Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 10

Results: 66

The influence of astrocytes on the width of orientation hypercolumns in visual cortex: A computational perspective.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005785

By:

Philips, Ryan T.;
Sur, Mriganka;
Chakravarthy, V. Srinivasa

Publication type:

Article

Unified thalamic model generates multiple distinct oscillations with state-dependent entrainment by stimulation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005797

By:

Li, Guoshi;
Henriquez, Craig S.;
Fröhlich, Flavio

Publication type:

Article

Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005789

By:

Hake, Anna;
Pfeifer, Nico

Publication type:

Article

Diverse type 2 diabetes genetic risk factors functionally converge in a phenotype-focused gene network.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005816

By:

Sandor, Cynthia;
Beer, Nicola L.;
Webber, Caleb

Publication type:

Article

A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005828

By:

Vedula, Vijay;
Lee, Juhyun;
Xu, Hao;
Kuo, C.-C. Jay;
Hsiai, Tzung K.;
Marsden, Alison L.

Publication type:

Article

Concerted regulation of 2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005831

By:

Enkavi, Giray;
Mikkolainen, Heikki;
Güngör, Burçin;
Ikonen, Elina;
Vattulainen, Ilpo

Publication type:

Article

A mechanistic spatio-temporal framework for modelling individual-to-individual transmission—With an application to the 2014-2015 West Africa Ebola outbreak.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005798

By:

Lau, Max S. Y.;
Gibson, Gavin J.;
Adrakey, Hola;
McClelland, Amanda;
Riley, Steven;
Zelner, Jon;
Streftaris, George;
Funk, Sebastian;
Metcalf, Jessica;
Dalziel, Benjamin D.;
Grenfell, Bryan T.

Publication type:

Article

Maximum entropy methods for extracting the learned features of deep neural networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005836

By:

Finnegan, Alex;
Song, Jun S.

Publication type:

Article

Point process analysis of noise in early invertebrate vision.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005687

By:

Parag, Kris V.;
Vinnicombe, Glenn

Publication type:

Article

Modeling the adenosine system as a modulator of cognitive performance and sleep patterns during sleep restriction and recovery.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005759

By:

Phillips, Andrew J. K.;
Klerman, Elizabeth B.;
Butler, James P.

Publication type:

Article

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005815

By:

Roman, Theodore;
Xie, Lu;
Schwartz, Russell

Publication type:

Article

Dynamics and heterogeneity of brain damage in multiple sclerosis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005757

By:

Kotelnikova, Ekaterina;
Kiani, Narsis A.;
Abad, Elena;
Martinez-Lapiscina, Elena H.;
Andorra, Magi;
Zubizarreta, Irati;
Pulido-Valdeolivas, Irene;
Pertsovskaya, Inna;
Alexopoulos, Leonidas G.;
Olsson, Tomas;
Martin, Roland;
Paul, Friedemann;
Tegnér, Jesper;
Garcia-Ojalvo, Jordi;
Villoslada, Pablo

Publication type:

Article

Un-gating and allosteric modulation of a pentameric ligand-gated ion channel captured by molecular dynamics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005784

By:

Martin, Nicolas E;
Malik, Siddharth;
Calimet, Nicolas;
Changeux, Jean-Pierre;
Cecchini, Marco

Publication type:

Article

Neural field model to reconcile structure with function in primary visual cortex.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005821

By:

Rankin, James;
Chavane, Frédéric

Publication type:

Article

Transcriptomic correlates of neuron electrophysiological diversity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005814

By:

Tripathy, Shreejoy J.;
Toker, Lilah;
Li, Brenna;
Crichlow, Cindy-Lee;
Tebaykin, Dmitry;
Mancarci, B. Ogan;
Pavlidis, Paul

Publication type:

Article

Scaffolding the cup-shaped double membrane in autophagy.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005817

By:

Bahrami, Amir Houshang;
Lin, Mary G.;
Ren, Xuefeng;
Hurley, James H.;
Hummer, Gerhard

Publication type:

Article

Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005649

By:

Rubin, Timothy N.;
Koyejo, Oluwasanmi;
Gorgolewski, Krzysztof J.;
Jones, Michael N.;
Poldrack, Russell A.;
Yarkoni, Tal

Publication type:

Article

Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005786

By:

Bedbrook, Claire N.;
Yang, Kevin K.;
Rice, Austin J.;
Gradinaru, Viviana;
Arnold, Frances H.

Publication type:

Article

Learning infectious disease epidemiology in a modern framework.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005642

By:

Handel, Andreas

Publication type:

Article

Identification of immune signatures predictive of clinical protection from malaria.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005812

By:

Valletta, John Joseph;
Recker, Mario

Publication type:

Article

Distinct prediction errors in mesostriatal circuits of the human brain mediate learning about the values of both states and actions: evidence from high-resolution fMRI.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005810

By:

Colas, Jaron T.;
Pauli, Wolfgang M.;
Larsen, Tobias;
Tyszka, J. Michael;
O’Doherty, John P.

Publication type:

Article

Deconvolving sequence features that discriminate between overlapping regulatory annotations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005795

By:

Kakumanu, Akshay;
Velasco, Silvia;
Mazzoni, Esteban;
Mahony, Shaun

Publication type:

Article

Seasonality in risk of pandemic influenza emergence.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005749

By:

Fox, Spencer J.;
Miller, Joel C.;
Meyers, Lauren Ancel

Publication type:

Article

Quantifying the strength of quorum sensing crosstalk within microbial communities.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005809

By:

Silva, Kalinga Pavan T.;
Chellamuthu, Prithiviraj;
Boedicker, James Q.

Publication type:

Article

A deep convolutional neural network for classification of red blood cells in sickle cell anemia.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005746

By:

Xu, Mengjia;
Papageorgiou, Dimitrios P.;
Abidi, Sabia Z.;
Dao, Ming;
Zhao, Hong;
Karniadakis, George Em

Publication type:

Article

Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005755

By:

Barone, Lindsay;
Williams, Jason;
Micklos, David

Publication type:

Article

Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005791

By:

Wan, Cen;
Lees, Jonathan G.;
Minneci, Federico;
Orengo, Christine A.;
Jones, David T.

Publication type:

Article

Bayesian refinement of protein structures and ensembles against SAXS data using molecular dynamics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005800

By:

Shevchuk, Roman;
Hub, Jochen S.

Publication type:

Article

Vicus: Exploiting local structures to improve network-based analysis of biological data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005621

By:

Wang, Bo;
Huang, Lin;
Zhu, Yuke;
Kundaje, Anshul;
Batzoglou, Serafim;
Goldenberg, Anna

Publication type:

Article

Clusternomics: Integrative context-dependent clustering for heterogeneous datasets.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005781

By:

Gabasova, Evelina;
Reid, John;
Wernisch, Lorenz

Publication type:

Article

A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005807

By:

Abadi, Shiran;
Yan, Winston X.;
Amar, David;
Mayrose, Itay

Publication type:

Article

Systematic, network-based characterization of therapeutic target inhibitors.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005599

By:

Shen, Yao;
Alvarez, Mariano J.;
Bisikirska, Brygida;
Lachmann, Alexander;
Realubit, Ronald;
Pampou, Sergey;
Coku, Jorida;
Karan, Charles;
Califano, Andrea

Publication type:

Article

Ten simple rules for writing a response to reviewers.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005730

By:

Noble, William Stafford

Publication type:

Article

A quadratically regularized functional canonical correlation analysis for identifying the global structure of pleiotropy with NGS data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005788

By:

Lin, Nan;
Zhu, Yun;
Fan, Ruzong;
Xiong, Momiao

Publication type:

Article

Women are underrepresented in computational biology: An analysis of the scholarly literature in biology, computer science and computational biology.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005134

By:

Bonham, Kevin S.;
Stefan, Melanie I.

Publication type:

Article

Network approaches and applications in biology.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005771

By:

Ideker, Trey;
Nussinov, Ruth

Publication type:

Article

The role of glutamate in neuronal ion homeostasis: A case study of spreading depolarization.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005804

By:

Hübel, Niklas;
Hosseini-Zare, Mahshid S.;
Žiburkus, Jokūbas;
Ullah, Ghanim

Publication type:

Article

Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005625

By:

Drew, Kevin;
Müller, Christian L.;
Bonneau, Richard;
Marcotte, Edward M.

Publication type:

Article

BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005695

By:

Dao, Phuong;
Kim, Yoo-Ah;
Wojtowicz, Damian;
Madan, Sanna;
Sharan, Roded;
Przytycka, Teresa M.

Publication type:

Article

Network propagation in the cytoscape cyberinfrastructure.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005598

By:

Carlin, Daniel E.;
Demchak, Barry;
Pratt, Dexter;
Sage, Eric;
Ideker, Trey

Publication type:

Article

Incorporating networks in a probabilistic graphical model to find drivers for complex human diseases.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005580

By:

Mezlini, Aziz M.;
Goldenberg, Anna

Publication type:

Article

Structural host-microbiota interaction networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005579

By:

Guven-Maiorov, Emine;
Tsai, Chung-Jung;
Nussinov, Ruth

Publication type:

Article

The structured ‘low temperature’ phase of the retinal population code.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005792

By:

Ioffe, Mark L.;
IIBerry, Michael J.

Publication type:

Article

General principles of binding between cell surface receptors and multi-specific ligands: A computational study.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005805

By:

Chen, Jiawen;
Almo, Steven C.;
Wu, Yinghao

Publication type:

Article

Image-based model of the spectrin cytoskeleton for red blood cell simulation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005790

By:

Fai, Thomas G.;
Leo-Macias, Alejandra;
Stokes, David L.;
Peskin, Charles S.

Publication type:

Article

Neural coding in the visual system of Drosophila melanogaster: How do small neural populations support visually guided behaviours?

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005735

By:

Dewar, Alex D. M.;
Wystrach, Antoine;
Philippides, Andrew;
Graham, Paul

Publication type:

Article

Signatures of criticality arise from random subsampling in simple population models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005718

By:

Nonnenmacher, Marcel;
Behrens, Christian;
Berens, Philipp;
Bethge, Matthias;
Macke, Jakob H.

Publication type:

Article

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005777

By:

Orenstein, Yaron;
Pellow, David;
Marçais, Guillaume;
Shamir, Ron;
Kingsford, Carl

Publication type:

Article

Correction: Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.

Published in:: 2017
Publication type:: Correction Notice

Bistability, non-ergodicity, and inhibition in pairwise maximum-entropy models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005762

By:

Rostami, Vahid;
Mana, PierGianLuca Porta;
Grün, Sonja;
Helias, Moritz

Publication type:

Article