Works matching IS 1553734X AND DT 2015 AND VI 11 AND IP 9

Results: 45

Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004498

By:

Zhang, Naiqian;
Wang, Haiyun;
Fang, Yun;
Wang, Jun;
Zheng, Xiaoqi;
Liu, X. Shirley

Publication type:

Article

miRTex: A Text Mining System for miRNA-Gene Relation Extraction.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004391

By:

Li, Gang;
Ross, Karen E.;
Arighi, Cecilia N.;
Peng, Yifan;
Wu, Cathy H.;
Vijay-Shanker, K.

Publication type:

Article

Implicit Value Updating Explains Transitive Inference Performance: The Betasort Model.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004523

By:

Jensen, Greg;
Muñoz, Fabian;
Alkan, Yelda;
Ferrera, Vincent P.;
Terrace, Herbert S.

Publication type:

Article

Early Characterization of the Severity and Transmissibility of Pandemic Influenza Using Clinical Episode Data from Multiple Populations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004392

By:

Riley, Pete;
Ben-Nun, Michal;
Linker, Jon A.;
Cost, Angelia A.;
Sanchez, Jose L.;
George, Dylan;
Bacon, David P.;
Riley, Steven

Publication type:

Article

How to Grow a Computational Biology Lab.

Published in:

2015

By:

McHardy, Alice Carolyn

Publication type:

Opinion

You Are Not Working for Me; I Am Working with You.

Published in:

2015

By:

Markowetz, Florian

Publication type:

Opinion

Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004335

By:

Ollikainen, Noah;
de Jong, René M.;
Kortemme, Tanja

Publication type:

Article

Decoding Structural Properties of a Partially Unfolded Protein Substrate: En Route to Chaperone Binding.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004496

By:

Nagpal, Suhani;
Tiwari, Satyam;
Mapa, Koyeli;
Thukral, Lipi

Publication type:

Article

Automated Identification of Core Regulatory Genes in Human Gene Regulatory Networks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004504

By:

Narang, Vipin;
Ramli, Muhamad Azfar;
Singhal, Amit;
Kumar, Pavanish;
de Libero, Gennaro;
Poidinger, Michael;
Monterola, Christopher

Publication type:

Article

Dynamic Integration of Value Information into a Common Probability Currency as a Theory for Flexible Decision Making.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004402

By:

Christopoulos, Vassilios;
Schrater, Paul R.

Publication type:

Article

Systematic Prediction of Scaffold Proteins Reveals New Design Principles in Scaffold-Mediated Signal Transduction.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004508

By:

Hu, Jianfei;
Neiswinger, Johnathan;
Zhang, Jin;
Zhu, Heng;
Qian, Jiang

Publication type:

Article

The LUX Score: A Metric for Lipidome Homology.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004511

By:

Marella, Chakravarthy;
Torda, Andrew E.;
Schwudke, Dominik

Publication type:

Article

Multiscale Mechanical Model of the Pacinian Corpuscle Shows Depth and Anisotropy Contribute to the Receptor’s Characteristic Response to Indentation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004370

By:

Quindlen, Julia C.;
Lai, Victor K.;
Barocas, Victor H.

Publication type:

Article

Efficient Optimization of Stimuli for Model-Based Design of Experiments to Resolve Dynamical Uncertainty.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004488

By:

Mdluli, Thembi;
Buzzard, Gregery T.;
Rundell, Ann E.

Publication type:

Article

The Problem with Phi: A Critique of Integrated Information Theory.

Published in:

2015

By:

Cerullo, Michael A.

Publication type:

Opinion

Model-Based Reasoning in Humans Becomes Automatic with Training.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004463

By:

Economides, Marcos;
Kurth-Nelson, Zeb;
Lübbert, Annika;
Guitart-Masip, Marc;
Dolan, Raymond J.

Publication type:

Article

An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004350

By:

Foo, Jasmine;
Liu, Lin L;
Leder, Kevin;
Riester, Markus;
Iwasa, Yoh;
Lengauer, Christoph;
Michor, Franziska

Publication type:

Article

A Method to Constrain Genome-Scale Models with <sup>13</sup>C Labeling Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004363

By:

García Martín, Héctor;
Kumar, Vinay Satish;
Weaver, Daniel;
Ghosh, Amit;
Chubukov, Victor;
Mukhopadhyay, Aindrila;
Arkin, Adam;
Keasling, Jay D.

Publication type:

Article

Bioinformatics in Africa: The Rise of Ghana?

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004308

By:

Karikari, Thomas K.

Publication type:

Article

Structural Bridges through Fold Space.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004466

By:

Edwards, Hannah;
Deane, Charlotte M.

Publication type:

Article

Shaping Neuronal Network Activity by Presynaptic Mechanisms.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004438

By:

Lavi, Ayal;
Perez, Omri;
Ashery, Uri

Publication type:

Article

Dynamical Organization of Syntaxin-1A at the Presynaptic Active Zone.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004407

By:

Ullrich, Alexander;
Böhme, Mathias A.;
Schöneberg, Johannes;
Depner, Harald;
Sigrist, Stephan J.;
Noé, Frank

Publication type:

Article

Diversity Waves in Collapse-Driven Population Dynamics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004440

By:

Maslov, Sergei;
Sneppen, Kim

Publication type:

Article

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004478

By:

Galardini, Marco;
Brilli, Matteo;
Spini, Giulia;
Rossi, Matteo;
Roncaglia, Bianca;
Bani, Alessia;
Chiancianesi, Manuela;
Moretto, Marco;
Engelen, Kristof;
Bacci, Giovanni;
Pini, Francesco;
Biondi, Emanuele G.;
Bazzicalupo, Marco;
Mengoni, Alessio

Publication type:

Article

The Internal Dynamics of Fibrinogen and Its Implications for Coagulation and Adsorption.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004346

By:

Köhler, Stephan;
Schmid, Friederike;
Settanni, Giovanni

Publication type:

Article

Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004493

By:

Nichol, Daniel;
Jeavons, Peter;
Fletcher, Alexander G.;
Bonomo, Robert A.;
Maini, Philip K.;
Paul, Jerome L.;
Gatenby, Robert A.;
Anderson, Alexander R.A.;
Scott, Jacob G.

Publication type:

Article

Ten Simple Rules for a Computational Biologist’s Laboratory Notebook.

Published in:

2015

By:

Schnell, Santiago

Publication type:

Editorial

Social Feedback and the Emergence of Rank in Animal Society.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004411

By:

Hobson, Elizabeth A.;
DeDeo, Simon

Publication type:

Article

A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004497

By:

Cheng, Feixiong;
Liu, Chuang;
Lin, Chen-Ching;
Zhao, Junfei;
Jia, Peilin;
Li, Wen-Hsiung;
Zhao, Zhongming

Publication type:

Article

Prospective Optimization with Limited Resources.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004501

By:

Snider, Joseph;
Lee, Dongpyo;
Poizner, Howard;
Gepshtein, Sergei

Publication type:

Article

Increased Aggregation Is More Frequently Associated to Human Disease-Associated Mutations Than to Neutral Polymorphisms.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004374

By:

De Baets, Greet;
Van Doorn, Loic;
Rousseau, Frederic;
Schymkowitz, Joost

Publication type:

Article

A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004486

By:

Ortiz-Gutiérrez, Elizabeth;
García-Cruz, Karla;
Azpeitia, Eugenio;
Castillo, Aaron;
Sánchez, María de la Paz;
Álvarez-Buylla, Elena R.

Publication type:

Article

Metabolic Adaptation Processes That Converge to Optimal Biomass Flux Distributions.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004434

By:

Altafini, Claudio;
Facchetti, Giuseppe

Publication type:

Article

Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca<sup>2+</sup> Release Patterns in Cardiomyocytes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004417

By:

Rajagopal, Vijay;
Bass, Gregory;
Walker, Cameron G.;
Crossman, David J.;
Petzer, Amorita;
Hickey, Anthony;
Siekmann, Ivo;
Hoshijima, Masahiko;
Ellisman, Mark H.;
Crampin, Edmund J.;
Soeller, Christian

Publication type:

Article

Relating Alpha Power and Phase to Population Firing and Hemodynamic Activity Using a Thalamo-cortical Neural Mass Model.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004352

By:

Becker, Robert;
Knock, Stuart;
Ritter, Petra;
Jirsa, Viktor

Publication type:

Article

A Self-Organising Model of Thermoregulatory Huddling.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004283

By:

Glancy, Jonathan;
Groß, Roderich;
Stone, James V.;
Wilson, Stuart P.

Publication type:

Article

Self-organization in Balanced State Networks by STDP and Homeostatic Plasticity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004420

By:

Effenberger, Felix;
Jost, Jürgen;
Levina, Anna

Publication type:

Article

Explaining the Timing of Natural Scene Understanding with a Computational Model of Perceptual Categorization.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004456

By:

Sofer, Imri;
Crouzet, Sébastien M.;
Serre, Thomas

Publication type:

Article

An Emerging Allee Effect Is Critical for Tumor Initiation and Persistence.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004366

By:

Böttger, Katrin;
Hatzikirou, Haralambos;
Voss-Böhme, Anja;
Cavalcanti-Adam, Elisabetta Ada;
Herrero, Miguel A.;
Deutsch, Andreas

Publication type:

Article

ReproPhylo: An Environment for Reproducible Phylogenomics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004447

By:

Szitenberg, Amir;
John, Max;
Blaxter, Mark L.;
Lunt, David H.

Publication type:

Article

Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004470

By:

Clausen, Rudy;
Ma, Buyong;
Nussinov, Ruth;
Shehu, Amarda

Publication type:

Article

Scalability of Asynchronous Networks Is Limited by One-to-One Mapping between Effective Connectivity and Correlations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004490

By:

van Albada, Sacha Jennifer;
Helias, Moritz;
Diesmann, Markus

Publication type:

Article

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004441

By:

Wen, Jiayu;
Ladewig, Erik;
Shenker, Sol;
Mohammed, Jaaved;
Lai, Eric C.

Publication type:

Article

An Integrated Framework Advancing Membrane Protein Modeling and Design.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004398

By:

Alford, Rebecca F.;
Koehler Leman, Julia;
Weitzner, Brian D.;
Duran, Amanda M.;
Tilley, Drew C.;
Elazar, Assaf;
Gray, Jeffrey J.

Publication type:

Article

A Theory of Cheap Control in Embodied Systems.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004427

By:

Montúfar, Guido;
Ghazi-Zahedi, Keyan;
Ay, Nihat

Publication type:

Article