Works matching IS 1553734X AND DT 2015 AND VI 11 AND IP 12

Results: 67

Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004661

By:

Braun, Tatjana;
Koehler Leman, Julia;
Lange, Oliver F.

Publication type:

Article

Clustered Desynchronization from High-Frequency Deep Brain Stimulation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004673

By:

Wilson, Dan;
Moehlis, Jeff

Publication type:

Article

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004659

By:

Parra, R. Gonzalo;
Espada, Rocío;
Verstraete, Nina;
Ferreiro, Diego U.

Publication type:

Article

The Effect of Farmers’ Decisions on Pest Control with Bt Crops: A Billion Dollar Game of Strategy.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004483

By:

Milne, Alice E.;
Bell, James R.;
Hutchison, William D.;
van den Bosch, Frank;
Mitchell, Paul D.;
Crowder, David;
Parnell, Stephen;
Whitmore, Andrew P.

Publication type:

Article

Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004679

By:

Kursawe, Jochen;
Brodskiy, Pavel A.;
Zartman, Jeremiah J.;
Baker, Ruth E.;
Fletcher, Alexander G.

Publication type:

Article

Formation and Maintenance of Robust Long-Term Information Storage in the Presence of Synaptic Turnover.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004684

By:

Fauth, Michael;
Wörgötter, Florentin;
Tetzlaff, Christian

Publication type:

Article

Complete Firing-Rate Response of Neurons with Complex Intrinsic Dynamics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004636

By:

Puelma Touzel, Maximilian;
Wolf, Fred

Publication type:

Article

Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004613

By:

Hall, Matthew;
Woolhouse, Mark;
Rambaut, Andrew

Publication type:

Article

Modeling the Slow CD4+ T Cell Decline in HIV-Infected Individuals.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004665

By:

Wang, Sunpeng;
Hottz, Patricia;
Schechter, Mauro;
Rong, Libin

Publication type:

Article

A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004687

By:

Ohta, Naoyuki;
Waki, Kana;
Mochizuki, Atsushi;
Satou, Yutaka

Publication type:

Article

The Role of Symmetric Stem Cell Divisions in Tissue Homeostasis.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004629

By:

Yang, Jienian;
Plikus, Maksim V.;
Komarova, Natalia L.

Publication type:

Article

Distinctive Behaviors of Druggable Proteins in Cellular Networks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004597

By:

Mitsopoulos, Costas;
Schierz, Amanda C.;
Workman, Paul;
Al-Lazikani, Bissan

Publication type:

Article

Where’s the Noise? Key Features of Spontaneous Activity and Neural Variability Arise through Learning in a Deterministic Network.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004640

By:

Hartmann, Christoph;
Lazar, Andreea;
Nessler, Bernhard;
Triesch, Jochen

Publication type:

Article

Topological Phenotypes Constitute a New Dimension in the Phenotypic Space of Leaf Venation Networks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004680

By:

Ronellenfitsch, Henrik;
Lasser, Jana;
Daly, Douglas C.;
Katifori, Eleni

Publication type:

Article

How Obstacles Perturb Population Fronts and Alter Their Genetic Structure.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004615

By:

Möbius, Wolfram;
Murray, Andrew W.;
Nelson, David R.

Publication type:

Article

Multistability in Large Scale Models of Brain Activity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004644

By:

Golos, Mathieu;
Jirsa, Viktor;
Daucé, Emmanuel

Publication type:

Article

Cultured Cortical Neurons Can Perform Blind Source Separation According to the Free-Energy Principle.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004643

By:

Isomura, Takuya;
Kotani, Kiyoshi;
Jimbo, Yasuhiko

Publication type:

Article

Tamping Ramping: Algorithmic, Implementational, and Computational Explanations of Phasic Dopamine Signals in the Accumbens.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004622

By:

Lloyd, Kevin;
Dayan, Peter

Publication type:

Article

Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004500

By:

Ghosh, Soma;
Chandra, Nagasuma;
Vishveshwara, Saraswathi

Publication type:

Article

Coherent Motion of Monolayer Sheets under Confinement and Its Pathological Implications.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004670

By:

Soumya, S S;
Gupta, Animesh;
Cugno, Andrea;
Deseri, Luca;
Dayal, Kaushik;
Das, Dibyendu;
Sen, Shamik;
Inamdar, Mandar M.

Publication type:

Article

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004465

By:

Zhang, Wei;
Chang, Jae-Woong;
Lin, Lilong;
Minn, Kay;
Wu, Baolin;
Chien, Jeremy;
Yong, Jeongsik;
Zheng, Hui;
Kuang, Rui

Publication type:

Article

Elastohydrodynamics and Kinetics of Protein Patterning in the Immunological Synapse.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004481

By:

Carlson, Andreas;
Mahadevan, L.

Publication type:

Article

Correction: Cell Fate Reprogramming by Control of Intracellular Network Dynamics.

Published in:

2015

By:

null, null

Publication type:

Correction Notice

Defectors Can Create Conditions That Rescue Cooperation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004645

By:

Waite, Adam James;
Cannistra, Caroline;
Shou, Wenying

Publication type:

Article

The Essential Complexity of Auditory Receptive Fields.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004628

By:

Thorson, Ivar L.;
Liénard, Jean;
David, Stephen V.

Publication type:

Article

Sources of Variability in a Synthetic Gene Oscillator.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004674

By:

Veliz-Cuba, Alan;
Hirning, Andrew J.;
Atanas, Adam A.;
Hussain, Faiza;
Vancia, Flavia;
Josić, Krešimir;
Bennett, Matthew R.

Publication type:

Article

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004625

By:

Immonen, Taina T.;
Conway, Jessica M.;
Romero-Severson, Ethan O.;
Perelson, Alan S.;
Leitner, Thomas

Publication type:

Article

Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004580

By:

Laine, Elodie;
Carbone, Alessandra

Publication type:

Article

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004557

By:

Kaminski, James;
Gibson, Molly K.;
Franzosa, Eric A.;
Segata, Nicola;
Dantas, Gautam;
Huttenhower, Curtis

Publication type:

Article

Computer Simulations Imply Forelimb-Dominated Underwater Flight in Plesiosaurs.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004605

By:

Liu, Shiqiu;
Smith, Adam S.;
Gu, Yuting;
Tan, Jie;
Liu, C. Karen;
Turk, Greg

Publication type:

Article

Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004595

By:

Ruffalo, Matthew;
Koyutürk, Mehmet;
Sharan, Roded

Publication type:

Article

Biases in Visual, Auditory, and Audiovisual Perception of Space.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004649

By:

Odegaard, Brian;
Wozny, David R.;
Shams, Ladan

Publication type:

Article

Computational Identification of Mechanistic Factors That Determine the Timing and Intensity of the Inflammatory Response.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004460

By:

Nagaraja, Sridevi;
Reifman, Jaques;
Mitrophanov, Alexander Y.

Publication type:

Article

Modeling Fatty Acid Transfer from Artery to Cardiomyocyte.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004666

By:

Arts, Theo;
Reneman, Robert S.;
Bassingthwaighte, James B.;
van der Vusse, Ger J.

Publication type:

Article

A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004639

By:

Miao, Zhichao;
Westhof, Eric

Publication type:

Article

Text Mining for Protein Docking.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004630

By:

Badal, Varsha D.;
Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson’s Disease.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004609

By:

Pavlides, Alex;
Hogan, S. John;
Bogacz, Rafal

Publication type:

Article

Protein Connectivity in Chemotaxis Receptor Complexes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004650

By:

Eismann, Stephan;
Endres, Robert G.

Publication type:

Article

Dynamic Network Drivers of Seizure Generation, Propagation and Termination in Human Neocortical Epilepsy.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004608

By:

Khambhati, Ankit N.;
Davis, Kathryn A.;
Oommen, Brian S.;
Chen, Stephanie H.;
Lucas, Timothy H.;
Litt, Brian;
Bassett, Danielle S.

Publication type:

Article

A Functional Cartography of Cognitive Systems.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004533

By:

Mattar, Marcelo G.;
Cole, Michael W.;
Thompson-Schill, Sharon L.;
Bassett, Danielle S.

Publication type:

Article

Operational Principles for the Dynamics of the In Vitro ParA-ParB System.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004651

By:

Jindal, Lavisha;
Emberly, Eldon

Publication type:

Article

Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004584

By:

Mazzoni, Alberto;
Lindén, Henrik;
Cuntz, Hermann;
Lansner, Anders;
Panzeri, Stefano;
Einevoll, Gaute T.

Publication type:

Article

Simple Plans or Sophisticated Habits? State, Transition and Learning Interactions in the Two-Step Task.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004648

By:

Akam, Thomas;
Costa, Rui;
Dayan, Peter

Publication type:

Article

MIiSR: Molecular Interactions in Super-Resolution Imaging Enables the Analysis of Protein Interactions, Dynamics and Formation of Multi-protein Structures.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004634

By:

Caetano, Fabiana A.;
Dirk, Brennan S.;
Tam, Joshua H. K.;
Cavanagh, P. Craig;
Goiko, Maria;
Ferguson, Stephen S. G.;
Pasternak, Stephen H.;
Dikeakos, Jimmy D.;
de Bruyn, John R.;
Heit, Bryan

Publication type:

Article

The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004656

By:

Kamola, Piotr J.;
Nakano, Yuko;
Takahashi, Tomoko;
Wilson, Paul A.;
Ui-Tei, Kumiko

Publication type:

Article

Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004642

By:

Hutchings, Frances;
Han, Cheol E.;
Keller, Simon S.;
Weber, Bernd;
Taylor, Peter N.;
Kaiser, Marcus

Publication type:

Article

Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004631

By:

Ben Imeddourene, Akli;
Elbahnsi, Ahmad;
Guéroult, Marc;
Oguey, Christophe;
Foloppe, Nicolas;
Hartmann, Brigitte

Publication type:

Article

Locust Collective Motion and Its Modeling.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004522

By:

Ariel, Gil;
Ayali, Amir

Publication type:

Article

Model-Based Evaluation of Spontaneous Tumor Regression in Pilocytic Astrocytoma.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004662

By:

Buder, Thomas;
Deutsch, Andreas;
Klink, Barbara;
Voss-Böhme, Anja

Publication type:

Article

Morphological and Stress Vulnerability Indices for Human Coronary Plaques and Their Correlations with Cap Thickness and Lipid Percent: An IVUS-Based Fluid-Structure Interaction Multi-patient Study.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004652

By:

Wang, Liang;
Zheng, Jie;
Maehara, Akiko;
Yang, Chun;
Billiar, Kristen L.;
Wu, Zheyang;
Bach, Richard;
Muccigrosso, David;
Mintz, Gary S.;
Tang, Dalin

Publication type:

Article