Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 4

Results: 49

Semantic prioritization of novel causative genomic variants.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005500

By:

Boudellioua, Imane;
Mahamad Razali, Rozaimi B.;
Kulmanov, Maxat;
Hashish, Yasmeen;
Bajic, Vladimir B.;
Goncalves-Serra, Eva;
Schoenmakers, Nadia;
Gkoutos, Georgios V.;
Schofield, Paul N.;
Hoehndorf, Robert

Publication type:

Article

Correction: Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Correction: The missing link: Predicting connectomes from noisy and partially observed tract tracing data.

Published in:

2017

By:

Hinne, Max;
Meijers, Annet;
Bakker, Rembrandt;
Tiesinga, Paul H. E.;
Mørup, Morten;
van Gerven, Marcel A. J.

Publication type:

Correction Notice

Correction: Deciding Not to Decide: Computational and Neural Evidence for Hidden Behavior in Sequential Choice.

Published in:

2017

By:

Gluth, Sebastian;
Rieskamp, Jörg;
Büchel, Christian

Publication type:

Correction Notice

Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005470

By:

Sumner, Tom;
Orton, Richard J.;
Green, Darren M.;
Kao, Rowland R.;
Gubbins, Simon

Publication type:

Article

When do correlations increase with firing rates in recurrent networks?

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005506

By:

Barreiro, Andrea K.;
Ly, Cheng

Publication type:

Article

Personalized glucose forecasting for type 2 diabetes using data assimilation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005232

By:

Albers, David J.;
Levine, Matthew;
Gluckman, Bruce;
Ginsberg, Henry;
Hripcsak, George;
Mamykina, Lena

Publication type:

Article

Correction: Spatial separation of two different pathways accounting for the generation of calcium signals in astrocytes.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Variable habitat conditions drive species covariation in the human microbiota.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005435

By:

Fisher, Charles K.;
Mora, Thierry;
Walczak, Aleksandra M.

Publication type:

Article

Intrinsically-generated fluctuating activity in excitatory-inhibitory networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005498

By:

Mastrogiuseppe, Francesca;
Ostojic, Srdjan

Publication type:

Article

ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005518

By:

Cai, Yunpeng;
Zheng, Wei;
Yao, Jin;
Yang, Yujie;
Mai, Volker;
Mao, Qi;
Sun, Yijun

Publication type:

Article

An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005516

By:

Ranft, Jonas;
Almeida, Leandro G.;
Rodriguez, Pamela C.;
Triller, Antoine;
Hakim, Vincent

Publication type:

Article

Predicting explorative motor learning using decision-making and motor noise.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005503

By:

Chen, Xiuli;
Mohr, Kieran;
Galea, Joseph M.

Publication type:

Article

Representational models: A common framework for understanding encoding, pattern-component, and representational-similarity analysis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005508

By:

Diedrichsen, Jörn;
Kriegeskorte, Nikolaus

Publication type:

Article

Exhaustive search of linear information encoding protein-peptide recognition.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005499

By:

Kelil, Abdellali;
Dubreuil, Benjamin;
Levy, Emmanuel D.;
Michnick, Stephen W.

Publication type:

Article

A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thalian.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005488

By:

García-Gómez, Mónica L.;
Azpeitia, Eugenio;
Álvarez-Buylla, Elena R.

Publication type:

Article

Cheminformatics-aided discovery of small-molecule Protein-Protein Interaction (PPI) dual inhibitors of Tumor Necrosis Factor (TNF) and Receptor Activator of NF-κB Ligand (RANKL).

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005372

By:

Melagraki, Georgia;
Ntougkos, Evangelos;
Rinotas, Vagelis;
Papaneophytou, Christos;
Leonis, Georgios;
Mavromoustakos, Thomas;
Kontopidis, George;
Douni, Eleni;
Afantitis, Antreas;
Kollias, George

Publication type:

Article

Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005428

By:

Peterson, Thomas A.;
Gauran, Iris Ivy M.;
Park, Junyong;
Park, DoHwan;
Kann, Maricel G.

Publication type:

Article

Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005507

By:

Schwalger, Tilo;
Deger, Moritz;
Gerstner, Wulfram

Publication type:

Article

Robust information propagation through noisy neural circuits.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005497

By:

Zylberberg, Joel;
Pouget, Alexandre;
Latham, Peter E.;
Shea-Brown, Eric

Publication type:

Article

Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005494

By:

Fritzemeier, Claus Jonathan;
Hartleb, Daniel;
Szappanos, Balázs;
Papp, Balázs;
Lercher, Martin J.

Publication type:

Article

Achieving global perfect homeostasis through transporter regulation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005458

By:

Savir, Yonatan;
Martynov, Alexander;
Springer, Michael

Publication type:

Article

Probabilistic fluorescence-based synapse detection.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005493

By:

Simhal, Anish K.;
Aguerrebere, Cecilia;
Collman, Forrest;
Vogelstein, Joshua T.;
Micheva, Kristina D.;
Weinberg, Richard J.;
Smith, Stephen J.;
Sapiro, Guillermo

Publication type:

Article

Dynamics of adaptive immunity against phage in bacterial populations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005486

By:

Bradde, Serena;
Vucelja, Marija;
Teşileanu, Tiberiu;
Balasubramanian, Vijay

Publication type:

Article

Effect of transcription factor resource sharing on gene expression noise.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005491

By:

Das, Dipjyoti;
Dey, Supravat;
Brewster, Robert C.;
Choubey, Sandeep

Publication type:

Article

Highly accessible AU-rich regions in 3’ untranslated regions are hotspots for binding of regulatory factors.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005460

By:

Plass, Mireya;
Rasmussen, Simon H.;
Krogh, Anders

Publication type:

Article

Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005452

By:

Zerlaut, Yann;
Destexhe, Alain

Publication type:

Article

Simple biochemical networks allow accurate sensing of multiple ligands with a single receptor.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005490

By:

Singh, Vijay;
Nemenman, Ilya

Publication type:

Article

Ten simple rules for making research software more robust.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005412

By:

Taschuk, Morgan;
Wilson, Greg

Publication type:

Article

Human behavioral complexity peaks at age 25.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005408

By:

Gauvrit, Nicolas;
Zenil, Hector;
Soler-Toscano, Fernando;
Delahaye, Jean-Paul;
Brugger, Peter

Publication type:

Article

Peptide probes derived from pertuzumab by molecular dynamics modeling for HER2 positive tumor imaging.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005441

By:

Yang, Xiaoliang;
Wang, Zihua;
Xiang, Zhichu;
Li, Dan;
Hu, Zhiyuan;
Cui, Wei;
Geng, Lingling;
Fang, Qiaojun

Publication type:

Article

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005409

By:

Klamt, Steffen;
Regensburger, Georg;
Gerstl, Matthias P.;
Jungreuthmayer, Christian;
Schuster, Stefan;
Mahadevan, Radhakrishnan;
Zanghellini, Jürgen;
Müller, Stefan

Publication type:

Article

Inferring modulators of genetic interactions with epistatic nested effects models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005496

By:

Pirkl, Martin;
Diekmann, Madeline;
van der Wees, Marlies;
Beerenwinkel, Niko;
Fröhlich, Holger;
Markowetz, Florian

Publication type:

Article

Increased decision thresholds enhance information gathering performance in juvenile Obsessive-Compulsive Disorder (OCD).

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005440

By:

Hauser, Tobias U.;
Moutoussis, Michael;
Iannaccone, Reto;
Brem, Silvia;
Walitza, Susanne;
Drechsler, Renate;
Dayan, Peter;
Dolan, Raymond J.

Publication type:

Article

Correction: Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Modeling disordered protein interactions from biophysical principles.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005485

By:

Peterson, Lenna X.;
Roy, Amitava;
Christoffer, Charles;
Terashi, Genki;
Kihara, Daisuke

Publication type:

Article

Amino acid composition predicts prion activity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005465

By:

Afsar Minhas, Fayyaz ul Amir;
Ross, Eric D.;
Ben-Hur, Asa

Publication type:

Article

Dose-response relationships for environmentally mediated infectious disease transmission models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005481

By:

Brouwer, Andrew F.;
Weir, Mark H.;
Eisenberg, Marisa C.;
Meza, Rafael;
Eisenberg, Joseph N. S.

Publication type:

Article

How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005358

By:

Kouvaris, Kostas;
Clune, Jeff;
Kounios, Loizos;
Brede, Markus;
Watson, Richard A.

Publication type:

Article

Functional asymmetry and plasticity of electrical synapses interconnecting neurons through a 36-state model of gap junction channel gating.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005464

By:

Snipas, Mindaugas;
Rimkute, Lina;
Kraujalis, Tadas;
Maciunas, Kestutis;
Bukauskas, Feliksas F.

Publication type:

Article

Dynamic compensation, parameter identifiability, and equivariances.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005447

By:

Sontag, Eduardo D.

Publication type:

Article

Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005469

By:

Shukron, Ofir;
Holcman, David

Publication type:

Article

Computation and measurement of cell decision making errors using single cell data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005436

By:

Habibi, Iman;
Cheong, Raymond;
Lipniacki, Tomasz;
Levchenko, Andre;
Emamian, Effat S.;
Abdi, Ali

Publication type:

Article

Geospatial characteristics of measles transmission in China during 2005−2014.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005474

By:

Yang, Wan;
Wen, Liang;
Li, Shen-Long;
Chen, Kai;
Zhang, Wen-Yi;
Shaman, Jeffrey

Publication type:

Article

Sequence dependency of canonical base pair opening in the DNA double helix.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005463

By:

Lindahl, Viveca;
Villa, Alessandra;
Hess, Berk

Publication type:

Article

The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005461

By:

Martines, Anne-Claire M. F.;
Van Eunen, Karen;
Reijngoud, Dirk-Jan;
Bakker, Barbara M.

Publication type:

Article

Role of non-native electrostatic interactions in the coupled folding and binding of PUMA with Mcl-1.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005468

By:

Chu, Wen-Ting;
Clarke, Jane;
Shammas, Sarah L.;
Wang, Jin

Publication type:

Article

Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005454

By:

Otero-Muras, Irene;
Yordanov, Pencho;
Stelling, Joerg

Publication type:

Article

Polarization and migration in the zebrafish posterior lateral line system.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005451

By:

Knutsdottir, Hildur;
Zmurchok, Cole;
Bhaskar, Dhananjay;
Palsson, Eirikur;
Dalle Nogare, Damian;
Chitnis, Ajay;
Edelstein-Keshet, Leah

Publication type:

Article