Works matching IS 1553734X AND DT 2016 AND VI 12 AND IP 12

Results: 60

Game-Changing Innovations: How Culture Can Change the Parameters of Its Own Evolution and Induce Abrupt Cultural Shifts.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005302

By:

Kolodny, Oren;
Creanza, Nicole;
Feldman, Marcus W.

Publication type:

Article

Beyond the Hypercube: Evolutionary Accessibility of Fitness Landscapes with Realistic Mutational Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005218

By:

Zagorski, Marcin;
Burda, Zdzislaw;
Waclaw, Bartlomiej

Publication type:

Article

Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005220

By:

Drawert, Brian;
Hellander, Andreas;
Bales, Ben;
Banerjee, Debjani;
Bellesia, Giovanni;
Jr.Daigle, Bernie J.;
Douglas, Geoffrey;
Gu, Mengyuan;
Gupta, Anand;
Hellander, Stefan;
Horuk, Chris;
Nath, Dibyendu;
Takkar, Aviral;
Wu, Sheng;
Lötstedt, Per;
Krintz, Chandra;
Petzold, Linda R.

Publication type:

Article

Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005185

By:

Cowley, Benjamin R.;
Smith, Matthew A.;
Kohn, Adam;
Yu, Byron M.

Publication type:

Article

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005271

By:

Blanco-Míguez, Aitor;
Meier-Kolthoff, Jan P.;
Gutiérrez-Jácome, Alberto;
Göker, Markus;
Fdez-Riverola, Florentino;
Sánchez, Borja;
Lourenço, Anália

Publication type:

Article

Stability of Cross-Feeding Polymorphisms in Microbial Communities.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005269

By:

Gudelj, Ivana;
Kinnersley, Margie;
Rashkov, Peter;
Schmidt, Karen;
Rosenzweig, Frank

Publication type:

Article

The 5th ISCB Wikipedia Competition: Coming to a Classroom Near You?

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005235

By:

Kilpatrick, Alastair M.

Publication type:

Article

Human Inferences about Sequences: A Minimal Transition Probability Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005260

By:

Meyniel, Florent;
Maheu, Maxime;
Dehaene, Stanislas

Publication type:

Article

Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005274

By:

Kryuchkova-Mostacci, Nadezda;
Robinson-Rechavi, Marc

Publication type:

Article

The Effect of Gap Junctional Coupling on the Spatiotemporal Patterns of Ca<sup>2+</sup> Signals and the Harmonization of Ca<sup>2+</sup>-Related Cellular Responses.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005295

By:

Dougoud, Michaël;
Vinckenbosch, Laura;
Mazza, Christian;
Schwaller, Beat;
Pecze, Laszlo

Publication type:

Article

Feedback, Mass Conservation and Reaction Kinetics Impact the Robustness of Cellular Oscillations.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005298

By:

Baum, Katharina;
Politi, Antonio Z.;
Kofahl, Bente;
Steuer, Ralf;
Wolf, Jana

Publication type:

Article

Correction: Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Stereotypical Escape Behavior in Caenorhabditis elegans Allows Quantification of Effective Heat Stimulus Level.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005262

By:

Leung, Kawai;
Mohammadi, Aylia;
Ryu, William S.;
Nemenman, Ilya

Publication type:

Article

Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005292

By:

Carstens, Simeon;
Nilges, Michael;
Habeck, Michael

Publication type:

Article

Novel Models of Visual Topographic Map Alignment in the Superior Colliculus.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005315

By:

Tikidji-Hamburyan, Ruben A.;
El-Ghazawi, Tarek A.;
Triplett, Jason W.

Publication type:

Article

Population Heterogeneity in the Epithelial to Mesenchymal Transition Is Controlled by NFAT and Phosphorylated Sp1.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005251

By:

Gould, Russell;
Bassen, David M.;
Chakrabarti, Anirikh;
Varner, Jeffrey D.;
Butcher, Jonathan

Publication type:

Article

m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005287

By:

Zhang, Songyao;
Zhang, Shaowu;
Liu, Lian;
Meng, Jia;
Huang, Yufei

Publication type:

Article

The Hamiltonian Brain: Efficient Probabilistic Inference with Excitatory-Inhibitory Neural Circuit Dynamics.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005186

By:

Aitchison, Laurence;
Lengyel, Máté

Publication type:

Article

Decoding Single Molecule Time Traces with Dynamic Disorder.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005286

By:

Hwang, Wonseok;
Lee, Il-Buem;
Hong, Seok-Cheol;
Hyeon, Changbong

Publication type:

Article

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005294

By:

Neuwald, Andrew F.;
Altschul, Stephen F.

Publication type:

Article

Normal Modes Expose Active Sites in Enzymes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005293

By:

Glantz-Gashai, Yitav;
Meirson, Tomer;
Samson, Abraham O.

Publication type:

Article

Systematic Approximations to Susceptible-Infectious-Susceptible Dynamics on Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005296

By:

Keeling, Matt J.;
House, Thomas;
Cooper, Alison J.;
Pellis, Lorenzo

Publication type:

Article

Zipf’s Law Arises Naturally When There Are Underlying, Unobserved Variables.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005110

By:

Aitchison, Laurence;
Corradi, Nicola;
Latham, Peter E.

Publication type:

Article

Atrial Heterogeneity Generates Re-entrant Substrate during Atrial Fibrillation and Anti-arrhythmic Drug Action: Mechanistic Insights from Canine Atrial Models.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005245

By:

Varela, Marta;
Colman, Michael A.;
Hancox, Jules C.;
Aslanidi, Oleg V.

Publication type:

Article

Glycoside Hydrolases across Environmental Microbial Communities.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005300

By:

Berlemont, Renaud;
Martiny, Adam C.

Publication type:

Article

Competing Mechanistic Hypotheses of Acetaminophen-Induced Hepatotoxicity Challenged by Virtual Experiments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005253

By:

Smith, Andrew K.;
Petersen, Brenden K.;
Ropella, Glen E. P.;
Kennedy, Ryan C.;
Kaplowitz, Neil;
Ookhtens, Murad;
Hunt, C. Anthony

Publication type:

Article

The Multilayer Connectome of Caenorhabditis elegans.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005283

By:

Bentley, Barry;
Branicky, Robyn;
Barnes, Christopher L.;
Chew, Yee Lian;
Yemini, Eviatar;
Bullmore, Edward T.;
Vértes, Petra E.;
Schafer, William R.

Publication type:

Article

Inferring Aggregated Functional Traits from Metagenomic Data Using Constrained Non-negative Matrix Factorization: Application to Fiber Degradation in the Human Gut Microbiota.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005252

By:

Raguideau, Sébastien;
Plancade, Sandra;
Pons, Nicolas;
Leclerc, Marion;
Laroche, Béatrice

Publication type:

Article

Modeling Contact Inhibition of Locomotion of Colliding Cells Migrating on Micropatterned Substrates.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005239

By:

Kulawiak, Dirk Alexander;
Camley, Brian A.;
Rappel, Wouter-Jan

Publication type:

Article

Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005249

By:

Huska, Matthew;
Vingron, Martin

Publication type:

Article

Hierarchical Post-transcriptional Regulation of Colicin E2 Expression in Escherichia coli.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005243

By:

Lechner, Matthias;
Opitz, Madeleine;
Frey, Erwin;
Schwarz, Mathias

Publication type:

Article

Lack of Ecological and Life History Context Can Create the Illusion of Social Interactions in Dictyostelium discoideum.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005246

By:

Martínez-García, Ricardo;
Tarnita, Corina E.

Publication type:

Article

An Extended Normalization Model of Attention Accounts for Feature-Based Attentional Enhancement of Both Response and Coherence Gain.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005225

By:

Krishna, B. Suresh;
Schwedhelm, Philipp;
Treue, Stefan

Publication type:

Article

Role of Autoregulation and Relative Synthesis of Operon Partners in Alternative Sigma Factor Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005267

By:

Narula, Jatin;
Tiwari, Abhinav;
Igoshin, Oleg A.

Publication type:

Article

Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005204

By:

Subramanian, Rahul;
Graham, Andrea L.;
Grenfell, Bryan T.;
Arinaminpathy, Nimalan

Publication type:

Article

Encoding in Balanced Networks: Revisiting Spike Patterns and Chaos in Stimulus-Driven Systems.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005258

By:

Lajoie, Guillaume;
Lin, Kevin K.;
Thivierge, Jean-Philippe;
Shea-Brown, Eric

Publication type:

Article

Evolution at ‘Sutures’ and ‘Centers’: Recombination Can Aid Adaptation of Spatially Structured Populations on Rugged Fitness Landscapes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005247

By:

Cooper, Jacob D.;
Kerr, Benjamin

Publication type:

Article

When Optimal Feedback Control Is Not Enough: Feedforward Strategies Are Required for Optimal Control with Active Sensing.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005190

By:

Yeo, Sang-Hoon;
Franklin, David W.;
Wolpert, Daniel M.

Publication type:

Article

Impact of Lipid Composition and Receptor Conformation on the Spatio-temporal Organization of μ-Opioid Receptors in a Multi-component Plasma Membrane Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005240

By:

Marino, Kristen A.;
Prada-Gracia, Diego;
Provasi, Davide;
Filizola, Marta

Publication type:

Article

Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005236

By:

Schaff, James C.;
Gao, Fei;
Li, Ye;
Novak, Igor L.;
Slepchenko, Boris M.

Publication type:

Article

Temporal Dynamics and Developmental Maturation of Salience, Default and Central-Executive Network Interactions Revealed by Variational Bayes Hidden Markov Modeling.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005138

By:

Ryali, Srikanth;
Supekar, Kaustubh;
Chen, Tianwen;
Kochalka, John;
Cai, Weidong;
Nicholas, Jonathan;
Padmanabhan, Aarthi;
Menon, Vinod

Publication type:

Article

Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005256

By:

Desponds, Jonathan;
Tran, Huy;
Ferraro, Teresa;
Lucas, Tanguy;
Perez Romero, Carmina;
Guillou, Aurelien;
Fradin, Cecile;
Coppey, Mathieu;
Dostatni, Nathalie;
Walczak, Aleksandra M.

Publication type:

Article

Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005266

By:

Pett, J. Patrick;
Korenčič, Anja;
Wesener, Felix;
Kramer, Achim;
Herzel, Hanspeter

Publication type:

Article

Utility and Limitations of Using Gene Expression Data to Identify Functional Associations.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005244

By:

Uygun, Sahra;
Peng, Cheng;
Lehti-Shiu, Melissa D.;
Last, Robert L.;
Shiu, Shin-Han

Publication type:

Article

Alpha Helices Are More Robust to Mutations than Beta Strands.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005242

By:

Abrusán, György;
Marsh, Joseph A.

Publication type:

Article

Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005198

By:

Re, Angela;
Waldron, Levi;
Quattrone, Alessandro

Publication type:

Article

A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005230

By:

Barik, Debashis;
Ball, David A.;
Peccoud, Jean;
Tyson, John J.

Publication type:

Article

Synchronization and Random Triggering of Lymphatic Vessel Contractions.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005231

By:

Baish, James W.;
Kunert, Christian;
Padera, Timothy P.;
Munn, Lance L.

Publication type:

Article

Spatiotemporal Analysis of the 2014 Ebola Epidemic in West Africa.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005210

By:

Backer, Jantien A.;
Wallinga, Jacco

Publication type:

Article

Scaling Properties of Dimensionality Reduction for Neural Populations and Network Models.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005141

By:

Williamson, Ryan C.;
Cowley, Benjamin R.;
Litwin-Kumar, Ashok;
Doiron, Brent;
Kohn, Adam;
Smith, Matthew A.;
Yu, Byron M.

Publication type:

Article