Works matching IS 1553734X AND DT 2016 AND VI 12 AND IP 2

Results: 58

Control of βAR- and N-methyl-D-aspartate (NMDA) Receptor-Dependent cAMP Dynamics in Hippocampal Neurons.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004735

By:

Chay, Andrew;
Zamparo, Ilaria;
Koschinski, Andreas;
Zaccolo, Manuela;
Blackwell, Kim T.

Publication type:

Article

Correction: ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Evolution of Cooperation in Social Dilemmas on Complex Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004779

By:

Iyer, Swami;
Killingback, Timothy

Publication type:

Article

Oligomers of Heat-Shock Proteins: Structures That Don’t Imply Function.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004756

By:

Jacobs, William M.;
Knowles, Tuomas P. J.;
Frenkel, Daan

Publication type:

Article

Non-monotonic Response to Monotonic Stimulus: Regulation of Glyoxylate Shunt Gene-Expression Dynamics in Mycobacterium tuberculosis.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004741

By:

Ascensao, Joao A.;
Datta, Pratik;
Hancioglu, Baris;
Sontag, Eduardo;
Gennaro, Maria L.;
Igoshin, Oleg A.

Publication type:

Article

Model-Driven Understanding of Palmitoylation Dynamics: Regulated Acylation of the Endoplasmic Reticulum Chaperone Calnexin.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004774

By:

Dallavilla, Tiziano;
Abrami, Laurence;
Sandoz, Patrick A.;
Savoglidis, Georgios;
Hatzimanikatis, Vassily;
van der Goot, F. Gisou

Publication type:

Article

BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004772

By:

Liu, Juntao;
Li, Guojun;
Chang, Zheng;
Yu, Ting;
Liu, Bingqiang;
McMullen, Rick;
Chen, Pengyin;
Huang, Xiuzhen

Publication type:

Article

Training Excitatory-Inhibitory Recurrent Neural Networks for Cognitive Tasks: A Simple and Flexible Framework.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004792

By:

Song, H. Francis;
Yang, Guangyu R.;
Wang, Xiao-Jing

Publication type:

Article

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004765

By:

Şenbabaoğlu, Yasin;
Sümer, Selçuk Onur;
Sánchez-Vega, Francisco;
Bemis, Debra;
Ciriello, Giovanni;
Schultz, Nikolaus;
Sander, Chris

Publication type:

Article

Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004787

By:

Hat, Beata;
Kochańczyk, Marek;
Bogdał, Marta N.;
Lipniacki, Tomasz

Publication type:

Article

A Sensory-Driven Trade-Off between Coordinated Motion in Social Prey and a Predator’s Visual Confusion.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004708

By:

Lemasson, Bertrand H.;
Tanner, Colby J.;
Dimperio, Eric

Publication type:

Article

Inferring Neuronal Dynamics from Calcium Imaging Data Using Biophysical Models and Bayesian Inference.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004736

By:

Rahmati, Vahid;
Kirmse, Knut;
Marković, Dimitrije;
Holthoff, Knut;
Kiebel, Stefan J.

Publication type:

Article

Cortical Resonance Frequencies Emerge from Network Size and Connectivity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004740

By:

Lea-Carnall, Caroline A.;
Montemurro, Marcelo A.;
Trujillo-Barreto, Nelson J.;
Parkes, Laura M.;
El-Deredy, Wael

Publication type:

Article

The 2015 Bioinformatics Open Source Conference (BOSC 2015).

Published in:

2016

By:

Harris, Nomi L.;
Cock, Peter J. A.;
Lapp, Hilmar;
Chapman, Brad;
Davey, Rob;
Fields, Christopher;
Hokamp, Karsten;
Munoz-Torres, Monica

Publication type:

Proceeding

Cell Assembly Dynamics of Sparsely-Connected Inhibitory Networks: A Simple Model for the Collective Activity of Striatal Projection Neurons.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004778

By:

Angulo-Garcia, David;
Berke, Joshua D.;
Torcini, Alessandro

Publication type:

Article

PLOS Computational Biology 2015 Reviewer Thank You.

Published in:: PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004815
Publication type:: Article

Enhanced Sensitivity to Rapid Input Fluctuations by Nonlinear Threshold Dynamics in Neocortical Pyramidal Neurons.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004761

By:

Mensi, Skander;
Hagens, Olivier;
Gerstner, Wulfram;
Pozzorini, Christian

Publication type:

Article

Phenotypic Heterogeneity and the Evolution of Bacterial Life Cycles.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004764

By:

van Gestel, Jordi;
Nowak, Martin A.

Publication type:

Article

Correction: Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Quantifying Transmission Investment in Malaria Parasites.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004718

By:

Greischar, Megan A.;
Mideo, Nicole;
Read, Andrew F.;
Bjørnstad, Ottar N.

Publication type:

Article

A Feedback Model of Attention Explains the Diverse Effects of Attention on Neural Firing Rates and Receptive Field Structure.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004770

By:

Miconi, Thomas;
VanRullen, Rufin

Publication type:

Article

Correction: Membrane Partitioning of Anionic, Ligand-Coated Nanoparticles Is Accompanied by Ligand Snorkeling, Local Disordering, and Cholesterol Depletion.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Optimal Information Representation and Criticality in an Adaptive Sensory Recurrent Neuronal Network.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004698

By:

Shriki, Oren;
Yellin, Dovi

Publication type:

Article

Developing a Physiologically-Based Pharmacokinetic Model Knowledgebase in Support of Provisional Model Construction.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004495

By:

Lu, Jingtao;
Goldsmith, Michael-Rock;
Grulke, Christopher M.;
Chang, Daniel T.;
Brooks, Raina D.;
Leonard, Jeremy A.;
Phillips, Martin B.;
Hypes, Ethan D.;
Fair, Matthew J.;
Tornero-Velez, Rogelio;
Johnson, Jeffre;
Dary, Curtis C.;
Tan, Yu-Mei

Publication type:

Article

Structural and Functional Characterization of a Caenorhabditis elegans Genetic Interaction Network within Pathways.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004738

By:

Boucher, Benjamin;
Lee, Anna Y.;
Hallett, Michael;
Jenna, Sarah

Publication type:

Article

On the Origins and Control of Community Types in the Human Microbiome.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004688

By:

Gibson, Travis E.;
Bashan, Amir;
Cao, Hong-Tai;
Weiss, Scott T.;
Liu, Yang-Yu

Publication type:

Article

ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004475

By:

Chindelevitch, Leonid;
Colijn, Caroline;
Moodley, Prashini;
Wilson, Douglas;
Cohen, Ted

Publication type:

Article

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004755

By:

Wang, Ting;
Ren, Zhao;
Ding, Ying;
Fang, Zhou;
Sun, Zhe;
MacDonald, Matthew L.;
Sweet, Robert A.;
Wang, Jieru;
Chen, Wei

Publication type:

Article

Muscle Synergies Heavily Influence the Neural Control of Arm Endpoint Stiffness and Energy Consumption.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004737

By:

Inouye, Joshua M.;
Valero-Cuevas, Francisco J.

Publication type:

Article

Ten Simple Rules for Selecting a Bio-ontology.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004743

By:

Malone, James;
Stevens, Robert;
Jupp, Simon;
Hancocks, Tom;
Parkinson, Helen;
Brooksbank, Cath

Publication type:

Article

Using an Insect Mushroom Body Circuit to Encode Route Memory in Complex Natural Environments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004683

By:

Ardin, Paul;
Peng, Fei;
Mangan, Michael;
Lagogiannis, Konstantinos;
Webb, Barbara

Publication type:

Article

Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004760

By:

Liu, Yong;
Wu, Min;
Miao, Chunyan;
Zhao, Peilin;
Li, Xiao-Li

Publication type:

Article

Radial Frequency Analysis of Contour Shapes in the Visual Cortex.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004719

By:

Salmela, Viljami R.;
Henriksson, Linda;
Vanni, Simo

Publication type:

Article

Non-monotonic Temporal-Weighting Indicates a Dynamically Modulated Evidence-Integration Mechanism.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004667

By:

Bronfman, Zohar Z.;
Brezis, Noam;
Usher, Marius

Publication type:

Article

Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004759

By:

Miner, Daniel;
Triesch, Jochen

Publication type:

Article

Practical Approaches for Detecting Selection in Microbial Genomes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004739

By:

Hedge, Jessica;
Wilson, Daniel J.

Publication type:

Article

Robust Unidirectional Airflow through Avian Lungs: New Insights from a Piecewise Linear Mathematical Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004637

By:

Harvey, Emily P.;
Ben-Tal, Alona

Publication type:

Article

What Population Reveals about Individual Cell Identity: Single-Cell Parameter Estimation of Models of Gene Expression in Yeast.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004706

By:

Llamosi, Artémis;
Gonzalez-Vargas, Andres M.;
Versari, Cristian;
Cinquemani, Eugenio;
Ferrari-Trecate, Giancarlo;
Hersen, Pascal;
Batt, Gregory

Publication type:

Article

Inferring Growth Control Mechanisms in Growing Multi-cellular Spheroids of NSCLC Cells from Spatial-Temporal Image Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004412

By:

Jagiella, Nick;
Müller, Benedikt;
Müller, Margareta;
Vignon-Clementel, Irene E.;
Drasdo, Dirk

Publication type:

Article

Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004611

By:

Donovan, Rory M.;
Tapia, Jose-Juan;
Sullivan, Devin P.;
Faeder, James R.;
Murphy, Robert F.;
Dittrich, Markus;
Zuckerman, Daniel M.

Publication type:

Article

Computational Cancer Biology: An Evolutionary Perspective.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004717

By:

Beerenwinkel, Niko;
Greenman, Chris D.;
Lagergren, Jens

Publication type:

Article

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004395

By:

Mulder, Nicola J.;
Christoffels, Alan;
de Oliveira, Tulio;
Gamieldien, Junaid;
Hazelhurst, Scott;
Joubert, Fourie;
Kumuthini, Judit;
Pillay, Ché S.;
Snoep, Jacky L.;
Tastan Bishop, Özlem;
Tiffin, Nicki

Publication type:

Article

The Emotional Gatekeeper: A Computational Model of Attentional Selection and Suppression through the Pathway from the Amygdala to the Inhibitory Thalamic Reticular Nucleus.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004722

By:

John, Yohan J.;
Zikopoulos, Basilis;
Bullock, Daniel;
Barbas, Helen

Publication type:

Article

Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004711

By:

Guturu, Harendra;
Chinchali, Sandeep;
Clarke, Shoa L.;
Bejerano, Gill

Publication type:

Article

Persistent Chaos of Measles Epidemics in the Prevaccination United States Caused by a Small Change in Seasonal Transmission Patterns.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004655

By:

Dalziel, Benjamin D.;
Bjørnstad, Ottar N.;
van Panhuis, Willem G.;
Burke, Donald S.;
Metcalf, C. Jessica E.;
Grenfell, Bryan T.

Publication type:

Article

MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004744

By:

Paugh, Steven W.;
Coss, David R.;
Bao, Ju;
Laudermilk, Lucas T.;
Grace, Christy R.;
Ferreira, Antonio M.;
Waddell, M. Brett;
Ridout, Granger;
Naeve, Deanna;
Leuze, Michael;
LoCascio, Philip F.;
Panetta, John C.;
Wilkinson, Mark R.;
Pui, Ching-Hon;
Naeve, Clayton W.;
Uberbacher, Edward C.;
Bonten, Erik J.;
Evans, William E.

Publication type:

Article

Ensemble Tractography.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004692

By:

Takemura, Hiromasa;
Caiafa, Cesar F.;
Wandell, Brian A.;
Pestilli, Franco

Publication type:

Article

Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004723

By:

Ortega, Davi R.;
Zhulin, Igor B.

Publication type:

Article

Correction: Random Wiring, Ganglion Cell Mosaics, and the Functional Architecture of the Visual Cortex.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Somato-dendritic Synaptic Plasticity and Error-backpropagation in Active Dendrites.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004638

By:

Schiess, Mathieu;
Urbanczik, Robert;
Senn, Walter

Publication type:

Article