcišauskas, Simonas;
Sánchez, Benjamín J.;
Domenzain, Iván;
Hermansson, Daniel;
Agren, Rasmus;
Nielsen, Jens;
Kerkhoven, Eduard J.

Publication type:

Article

Modeling large fluctuations of thousands of clones during hematopoiesis: The role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006489

By:

Xu, Song;
Kim, Sanggu;
Chen, Irvin S. Y.;
Chou, Tom

Publication type:

Article

Virus and CTL dynamics in the extrafollicular and follicular tissue compartments in SIV-infected macaques.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006461

By:

Wodarz, Dominik;
Skinner, Pamela J.;
Levy, David N.;
Connick, Elizabeth

Publication type:

Article

A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006359

By:

Schmidt, Maximilian;
Bakker, Rembrandt;
Shen, Kelly;
Bezgin, Gleb;
Diesmann, Markus;
van Albada, Sacha Jennifer

Publication type:

Article

Predicting B cell receptor substitution profiles using public repertoire data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006388

By:

Dhar, Amrit;
Davidsen, Kristian;
IVMatsen, Frederick A.;
Minin, Vladimir N.

Publication type:

Article

Genomic data integration systematically biases interactome mapping.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006474

By:

Skinnider, Michael A.;
Stacey, R. Greg;
Foster, Leonard J.

Publication type:

Article

Data-driven brain network models differentiate variability across language tasks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006487

By:

Bansal, Kanika;
Medaglia, John D.;
Bassett, Danielle S.;
Vettel, Jean M.;
Muldoon, Sarah F.

Publication type:

Article

Correction: Elucidation of molecular kinetic schemes from macroscopic traces using system identification.

Published in:

2018

By:

Fribourg, Miguel;
Logothetis, Diomedes E.;
González-Maeso, Javier;
Sealfon, Stuart C.;
Galocha-Iragüen, Belén;
Las-Heras Andrés, Fernando;
Brezina, Vladimir

Publication type:

Correction Notice

Internal but not external noise frees working memory resources.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006488

By:

Tomić, Ivan;
Bays, Paul M.

Publication type:

Article

State dependence of stimulus-induced variability tuning in macaque MT.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006527

By:

Lombardo, Joseph A.;
Macellaio, Matthew V.;
Liu, Bing;
Palmer, Stephanie E.;
Osborne, Leslie C.

Publication type:

Article

What to know before forecasting the flu.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005964

By:

Chakraborty, Prithwish;
Lewis, Bryan;
Eubank, Stephen;
Brownstein, John S.;
Marathe, Madhav;
Ramakrishnan, Naren

Publication type:

Article

Ten quick tips for getting the most scientific value out of numerical data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006141

By:

Schwen, Lars Ole;
Rueschenbaum, Sabrina

Publication type:

Article

Self-organized traffic via priority rules in leaf-cutting ants.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006523

By:

Strömbom, Daniel;
Dussutour, Audrey

Publication type:

Article

Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006513

By:

Tran, Huy;
Desponds, Jonathan;
Perez Romero, Carmina Angelica;
Coppey, Mathieu;
Fradin, Cecile;
Dostatni, Nathalie;
Walczak, Aleksandra M.

Publication type:

Article

Seizure pathways: A model-based investigation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006403

By:

Karoly, Philippa J.;
Kuhlmann, Levin;
Soudry, Daniel;
Grayden, David B.;
Cook, Mark J.;
Freestone, Dean R.

Publication type:

Article

Ten simple rules for developing good reading habits during graduate school and beyond.

Published in:

2018

By:

Méndez, Marcos

Publication type:

Editorial

Rotation of sex combs in Drosophila melanogaster requires precise and coordinated spatio-temporal dynamics from forces generated by epithelial cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006455

By:

Ho, Ernest C. Y.;
Malagón, Juan Nicolas;
Ahuja, Abha;
Singh, Rama;
Larsen, Ellen

Publication type:

Article

Modeling effects of voltage dependent properties of the cardiac muscarinic receptor on human sinus node function.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006438

By:

Moss, Robin;
Sachse, Frank B.;
Moreno-Galindo, Eloy G.;
Navarro-Polanco, Ricardo A.;
Tristani-Firouzi, Martin;
Seemann, Gunnar

Publication type:

Article

Interactive reservoir computing for chunking information streams.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006400

By:

Asabuki, Toshitake;
Hiratani, Naoki;
Fukai, Tomoki

Publication type:

Article

In-silico dynamic analysis of cytotoxic drug administration to solid tumours: Effect of binding affinity and vessel permeability.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006460

By:

Vavourakis, Vasileios;
Stylianopoulos, Triantafyllos;
Wijeratne, Peter A.

Publication type:

Article

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006451

By:

Huh, Iksoo;
Mendizabal, Isabel;
Park, Taesung;
Yi, Soojin V.

Publication type:

Article

Noise propagation in an integrated model of bacterial gene expression and growth.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006386

By:

Kleijn, Istvan T.;
Krah, Laurens H. J.;
Hermsen, Rutger

Publication type:

Article

A Kirchhoff-Nernst-Planck framework for modeling large scale extracellular electrodiffusion surrounding morphologically detailed neurons.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006510

By:

Solbrå, Andreas;
Bergersen, Aslak Wigdahl;
van den Brink, Jonas;
Malthe-Sørenssen, Anders;
Einevoll, Gaute T.;
Halnes, Geir

Publication type:

Article

Ten simple rules when considering retirement.

Published in:

2018

By:

Bourne, Philip E.

Publication type:

Editorial

Ten simple rules for scientists: Improving your writing productivity.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006379

By:

Peterson, Todd C.;
Kleppner, Sofie R.;
Botham, Crystal M.

Publication type:

Article

Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006484

By:

Chen, Ling;
Fish, Alexandra E.;
Capra, John A.

Publication type:

Article

Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006468

By:

Erickson, Richard A.;
Fienen, Michael N.;
McCalla, S. Grace;
Weiser, Emily L.;
Bower, Melvin L.;
Knudson, Jonathan M.;
Thain, Greg

Publication type:

Article

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006333

By:

Cai, Francisco Y.;
Fussell, Thomas;
Cobey, Sarah;
Lipsitch, Marc

Publication type:

Article

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006506

By:

Gelfman, Sahar;
Wang, Quanli;
Lu, Yi-Fan;
Hall, Diana;
Bostick, Christopher D.;
Dhindsa, Ryan;
Halvorsen, Matt;
McSweeney, K. Melodi;
Cotterill, Ellese;
Edinburgh, Tom;
Beaumont, Michael A.;
Frankel, Wayne N.;
Petrovski, Slavé;
Allen, Andrew S.;
Boland, Michael J.;
Goldstein, David B.;
Eglen, Stephen J.

Publication type:

Article

Linking signal detection theory and encoding models to reveal independent neural representations from neuroimaging data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006470

By:

Soto, Fabian A.;
Vucovich, Lauren E.;
Ashby, F. Gregory

Publication type:

Article

Cooperation of dual modes of cell motility promotes epithelial stress relaxation to accelerate wound healing.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006502

By:

Staddon, Michael F.;
Bi, Dapeng;
Tabatabai, A. Pasha;
Ajeti, Visar;
Murrell, Michael P.;
Banerjee, Shiladitya

Publication type:

Article

Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006505

By:

Handel, Andreas;
Li, Yan;
McKay, Brian;
Pawelek, Kasia A.;
Zarnitsyna, Veronika;
Antia, Rustom

Publication type:

Article