Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 1

Results: 49

Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005931

By:

Bartoszek, Krzysztof;
Majchrzak, Marta;
Sakowski, Sebastian;
Kubiak-Szeligowska, Anna B.;
Kaj, Ingemar;
Parniewski, Pawel

Publication type:

Article

GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005973

By:

Wei, Runmin;
Wang, Jingye;
Jia, Erik;
Chen, Tianlu;
Ni, Yan;
Jia, Wei

Publication type:

Article

Metabolic plasticity in synthetic lethal mutants: Viability at higher cost.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005949

By:

Massucci, Francesco Alessandro;
Sagués, Francesc;
Serrano, M. Ángeles

Publication type:

Article

SozRank: A new approach for localizing the epileptic seizure onset zone.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005953

By:

Murin, Yonathan;
Kim, Jeremy;
Parvizi, Josef;
Goldsmith, Andrea

Publication type:

Article

Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005930

By:

Martínez-Cañada, Pablo;
Mobarhan, Milad Hobbi;
Halnes, Geir;
Fyhn, Marianne;
Morillas, Christian;
Pelayo, Francisco;
Einevoll, Gaute T.

Publication type:

Article

Identification of allosteric inhibitors of the ecto-5'-nucleotidase (CD73) targeting the dimer interface.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005943

By:

Rahimova, Rahila;
Fontanel, Simon;
Lionne, Corinne;
Jordheim, Lars Peter;
Peyrottes, Suzanne;
Chaloin, Laurent

Publication type:

Article

Reactome graph database: Efficient access to complex pathway data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005968

By:

Fabregat, Antonio;
Korninger, Florian;
Viteri, Guilherme;
Sidiropoulos, Konstantinos;
Marin-Garcia, Pablo;
Ping, Peipei;
Wu, Guanming;
Stein, Lincoln;
D’Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

The extent of ribosome queuing in budding yeast.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005951

By:

Diament, Alon;
Feldman, Anna;
Schochet, Elisheva;
Kupiec, Martin;
Arava, Yoav;
Tuller, Tamir

Publication type:

Article

MUMmer4: A fast and versatile genome alignment system.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005944

By:

Marçais, Guillaume;
Delcher, Arthur L.;
Phillippy, Adam M.;
Coston, Rachel;
Salzberg, Steven L.;
Zimin, Aleksey

Publication type:

Article

What drives the perceptual change resulting from speech motor adaptation? Evaluation of hypotheses in a Bayesian modeling framework.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005942

By:

Patri, Jean-François;
Perrier, Pascal;
Schwartz, Jean-Luc;
Diard, Julien

Publication type:

Article

Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005974

By:

Patel, Jagdish Suresh;
Brown, Celeste J.;
Ytreberg, F. Marty;
Stenkamp, Deborah L.

Publication type:

Article

Sequence determinants of protein phase behavior from a coarse-grained model.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005941

By:

Dignon, Gregory L.;
Zheng, Wenwei;
Kim, Young C.;
Best, Robert B.;
Mittal, Jeetain

Publication type:

Article

Correction: Lack of Ecological and Life History Context Can Create the Illusion of Social Interactions in Dictyostelium discoideum.

Published in:

2018

By:

null, null

Publication type:

Correction Notice

Modeling visual-based pitch, lift and speed control strategies in hoverflies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005894

By:

Goulard, Roman;
Vercher, Jean-Louis;
Viollet, Stéphane

Publication type:

Article

The role of spatial heterogeneity in the evolution of local and global infections of viruses.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005952

By:

Saeki, Koich;
Sasaki, Akira

Publication type:

Article

A mathematical model for IL-6-mediated, stem cell driven tumor growth and targeted treatment.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005920

By:

Nazari, Fereshteh;
Pearson, Alexander T.;
Nör, Jacques Eduardo;
Jackson, Trachette L.

Publication type:

Article

Static length changes of cochlear outer hair cells can tune low-frequency hearing.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005936

By:

Ciganović, Nikola;
Warren, Rebecca L.;
Keçeli, Batu;
Jacob, Stefan;
Fridberger, Anders;
Reichenbach, Tobias

Publication type:

Article

The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005802

By:

Anupama, Jigisha;
Francescatto, Margherita;
Rahman, Farzana;
Fatima, Nazeefa;
DeBlasio, Dan;
Shanmugam, Avinash Kumar;
Satagopam, Venkata;
Santos, Alberto;
Kolekar, Pandurang;
Michaut, Magali;
Guney, Emre

Publication type:

Article

Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005940

By:

Banavar, Samhita P.;
Gomez, Carlos;
Trogdon, Michael;
Petzold, Linda R.;
Yi, Tau-Mu;
Campàs, Otger

Publication type:

Article

A theory of how active behavior stabilises neural activity: Neural gain modulation by closed-loop environmental feedback.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005926

By:

Buckley, Christopher L.;
Toyoizumi, Taro

Publication type:

Article

A dynamical systems approach for estimating phase interactions between rhythms of different frequencies from experimental data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005928

By:

Onojima, Takayuki;
Goto, Takahiro;
Mizuhara, Hiroaki;
Aoyagi, Toshio

Publication type:

Article

Inferring cell state by quantitative motility analysis reveals a dynamic state system and broken detailed balance.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005927

By:

Kimmel, Jacob C.;
Chang, Amy Y.;
Brack, Andrew S.;
Marshall, Wallace F.

Publication type:

Article

The E<sup>2.65</sup>A mutation disrupts dynamic binding poses of SB269652 at the dopamine D2 and D3 receptors.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005948

By:

Verma, Ravi Kumar;
Abramyan, Ara M.;
Michino, Mayako;
Free, R. Benjamin;
Sibley, David R.;
Javitch, Jonathan A.;
Lane, J. Robert;
Shi, Lei

Publication type:

Article

Interrupting behaviour: Minimizing decision costs via temporal commitment and low-level interrupts.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005916

By:

Lloyd, Kevin;
Dayan, Peter

Publication type:

Article

HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005950

By:

Di Minin, Giulio;
Postlmayr, Andreas;
Wutz, Anton

Publication type:

Article

Clustering gene expression time series data using an infinite Gaussian process mixture model.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005896

By:

McDowell, Ian C.;
Manandhar, Dinesh;
Vockley, Christopher M.;
Schmid, Amy K.;
Reddy, Timothy E.;
Engelhardt, Barbara E.

Publication type:

Article

A model for cooperative gating of L-type Ca<sup>2+</sup> channels and its effects on cardiac alternans dynamics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005906

By:

Sato, Daisuke;
Dixon, Rose E.;
Santana, Luis F.;
Navedo, Manuel F.

Publication type:

Article

Interactions between species introduce spurious associations in microbiome studies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005939

By:

Menon, Rajita;
Ramanan, Vivek;
Korolev, Kirill S.

Publication type:

Article

A direct interaction of cholesterol with the dopamine transporter prevents its out-to-inward transition.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005907

By:

Zeppelin, Talia;
Ladefoged, Lucy Kate;
Sinning, Steffen;
Periole, Xavier;
Schiøtt, Birgit

Publication type:

Article

Modeling the assembly order of multimeric heteroprotein complexes.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005937

By:

Peterson, Lenna X.;
Togawa, Yoichiro;
Esquivel-Rodriguez, Juan;
Terashi, Genki;
Christoffer, Charles;
Roy, Amitava;
Shin, Woong-Hee;
Kihara, Daisuke

Publication type:

Article

Identifying human diamine sensors for death related putrescine and cadaverine molecules.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005945

By:

Izquierdo, Cristina;
Gómez-Tamayo, José C.;
Nebel, Jean-Christophe;
Pardo, Leonardo;
Gonzalez, Angel

Publication type:

Article

Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005933

By:

Calovi, Daniel S.;
Litchinko, Alexandra;
Lecheval, Valentin;
Lopez, Ugo;
Pérez Escudero, Alfonso;
Chaté, Hugues;
Sire, Clément;
Theraulaz, Guy

Publication type:

Article

Assessing an effective undergraduate module teaching applied bioinformatics to biology students.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005872

By:

Madlung, Andreas

Publication type:

Article

Bayesian inference of phylogenetic networks from bi-allelic genetic markers.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005932

By:

Zhu, Jiafan;
Wen, Dingqiao;
Yu, Yun;
Meudt, Heidi M.;
Nakhleh, Luay

Publication type:

Article

Modeling the genetic relatedness of Plasmodium falciparum parasites following meiotic recombination and cotransmission.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005923

By:

Wong, Wesley;
Wenger, Edward A.;
Hartl, Daniel L.;
Wirth, Dyann F.

Publication type:

Article

Bowhead: Bayesian modelling of cell velocity during concerted cell migration.

Published in:

2018

By:

Engel, Mathias;
Longden, James;
Ferkinghoff-Borg, Jesper;
Robin, Xavier;
Sağınç, Gaye;
Linding, Rune

Publication type:

Product Review

Cardinal features of involuntary force variability can arise from the closed-loop control of viscoelastic afferented muscles.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005884

By:

Nagamori, Akira;
Laine, Christopher M.;
Valero-Cuevas, Francisco J.

Publication type:

Article

Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005929

By:

Cang, Zixuan;
Mu, Lin;
Wei, Guo-Wei

Publication type:

Article

Robust and efficient coding with grid cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005922

By:

Vágó, Lajos;
Ujfalussy, Balázs B.

Publication type:

Article

Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005895

By:

Abdel-Haleem, Alyaa M.;
Hefzi, Hooman;
Mineta, Katsuhiko;
Gao, Xin;
Gojobori, Takashi;
Palsson, Bernhard O.;
Lewis, Nathan E.;
Jamshidi, Neema

Publication type:

Article

A neural network model for the orbitofrontal cortex and task space acquisition during reinforcement learning.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005925

By:

Zhang, Zhewei;
Cheng, Zhenbo;
Lin, Zhongqiao;
Nie, Chechang;
Yang, Tianming

Publication type:

Article

Ten simple rules for biologists learning to program.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005871

By:

Carey, Maureen A.;
Papin, Jason A.

Publication type:

Article

Ten simple rules for drawing scientific comics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005845

By:

McDermott, Jason E.;
Partridge, Matthew;
Bromberg, Yana

Publication type:

Article

Probing instructions for expression regulation in gene nucleotide compositions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005921

By:

Bessière, Chloé;
Taha, May;
Petitprez, Florent;
Vandel, Jimmy;
Marin, Jean-Michel;
Bréhélin, Laurent;
Lèbre, Sophie;
Lecellier, Charles-Henri

Publication type:

Article

Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005914

By:

Marín de Mas, Igor;
Aguilar, Esther;
Zodda, Erika;
Balcells, Cristina;
Marin, Silvia;
Dallmann, Guido;
Thomson, Timothy M.;
Papp, Balázs;
Cascante, Marta

Publication type:

Article

Improving pairwise comparison of protein sequences with domain co-occurrence.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005889

By:

Menichelli, Christophe;
Gascuel, Olivier;
Bréhélin, Laurent

Publication type:

Article

Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005911

By:

Koplev, Simon;
Lin, Katie;
Dohlman, Anders B.;
Ma’ayan, Avi

Publication type:

Article

Mathematical modeling identifies optimum lapatinib dosing schedules for the treatment of glioblastoma patients.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005924

By:

Stein, Shayna;
Zhao, Rui;
Haeno, Hiroshi;
Vivanco, Igor;
Michor, Franziska

Publication type:

Article

A systematic atlas of chaperome deregulation topologies across the human cancer landscape.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005890

By:

Hadizadeh Esfahani, Ali;
Sverchkova, Angelina;
Saez-Rodriguez, Julio;
Schuppert, Andreas A.;
Brehme, Marc

Publication type:

Article