Works matching IS 1553734X AND DT 2016 AND VI 12 AND IP 3

Results: 54

Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004805

By:

Cvicek, Vaclav;
IIIGoddard, William A.;
Abrol, Ravinder

Publication type:

Article

Assessing Concordance of Drug-Induced Transcriptional Response in Rodent Liver and Cultured Hepatocytes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004847

By:

Sutherland, Jeffrey J.;
Jolly, Robert A.;
Goldstein, Keith M.;
Stevens, James L.

Publication type:

Article

Early Transcriptome Signatures from Immunized Mouse Dendritic Cells Predict Late Vaccine-Induced T-Cell Responses.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004801

By:

Dérian, Nicolas;
Bellier, Bertrand;
Pham, Hang Phuong;
Tsitoura, Eliza;
Kazazi, Dorothea;
Huret, Christophe;
Mavromara, Penelope;
Klatzmann, David;
Six, Adrien

Publication type:

Article

Correction: Antenna Mechanism of Length Control of Actin Cables.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Deep Learning for Population Genetic Inference.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004845

By:

Sheehan, Sara;
Song, Yun S.

Publication type:

Article

Impaired Air Conditioning within the Nasal Cavity in Flat-Faced Homo.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004807

By:

Nishimura, Takeshi;
Mori, Futoshi;
Hanida, Sho;
Kumahata, Kiyoshi;
Ishikawa, Shigeru;
Samarat, Kaouthar;
Miyabe-Nishiwaki, Takako;
Hayashi, Misato;
Tomonaga, Masaki;
Suzuki, Juri;
Matsuzawa, Tetsuro;
Matsuzawa, Teruo

Publication type:

Article

Cellular Growth Arrest and Persistence from Enzyme Saturation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004825

By:

Ray, J. Christian J.;
Wickersheim, Michelle L.;
Jalihal, Ameya P.;
Adeshina, Yusuf O.;
Cooper, Tim F.;
Balázsi, Gábor

Publication type:

Article

Revealing the True Incidence of Pandemic A(H1N1)pdm09 Influenza in Finland during the First Two Seasons — An Analysis Based on a Dynamic Transmission Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004803

By:

Shubin, Mikhail;
Lebedev, Artem;
Lyytikäinen, Outi;
Auranen, Kari

Publication type:

Article

Modeling the Excess Cell Surface Stored in a Complex Morphology of Bleb-Like Protrusions.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004841

By:

Kapustina, Maryna;
Tsygankov, Denis;
Zhao, Jia;
Wessler, Timothy;
Yang, Xiaofeng;
Chen, Alex;
Roach, Nathan;
Elston, Timothy C.;
Wang, Qi;
Jacobson, Ken;
Forest, M. Gregory

Publication type:

Article

Similarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004834

By:

Tiwari, Sandhya P.;
Reuter, Nathalie

Publication type:

Article

A New Fiji-Based Algorithm That Systematically Quantifies Nine Synaptic Parameters Provides Insights into Drosophila NMJ Morphometry.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004823

By:

Nijhof, Bonnie;
Castells-Nobau, Anna;
Wolf, Louis;
Scheffer-de Gooyert, Jolanda M.;
Monedero, Ignacio;
Torroja, Laura;
Coromina, Lluis;
van der Laak, Jeroen A. W. M.;
Schenck, Annette

Publication type:

Article

Persistence and Adaptation in Immunity: T Cells Balance the Extent and Thoroughness of Search.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004818

By:

Fricke, G. Matthew;
Letendre, Kenneth A.;
Moses, Melanie E.;
Cannon, Judy L.

Publication type:

Article

Systems Pharmacology and Rational Polypharmacy: Nitric Oxide−Cyclic GMP Signaling Pathway as an Illustrative Example and Derivation of the General Case.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004822

By:

Garmaroudi, Farshid S.;
Handy, Diane E.;
Liu, Yang-Yu;
Loscalzo, Joseph

Publication type:

Article

Dynamic Allostery Mediated by a Conserved Tryptophan in the Tec Family Kinases.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004826

By:

Chopra, Nikita;
Wales, Thomas E.;
Joseph, Raji E.;
Boyken, Scott E.;
Engen, John R.;
Jernigan, Robert L.;
Andreotti, Amy H.

Publication type:

Article

ISCB’s Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004816

By:

Berger, Bonnie;
Gaasterland, Terry;
Lengauer, Thomas;
Orengo, Christine;
Gaeta, Bruno;
Markel, Scott;
Valencia, Alfonso

Publication type:

Article

Evolutionary Conserved Positions Define Protein Conformational Diversity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004775

By:

Saldaño, Tadeo E.;
Monzon, Alexander M.;
Parisi, Gustavo;
Fernandez-Alberti, Sebastian

Publication type:

Article

Noise Expands the Response Range of the Bacillus subtilis Competence Circuit.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004793

By:

Mugler, Andrew;
Kittisopikul, Mark;
Hayden, Luke;
Liu, Jintao;
Wiggins, Chris H.;
Süel, Gürol M.;
Walczak, Aleksandra M.

Publication type:

Article

Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004768

By:

Wilmes, Katharina A.;
Sprekeler, Henning;
Schreiber, Susanne

Publication type:

Article

Application of Rigidity Theory to the Thermostabilization of Lipase A from Bacillus subtilis.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004754

By:

Rathi, Prakash Chandra;
Fulton, Alexander;
Jaeger, Karl-Erich;
Gohlke, Holger

Publication type:

Article

Correction: A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent "Heterosynaptic" LTD in the Dentate Gyrus In Vivo.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Quantitative Analysis of Axonal Branch Dynamics in the Developing Nervous System.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004813

By:

Chalmers, Kelsey;
Kita, Elizabeth M.;
Scott, Ethan K.;
Goodhill, Geoffrey J.

Publication type:

Article

A Sensorimotor Model for Computing Intended Reach Trajectories.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004734

By:

Üstün, Cevat

Publication type:

Article

Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004762

By:

Gilson, Matthieu;
Moreno-Bote, Ruben;
Ponce-Alvarez, Adrián;
Ritter, Petra;
Deco, Gustavo

Publication type:

Article

Feedback, Lineages and Self-Organizing Morphogenesis.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004814

By:

Kunche, Sameeran;
Yan, Huaming;
Calof, Anne L.;
Lowengrub, John S.;
Lander, Arthur D.

Publication type:

Article

Dynamic Modelling Reveals ‘Hotspots’ on the Pathway to Enzyme-Substrate Complex Formation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004811

By:

Gordon, Shane E.;
Weber, Daniel K.;
Downton, Matthew T.;
Wagner, John;
Perugini, Matthew A.

Publication type:

Article

Motor Demands Constrain Cognitive Rule Structures.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004785

By:

Collins, Anne Gabrielle Eva;
Frank, Michael Joshua

Publication type:

Article

Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004784

By:

Milias-Argeitis, Andreas;
Oliveira, Ana Paula;
Gerosa, Luca;
Falter, Laura;
Sauer, Uwe;
Lygeros, John

Publication type:

Article

Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004812

By:

Kuritzin, Andrej;
Kischka, Tabea;
Schmitz, Jürgen;
Churakov, Gennady

Publication type:

Article

Correction: Inferring Neuronal Dynamics from Calcium Imaging Data Using Biophysical Models and Bayesian Inference.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004788

By:

Ikebe, Jinzen;
Sakuraba, Shun;
Kono, Hidetoshi

Publication type:

Article

Distinguishing Antimicrobial Models with Different Resistance Mechanisms via Population Pharmacodynamic Modeling.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004782

By:

Jacobs, Matthieu;
Grégoire, Nicolas;
Couet, William;
Bulitta, Jurgen B.

Publication type:

Article

Causal Inference for Spatial Constancy across Saccades.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004766

By:

Atsma, Jeroen;
Maij, Femke;
Koppen, Mathieu;
Irwin, David E.;
Medendorp, W. Pieter

Publication type:

Article

Simulation and Theory of Antibody Binding to Crowded Antigen-Covered Surfaces.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004752

By:

De Michele, Cristiano;
De Los Rios, Paolo;
Foffi, Giuseppe;
Piazza, Francesco

Publication type:

Article

The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004749

By:

Cadosch, Dominique;
Abel zur Wiesch, Pia;
Kouyos, Roger;
Bonhoeffer, Sebastian

Publication type:

Article

SMOG 2: A Versatile Software Package for Generating Structure-Based Models.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004794

By:

Noel, Jeffrey K.;
Levi, Mariana;
Raghunathan, Mohit;
Lammert, Heiko;
Hayes, Ryan L.;
Onuchic, José N.;
Whitford, Paul C.

Publication type:

Article

NMR Methods to Study Dynamic Allostery.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004620

By:

Grutsch, Sarina;
Brüschweiler, Sven;
Tollinger, Martin

Publication type:

Article

Understanding Genotype-Phenotype Effects in Cancer via Network Approaches.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004747

By:

Kim, Yoo-Ah;
Cho, Dong-Yeon;
Przytycka, Teresa M.

Publication type:

Article

Systems Approaches to the Eukaryotic Stress Response.

Published in:

2016

By:

Vogel, Christine

Publication type:

Opinion

Integrating Transgenic Vector Manipulation with Clinical Interventions to Manage Vector-Borne Diseases.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004695

By:

Okamoto, Kenichi W.;
Gould, Fred;
Lloyd, Alun L.

Publication type:

Article

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004780

By:

Raviram, Ramya;
Rocha, Pedro P.;
Müller, Christian L.;
Miraldi, Emily R.;
Badri, Sana;
Fu, Yi;
Swanzey, Emily;
Proudhon, Charlotte;
Snetkova, Valentina;
Bonneau, Richard;
Skok, Jane A.

Publication type:

Article

Stability of Ensemble Models Predicts Productivity of Enzymatic Systems.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004800

By:

Theisen, Matthew K.;
Lafontaine Rivera, Jimmy G.;
Liao, James C.

Publication type:

Article

Pathway-Based Genomics Prediction using Generalized Elastic Net.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004790

By:

Sokolov, Artem;
Carlin, Daniel E.;
Paull, Evan O.;
Baertsch, Robert;
Stuart, Joshua M.

Publication type:

Article

BIITE: A Tool to Determine HLA Class II Epitopes from T Cell ELISpot Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004796

By:

Boelen, Lies;
O’Neill, Patrick K.;
Quigley, Kathryn J.;
Reynolds, Catherine J.;
Maillere, Bernard;
Robinson, John H.;
Lertmemongkolchai, Ganjana;
Altmann, Daniel M.;
Boyton, Rosemary J.;
Asquith, Becca

Publication type:

Article

Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004802

By:

Giordano, Nils;
Mairet, Francis;
Gouzé, Jean-Luc;
Geiselmann, Johannes;
de Jong, Hidde

Publication type:

Article

Reconstruction of Tissue-Specific Metabolic Networks Using CORDA.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004808

By:

Schultz, André;
Qutub, Amina A.

Publication type:

Article

Annealed Importance Sampling for Neural Mass Models.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004797

By:

Penny, Will;
Sengupta, Biswa

Publication type:

Article

Correction: A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Stability and Competition in Multi-spike Models of Spike-Timing Dependent Plasticity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004750

By:

Babadi, Baktash;
Abbott, L. F.

Publication type:

Article

Extracting Behaviorally Relevant Traits from Natural Stimuli: Benefits of Combinatorial Representations at the Accessory Olfactory Bulb.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004798

By:

Kahan, Anat;
Ben-Shaul, Yoram

Publication type:

Article

Correction: Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring.

Published in:

2016

By:

null, null

Publication type:

Correction Notice