Works matching IS 1553734X AND DT 2015 AND VI 11 AND IP 10

Results: 119

Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004530

By:

Heavner, Benjamin D.;
Price, Nathan D.

Publication type:

Article

Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004437

By:

Hindersin, Laura;
Traulsen, Arne

Publication type:

Article

Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004345

By:

Choubey, Sandeep;
Kondev, Jane;
Sanchez, Alvaro

Publication type:

Article

Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004473

By:

Cordero, Pablo;
Das, Rhiju

Publication type:

Article

The Encoding of Decision Difficulty and Movement Time in the Primate Premotor Cortex.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004502

By:

Martinez-Garcia, Marina;
Insabato, Andrea;
Pannunzi, Mario;
Pardo-Vazquez, Jose L.;
Acuña, Carlos;
Deco, Gustavo

Publication type:

Article

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004573

By:

Nayfach, Stephen;
Bradley, Patrick H.;
Wyman, Stacia K.;
Laurent, Timothy J.;
Williams, Alex;
Eisen, Jonathan A.;
Pollard, Katherine S.;
Sharpton, Thomas J.

Publication type:

Article

Improving Collective Estimations Using Resistance to Social Influence.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004594

By:

Madirolas, Gabriel;
de Polavieja, Gonzalo G.

Publication type:

Article

Lévy Walks Suboptimal under Predation Risk.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004601

By:

Abe, Masato S.;
Shimada, Masakazu

Publication type:

Article

Regulation of Spatiotemporal Patterns by Biological Variability: General Principles and Applications to Dictyostelium discoideum.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004367

By:

Grace, Miriam;
Hütt, Marc-Thorsten

Publication type:

Article

Dynamic Redox Regulation of IL-4 Signaling.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004582

By:

Dwivedi, Gaurav;
Gran, Margaret A.;
Bagchi, Pritha;
Kemp, Melissa L.

Publication type:

Article

Neuromechanistic Model of Auditory Bistability.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004555

By:

Rankin, James;
Sussman, Elyse;
Rinzel, John

Publication type:

Article

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004590

By:

Svetlichnyy, Dmitry;
Imrichova, Hana;
Fiers, Mark;
Kalender Atak, Zeynep;
Aerts, Stein

Publication type:

Article

A Quantitative Model of the GIRK1/2 Channel Reveals That Its Basal and Evoked Activities Are Controlled by Unequal Stoichiometry of Gα and Gβγ.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004598

By:

Yakubovich, Daniel;
Berlin, Shai;
Kahanovitch, Uri;
Rubinstein, Moran;
Farhy-Tselnicker, Isabella;
Styr, Boaz;
Keren-Raifman, Tal;
Dessauer, Carmen W.;
Dascal, Nathan

Publication type:

Article

Network Events on Multiple Space and Time Scales in Cultured Neural Networks and in a Stochastic Rate Model.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004547

By:

Gigante, Guido;
Deco, Gustavo;
Marom, Shimon;
Del Giudice, Paolo

Publication type:

Article

Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004505

By:

Nim, Tri Hieu;
Luo, Le;
White, Jacob K.;
Clément, Marie-Véronique;
Tucker-Kellogg, Lisa

Publication type:

Article

An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004569

By:

Hong, Tian;
Watanabe, Kazuhide;
Ta, Catherine Ha;
Villarreal-Ponce, Alvaro;
Nie, Qing;
Dai, Xing

Publication type:

Article

The Elementary Operations of Human Vision Are Not Reducible to Template-Matching.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004499

By:

Neri, Peter

Publication type:

Article

A Kinetic Platform to Determine the Fate of Hydrogen Peroxide in Escherichia coli.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004562

By:

Adolfsen, Kristin J.;
Brynildsen, Mark P.

Publication type:

Article

From Sensory Signals to Modality-Independent Conceptual Representations: A Probabilistic Language of Thought Approach.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004610

By:

Erdogan, Goker;
Yildirim, Ilker;
Jacobs, Robert A.

Publication type:

Article

A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent “Heterosynaptic” LTD in the Dentate Gyrus In Vivo.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004588

By:

Jedlicka, Peter;
Benuskova, Lubica;
Abraham, Wickliffe C.

Publication type:

Article

Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004603

By:

Kumar, M. Senthil;
Plotkin, Joshua B.;
Hannenhalli, Sridhar

Publication type:

Article

Mechanism of Focal Adhesion Kinase Mechanosensing.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004593

By:

Zhou, Jing;
Aponte-Santamaría, Camilo;
Sturm, Sebastian;
Bullerjahn, Jakob Tómas;
Bronowska, Agnieszka;
Gräter, Frauke

Publication type:

Article

On the Adjacency Matrix of RyR2 Cluster Structures.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004521

By:

Walker, Mark A.;
Kohl, Tobias;
Lehnart, Stephan E.;
Greenstein, Joseph L.;
Lederer, W. J.;
Winslow, Raimond L.

Publication type:

Article

Learning to Estimate Dynamical State with Probabilistic Population Codes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004554

By:

Makin, Joseph G.;
Dichter, Benjamin K.;
Sabes, Philip N.

Publication type:

Article

Network Plasticity as Bayesian Inference.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004485

By:

Kappel, David;
Habenschuss, Stefan;
Legenstein, Robert;
Maass, Wolfgang

Publication type:

Article

Bayesian Estimation of Conditional Independence Graphs Improves Functional Connectivity Estimates.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004534

By:

Hinne, Max;
Janssen, Ronald J.;
Heskes, Tom;
van Gerven, Marcel A.J.

Publication type:

Article

A Unifying Probabilistic View of Associative Learning.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004567

By:

Gershman, Samuel J.

Publication type:

Article

Neural Sequence Generation Using Spatiotemporal Patterns of Inhibition.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004581

By:

Cannon, Jonathan;
Kopell, Nancy;
Gardner, Timothy;
Markowitz, Jeffrey

Publication type:

Article

Direct Measurements of Local Coupling between Myosin Molecules Are Consistent with a Model of Muscle Activation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004599

By:

Walcott, Sam;
Kad, Neil M.

Publication type:

Article

FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants.

Published in:

2015

By:

Bednar, David;
Beerens, Koen;
Sebestova, Eva;
Bendl, Jaroslav;
Khare, Sagar;
Chaloupkova, Radka;
Prokop, Zbynek;
Brezovsky, Jan;
Baker, David;
Damborsky, Jiri

Publication type:

Product Review

Parallel Representation of Value-Based and Finite State-Based Strategies in the Ventral and Dorsal Striatum.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004540

By:

Ito, Makoto;
Doya, Kenji

Publication type:

Article

Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004571

By:

Cohen, David P. A.;
Martignetti, Loredana;
Robine, Sylvie;
Barillot, Emmanuel;
Zinovyev, Andrei;
Calzone, Laurence

Publication type:

Article

Extracting Diffusive States of Rho GTPase in Live Cells: Towards In Vivo Biochemistry.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004297

By:

Koo, Peter K.;
Weitzman, Matthew;
Sabanaygam, Chandran R.;
van Golen, Kenneth L.;
Mochrie, Simon G. J.

Publication type:

Article

ApoE4-specific Misfolded Intermediate Identified by Molecular Dynamics Simulations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004359

By:

Williams II, Benfeard;
Convertino, Marino;
Das, Jhuma;
Dokholyan, Nikolay V.

Publication type:

Article

Deconstructing Interocular Suppression: Attention and Divisive Normalization.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004510

By:

Li, Hsin-Hung;
Carrasco, Marisa;
Heeger, David J.

Publication type:

Article

Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004579

By:

Vestergaard, Christian L.;
Génois, Mathieu

Publication type:

Article

Emergence of Shared Intentionality Is Coupled to the Advance of Cumulative Culture.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004587

By:

Angus, Simon D.;
Newton, Jonathan

Publication type:

Article

Doubly Bayesian Analysis of Confidence in Perceptual Decision-Making.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004519

By:

Aitchison, Laurence;
Bang, Dan;
Bahrami, Bahador;
Latham, Peter E.

Publication type:

Article

Computational Methods for Exploration and Analysis of Macromolecular Structure and Dynamics.

Published in:

2015

By:

Shehu, Amarda;
Nussinov, Ruth

Publication type:

Editorial

Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004550

By:

Delgado-SanMartin, Juan A.;
Hare, Jennifer I.;
de Moura, Alessandro P. S.;
Yates, James W. T.

Publication type:

Article

Dendritic Pooling of Noisy Threshold Processes Can Explain Many Properties of a Collision-Sensitive Visual Neuron.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004479

By:

Keil, Matthias S.

Publication type:

Article

Membrane Mechanics of Endocytosis in Cells with Turgor.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004538

By:

Dmitrieff, Serge;
Nédélec, François

Publication type:

Article

The Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004444

By:

Singhal, Kushagra;
Vreede, Jocelyne;
Mashaghi, Alireza;
Tans, Sander J.;
Bolhuis, Peter G.

Publication type:

Article

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004435

By:

Kukic, Predrag;
Kannan, Arvind;
Dijkstra, Maurits J. J.;
Abeln, Sanne;
Camilloni, Carlo;
Vendruscolo, Michele

Publication type:

Article

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004461

By:

Soner, Seren;
Ozbek, Pemra;
Garzon, Jose Ignacio;
Ben-Tal, Nir;
Haliloglu, Turkan

Publication type:

Article

Parsimonious Model of Vascular Patterning Links Transverse Hormone Fluxes to Lateral Root Initiation: Auxin Leads the Way, while Cytokinin Levels Out.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004450

By:

el-Showk, Sedeer;
Help-Rinta-Rahko, Hanna;
Blomster, Tiina;
Siligato, Riccardo;
Marée, Athanasius F. M.;
Mähönen, Ari Pekka;
Grieneisen, Verônica A.

Publication type:

Article

Combining Search, Social Media, and Traditional Data Sources to Improve Influenza Surveillance.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004513

By:

Santillana, Mauricio;
Nguyen, André T.;
Dredze, Mark;
Paul, Michael J.;
Nsoesie, Elaine O.;
Brownstein, John S.

Publication type:

Article

Relating Cortical Atrophy in Temporal Lobe Epilepsy with Graph Diffusion-Based Network Models.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004564

By:

Abdelnour, Farras;
Mueller, Susanne;
Raj, Ashish

Publication type:

Article

Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004546

By:

Tyagi, Nidhi;
Farnell, Edward J;
Fitzsimmons, Colin M;
Ryan, Stephanie;
Tukahebwa, Edridah;
Maizels, Rick M;
Dunne, David W;
Thornton, Janet M;
Furnham, Nicholas

Publication type:

Article

Structural Insights into Separase Architecture and Substrate Recognition through Computational Modelling of Caspase-Like and Death Domains.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004548

By:

Winter, Anja;
Schmid, Ralf;
Bayliss, Richard

Publication type:

Article