Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 7

Results: 58

Self-regulation strategy, feedback timing and hemodynamic properties modulate learning in a simulated fMRI neurofeedback environment.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005681

By:

Oblak, Ethan F.;
Lewis-Peacock, Jarrod A.;
Sulzer, James S.

Publication type:

Article

PCSF: An R-package for network-based interpretation of high-throughput data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005694

By:

Akhmedov, Murodzhon;
Kedaigle, Amanda;
Chong, Renan Escalante;
Montemanni, Roberto;
Bertoni, Francesco;
Fraenkel, Ernest;
Kwee, Ivo

Publication type:

Article

Learning and executing goal-directed choices by internally generated sequences in spiking neural circuits.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005669

By:

Palmer, John;
Keane, Adam;
Gong, Pulin

Publication type:

Article

Dissociating error-based and reinforcement-based loss functions during sensorimotor learning.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005623

By:

Cashaback, Joshua G. A.;
McGregor, Heather R.;
Mohatarem, Ayman;
Gribble, Paul L.

Publication type:

Article

Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005176

By:

Omidi, Saeed;
Zavolan, Mihaela;
Pachkov, Mikhail;
Breda, Jeremie;
Berger, Severin;
van Nimwegen, Erik

Publication type:

Article

A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005688

By:

Maclaren, Oliver J.;
Parker, Aimée;
Pin, Carmen;
Carding, Simon R.;
Watson, Alastair J. M.;
Fletcher, Alexander G.;
Byrne, Helen M.;
Maini, Philip K.

Publication type:

Article

Growth of bacteria in 3-d colonies.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005679

By:

Shao, Xinxian;
Mugler, Andrew;
Kim, Justin;
Jeong, Ha Jun;
Levin, Bruce R.;
Nemenman, Ilya

Publication type:

Article

TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005690

By:

Cang, Zixuan;
Wei, Guowei

Publication type:

Article

Upregulation of an inward rectifying K<sup>+</sup> channel can rescue slow Ca<sup>2+</sup> oscillations in K(ATP) channel deficient pancreatic islets.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005686

By:

Yildirim, Vehpi;
Vadrevu, Suryakiran;
Thompson, Benjamin;
Satin, Leslie S.;
Bertram, Richard

Publication type:

Article

mRNA/protein sequence complementarity and its determinants: The impact of affinity scales.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005648

By:

Bartonek, Lukas;
Zagrovic, Bojan

Publication type:

Article

Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005672

By:

Lonardoni, Davide;
Amin, Hayder;
Di Marco, Stefano;
Maccione, Alessandro;
Berdondini, Luca;
Nieus, Thierry

Publication type:

Article

Spatial dynamics and control of a crop pathogen with mixed-mode transmission.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005654

By:

McQuaid, Christopher Finn;
van den Bosch, Frank;
Szyniszewska, Anna;
Alicai, Titus;
Pariyo, Anthony;
Chikoti, Patrick Chiza;
Gilligan, Christopher Aidan

Publication type:

Article

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005513

By:

Ataman, Meric;
Hatzimanikatis, Vassily

Publication type:

Article

Adjudicating between face-coding models with individual-face fMRI responses.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005604

By:

Carlin, Johan D.;
Kriegeskorte, Nikolaus

Publication type:

Article

A mixture of sparse coding models explaining properties of face neurons related to holistic and parts-based processing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005667

By:

Hosoya, Haruo;
Hyvärinen, Aapo

Publication type:

Article

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005647

By:

Yan, Koon-Kiu;
Lou, Shaoke;
Gerstein, Mark

Publication type:

Article

Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005676

By:

Minas, Giorgos;
Rand, David A.

Publication type:

Article

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005444

By:

Ataman, Meric;
Hernandez Gardiol, Daniel F.;
Fengos, Georgios;
Hatzimanikatis, Vassily

Publication type:

Article

OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005659

By:

Eastman, Peter;
Swails, Jason;
Chodera, John D.;
McGibbon, Robert T.;
Zhao, Yutong;
Beauchamp, Kyle A.;
Wang, Lee-Ping;
Simmonett, Andrew C.;
Harrigan, Matthew P.;
Stern, Chaya D.;
Wiewiora, Rafal P.;
Brooks, Bernard R.;
Pande, Vijay S.

Publication type:

Article

Effect of depth information on multiple-object tracking in three dimensions: A probabilistic perspective.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005554

By:

Cooke, James R. H.;
ter Horst, Arjan C.;
van Beers, Robert J.;
Medendorp, W. Pieter

Publication type:

Article

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005665

By:

Serra, François;
Baù, Davide;
Goodstadt, Mike;
Castillo, David;
Filion, Guillaume;
Marti-Renom, Marc A.

Publication type:

Article

β-adrenergic signaling broadly contributes to LTP induction.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005657

By:

Jȩdrzejewska-Szmek, Joanna;
Luczak, Vincent;
Abel, Ted;
Blackwell, Kim T

Publication type:

Article

Reconstructing the regulatory circuit of cell fate determination in yeast mating response.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005671

By:

Shao, Bin;
Yuan, Haiyu;
Zhang, Rongfei;
Wang, Xuan;
Zhang, Shuwen;
Ouyang, Qi;
Hao, Nan;
Luo, Chunxiong

Publication type:

Article

A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005627

By:

Anderson, Warren D.;
DeCicco, Danielle;
Schwaber, James S.;
Vadigepalli, Rajanikanth

Publication type:

Article

Advances in using Internet searches to track dengue.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005607

By:

Yang, Shihao;
Kou, Samuel C.;
Lu, Fred;
Brownstein, John S.;
Brooke, Nicholas;
Santillana, Mauricio

Publication type:

Article

Grandmothering and cognitive resources are required for the emergence of menopause and extensive post-reproductive lifespan.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005631

By:

Aimé, Carla;
André, Jean-Baptiste;
Raymond, Michel

Publication type:

Article

CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005653

By:

Li, Yang;
Jourdain, Alexis A.;
Calvo, Sarah E.;
Liu, Jun S.;
Mootha, Vamsi K.

Publication type:

Article

Stress-induced mutagenesis: Stress diversity facilitates the persistence of mutator genes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005609

By:

Lukačišinová, Marta;
Novak, Sebastian;
Paixão, Tiago

Publication type:

Article

Correction: Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Atomistic fingerprint of hyaluronan–CD44 binding.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005663

By:

Vuorio, Joni;
Vattulainen, Ilpo;
Martinez-Seara, Hector

Publication type:

Article

A new index for characterizing micro-bead motion in a flow induced by ciliary beating: Part II, modeling.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005552

By:

Bottier, Mathieu;
Peña Fernández, Marta;
Pelle, Gabriel;
Isabey, Daniel;
Louis, Bruno;
Grotberg, James B.;
Filoche, Marcel

Publication type:

Article

Cooperative stochastic binding and unbinding explain synaptic size dynamics and statistics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005668

By:

Shomar, Aseel;
Geyrhofer, Lukas;
Ziv, Noam E.;
Brenner, Naama

Publication type:

Article

Correction: Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis.

Published in:

2017

By:

Brouwer, Andrew F.;
Meza, Rafael;
Eisenberg, Marisa C.

Publication type:

Correction Notice

Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005652

By:

Sharp, Connor;
Bray, James;
Housden, Nicholas G.;
Maiden, Martin C. J.;
Kleanthous, Colin

Publication type:

Article

A new index for characterizing micro-bead motion in a flow induced by ciliary beating: Part I, experimental analysis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005605

By:

Bottier, Mathieu;
Blanchon, Sylvain;
Pelle, Gabriel;
Bequignon, Emilie;
Isabey, Daniel;
Coste, André;
Escudier, Estelle;
Grotberg, James B.;
Papon, Jean-François;
Filoche, Marcel;
Louis, Bruno

Publication type:

Article

Deciphering the regulation of P2X4 receptor channel gating by ivermectin using Markov models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005643

By:

Mackay, Laurent;
Zemkova, Hana;
Stojilkovic, Stanko S.;
Sherman, Arthur;
Khadra, Anmar

Publication type:

Article

Blood vessel tortuosity selects against evolution of aggressive tumor cells in confined tissue environments: A modeling approach.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005635

By:

Szabó, András;
Merks, Roeland M. H.

Publication type:

Article

A curated genome-scale metabolic model of Bordetella pertussis metabolism.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005639

By:

Fyson, Nick;
King, Jerry;
Belcher, Thomas;
Preston, Andrew;
Colijn, Caroline

Publication type:

Article

Possible roles of mechanical cell elimination intrinsic to growing tissue from the perspective of tissue growth efficiency and homeostasis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005651

By:

Lee, Sang-Woo;
Morishita, Yoshihiro

Publication type:

Article

Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005658

By:

Gürsoy, Gamze;
Xu, Yun;
Liang, Jie

Publication type:

Article

Inverse stochastic resonance in networks of spiking neurons.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005646

By:

Uzuntarla, Muhammet;
Barreto, Ernest;
Torres, Joaquin J.

Publication type:

Article

Temporal specificity of the initial adaptive response in motor adaptation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005438

By:

Joiner, Wilsaan M.;
Sing, Gary C.;
Smith, Maurice A.

Publication type:

Article

Noise, multisensory integration, and previous response in perceptual disambiguation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005546

By:

Parise, Cesare V.;
Ernst, Marc O.

Publication type:

Article

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005572

By:

Pogorelyy, Mikhail V.;
Elhanati, Yuval;
Marcou, Quentin;
Sycheva, Anastasiia L.;
Komech, Ekaterina A.;
Nazarov, Vadim I.;
Britanova, Olga V.;
Chudakov, Dmitriy M.;
Mamedov, Ilgar Z.;
Lebedev, Yury B.;
Mora, Thierry;
Walczak, Aleksandra M.

Publication type:

Article

Correction: Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005624

By:

Sandler, Roman A.;
Fetterhoff, Dustin;
Hampson, Robert E.;
Deadwyler, Sam A.;
Marmarelis, Vasilis Z.

Publication type:

Article

Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005618

By:

Wu, Hua-Qing;
Cheng, Mei-Ling;
Lai, Jin-Mei;
Wu, Hsuan-Hui;
Chen, Meng-Chun;
Liu, Wen-Huan;
Wu, Wu-Hsiung;
Chang, Peter Mu-Hsin;
Huang, Chi-Ying F.;
Tsou, Ann-Ping;
Shiao, Ming-Shi;
Wang, Feng-Sheng

Publication type:

Article

Inherent limitations of probabilistic models for protein-DNA binding specificity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005638

By:

Ruan, Shuxiang;
Stormo, Gary D.

Publication type:

Article

Combination therapeutics of Nilotinib and radiation in acute lymphoblastic leukemia as an effective method against drug-resistance.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005482

By:

Kaveh, Kamran;
Takahashi, Yutaka;
Farrar, Michael A.;
Storme, Guy;
Guido, Marcucci;
Piepenburg, Jamie;
Penning, Jackson;
Foo, Jasmine;
Leder, Kevin Z.;
Hui, Susanta K.

Publication type:

Article

Hybrid modeling and prediction of dynamical systems.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005655

By:

Hamilton, Franz;
Lloyd, Alun L.;
Flores, Kevin B.

Publication type:

Article