Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 8

Results: 54

Correction: Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model.

Published in:: 2014
Publication type:: Correction Notice

Correction: A Computational Model of the Fetal Circulation to Quantify Blood Redistribution in Intrauterine Growth Restriction.

Published in:: 2014
Publication type:: Correction Notice

Correction: The Self-Limiting Dynamics of TGF-β Signaling In Silico and In Vitro, with Negative Feedback through PPM1A Upregulation.

Published in:: 2014
Publication type:: Correction Notice

Correction: Exploration of the Dynamic Properties of Protein Complexes Predicted from Spatially Constrained Protein-Protein Interaction Networks.

Published in:: 2014
Publication type:: Correction Notice

Unbiased Functional Clustering of Gene Variants with a Phenotypic-Linkage Network.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003815

By:

Honti, Frantisek;
Meader, Stephen;
Webber, Caleb

Publication type:

Article

Protein Surface Softness Is the Origin of Enzyme Cold-Adaptation of Trypsin.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003813

By:

Isaksen, Geir Villy;
Åqvist, Johan;
Brandsdal, Bjørn Olav

Publication type:

Article

Communication through Resonance in Spiking Neuronal Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003811

By:

Hahn, Gerald;
Bujan, Alejandro F.;
Frégnac, Yves;
Aertsen, Ad;
Kumar, Arvind

Publication type:

Article

Modeling of the Dorsal Gradient across Species Reveals Interaction between Embryo Morphology and Toll Signaling Pathway during Evolution.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003807

By:

Ambrosi, Priscilla;
Chahda, Juan Sebastian;
Koslen, Hannah R.;
Chiel, Hillel J.;
Mizutani, Claudia Mieko

Publication type:

Article

VASP-E: Specificity Annotation with a Volumetric Analysis of Electrostatic Isopotentials.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003792

By:

Chen, Brian Y.

Publication type:

Article

The Protective Role of Symmetric Stem Cell Division on the Accumulation of Heritable Damage.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003802

By:

McHale, Peter T.;
Lander, Arthur D.

Publication type:

Article

Classical Mathematical Models for Description and Prediction of Experimental Tumor Growth.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003800

By:

Benzekry, Sébastien;
Lamont, Clare;
Beheshti, Afshin;
Tracz, Amanda;
Ebos, John M. L.;
Hlatky, Lynn;
Hahnfeldt, Philip

Publication type:

Article

Possible Role of Interleukin-1β in Type 2 Diabetes Onset and Implications for Anti-inflammatory Therapy Strategies.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003798

By:

Zhao, Gang;
Dharmadhikari, Gitanjali;
Maedler, Kathrin;
Meyer-Hermann, Michael

Publication type:

Article

Sparsity and Compressed Coding in Sensory Systems.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003793

By:

Barranca, Victor J.;
Kovačič, Gregor;
Zhou, Douglas;
Cai, David

Publication type:

Article

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003806

By:

Finak, Greg;
Frelinger, Jacob;
Jiang, Wenxin;
Newell, Evan W.;
Ramey, John;
Davis, Mark M.;
Kalams, Spyros A.;
De Rosa, Stephen C.;
Gottardo, Raphael

Publication type:

Article

A New Model for Pore Formation by Cholesterol-Dependent Cytolysins.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003791

By:

Reboul, Cyril F.;
Whisstock, James C.;
Dunstone, Michelle A.

Publication type:

Article

MODMatcher: Multi-Omics Data Matcher for Integrative Genomic Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003790

By:

Yoo, Seungyeul;
Huang, Tao;
Campbell, Joshua D.;
Lee, Eunjee;
Tu, Zhidong;
Geraci, Mark W.;
Powell, Charles A.;
Schadt, Eric E.;
Spira, Avrum;
Zhu, Jun

Publication type:

Article

Ten Simple Rules of Live Tweeting at Scientific Conferences.

Published in:

2014

By:

Ekins, Sean;
Perlstein, Ethan O.

Publication type:

Editorial

Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model.

Published in:

2014

By:

van Tonder, Andries J.;
Mistry, Shilan;
Bray, James E.;
Hill, Dorothea M. C.;
Cody, Alison J.;
Farmer, Chris L.;
Klugman, Keith P.;
von Gottberg, Anne;
Bentley, Stephen D.;
Parkhill, Julian;
Jolley, Keith A.;
Maiden, Martin C. J.;
Brueggemann, Angela B.

Publication type:

Case Study

Dynamic Mechanisms of Neocortical Focal Seizure Onset.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003787

By:

Wang, Yujiang;
Goodfellow, Marc;
Taylor, Peter Neal;
Baier, Gerold

Publication type:

Article

Making Biomolecular Simulations Accessible in the Post-Nobel Prize Era.

Published in:

2014

By:

Cui, Qiang;
Nussinov, Ruth

Publication type:

Editorial

Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003778

By:

Bitbol, Anne-Florence;
Schwab, David J.

Publication type:

Article

Kinetic Memory Based on the Enzyme-Limited Competition.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003784

By:

Hatakeyama, Tetsuhiro S.;
Kaneko, Kunihiko

Publication type:

Article

Specificity and Affinity Quantification of Flexible Recognition from Underlying Energy Landscape Topography.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003782

By:

Chu, Xiakun;
Wang, Jin

Publication type:

Article

Logarithmic and Power Law Input-Output Relations in Sensory Systems with Fold-Change Detection.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003781

By:

Adler, Miri;
Mayo, Avi;
Alon, Uri

Publication type:

Article

Phenotypic Robustness and the Assortativity Signature of Human Transcription Factor Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003780

By:

Pechenick, Dov A.;
Payne, Joshua L.;
Moore, Jason H.

Publication type:

Article

Optimal Behavioral Hierarchy.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003779

By:

Solway, Alec;
Diuk, Carlos;
Córdova, Natalia;
Yee, Debbie;
Barto, Andrew G.;
Niv, Yael;
Botvinick, Matthew M.

Publication type:

Article

A Deterministic Model Predicts the Properties of Stochastic Calcium Oscillations in Airway Smooth Muscle Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003783

By:

Cao, Pengxing;
Tan, Xiahui;
Donovan, Graham;
Sanderson, Michael J.;
Sneyd, James

Publication type:

Article

Construction and Validation of a Regulatory Network for Pluripotency and Self-Renewal of Mouse Embryonic Stem Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003777

By:

Xu, Huilei;
Ang, Yen-Sin;
Sevilla, Ana;
Lemischka, Ihor R.;
Ma'ayan, Avi

Publication type:

Article

The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003776

By:

Mann, Jaclyn K.;
Barton, John P.;
Ferguson, Andrew L.;
Omarjee, Saleha;
Walker, Bruce D.;
Chakraborty, Arup;
Ndung'u, Thumbi

Publication type:

Article

Spatially Distributed Dendritic Resonance Selectively Filters Synaptic Input.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003775

By:

Laudanski, Jonathan;
Torben-Nielsen, Benjamin;
Segev, Idan;
Shamma, Shihab

Publication type:

Article

Mechanical Cell-Matrix Feedback Explains Pairwise and Collective Endothelial Cell Behavior In Vitro.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003774

By:

van Oers, René F. M.;
Rens, Elisabeth G.;
LaValley, Danielle J.;
Reinhart-King, Cynthia A.;
Merks, Roeland M. H.

Publication type:

Article

Unveiling Time in Dose-Response Models to Infer Host Susceptibility to Pathogens.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003773

By:

Pessoa, Delphine;
Souto-Maior, Caetano;
Gjini, Erida;
Lopes, Joao S.;
Ceña, Bruno;
Codeço, Cláudia T.;
Gomes, M. Gabriela M.

Publication type:

Article

Modeling Viral Evolutionary Dynamics after Telaprevir-Based Treatment.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003772

By:

Haseltine, Eric L.;
De Meyer, Sandra;
Dierynck, Inge;
Bartels, Doug J.;
Ghys, Anne;
Davis, Andrew;
Zhang, Eileen Z.;
Tigges, Ann M.;
Spanks, Joan;
Picchio, Gaston;
Kieffer, Tara L.;
Sullivan, James C.

Publication type:

Article

Tracing the Evolution of Lineage-Specific Transcription Factor Binding Sites in a Birth-Death Framework.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003771

By:

Yokoyama, Ken Daigoro;
Zhang, Yang;
Ma, Jian

Publication type:

Article

Top-Down Inputs Enhance Orientation Selectivity in Neurons of the Primary Visual Cortex during Perceptual Learning.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003770

By:

Moldakarimov, Samat;
Bazhenov, Maxim;
Sejnowski, Terrence J.

Publication type:

Article

A Hepatitis C Virus Infection Model with Time-Varying Drug Effectiveness: Solution and Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003769

By:

Conway, Jessica M.;
Perelson, Alan S.

Publication type:

Article

The Upside of Failure: How Regional Student Groups Learn from Their Mistakes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003768

By:

Mishra, Tarun;
Parra, R. Gonzalo;
Abeel, Thomas

Publication type:

Article

Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003767

By:

Gu, Shuo;
Silva, Daniel-Adriano;
Meng, Luming;
Yue, Alexander;
Huang, Xuhui

Publication type:

Article

Cost-Effective Control of Plant Disease When Epidemiological Knowledge Is Incomplete: Modelling Bahia Bark Scaling of Citrus.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003753

By:

Cunniffe, Nik J.;
Laranjeira, Francisco F.;
Neri, Franco M.;
DeSimone, R. Erik;
Gilligan, Christopher A.

Publication type:

Article

Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003752

By:

Textor, Johannes;
Henrickson, Sarah E.;
Mandl, Judith N.;
von Andrian, Ulrich H.;
Westermann, Jürgen;
de Boer, Rob J.;
Beltman, Joost B.

Publication type:

Article

A Simple Model of Optimal Population Coding for Sensory Systems.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003761

By:

Doi, Eizaburo;
Lewicki, Michael S.

Publication type:

Article

Bursts and Heavy Tails in Temporal and Sequential Dynamics of Foraging Decisions.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003759

By:

Jung, Kanghoon;
Jang, Hyeran;
Kralik, Jerald D.;
Jeong, Jaeseung

Publication type:

Article

Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003756

By:

Chou, Fang-Chieh;
Lipfert, Jan;
Das, Rhiju

Publication type:

Article

Identification of Allelic Imbalance with a Statistical Model for Subtle Genomic Mosaicism.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003765

By:

Xia, Rui;
Vattathil, Selina;
Scheet, Paul

Publication type:

Article

Collective Learning and Optimal Consensus Decisions in Social Animal Groups.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003762

By:

Kao, Albert B.;
Miller, Noam;
Torney, Colin;
Hartnett, Andrew;
Couzin, Iain D.

Publication type:

Article

Dynamic Modelling of Pathways to Cellular Senescence Reveals Strategies for Targeted Interventions.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003728

By:

Dalle Pezze, Piero;
Nelson, Glyn;
Otten, Elsje G.;
Korolchuk, Viktor I.;
Kirkwood, Thomas B. L.;
von Zglinicki, Thomas;
Shanley, Daryl P.

Publication type:

Article

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003665

By:

Miller, Christopher A.;
White, Brian S.;
Dees, Nathan D.;
Griffith, Malachi;
Welch, John S.;
Griffith, Obi L.;
Vij, Ravi;
Tomasson, Michael H.;
Graubert, Timothy A.;
Walter, Matthew J.;
Ellis, Matthew J.;
Schierding, William;
DiPersio, John F.;
Ley, Timothy J.;
Mardis, Elaine R.;
Wilson, Richard K.;
Ding, Li

Publication type:

Article

Memory Capacity of Networks with Stochastic Binary Synapses.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003727

By:

Dubreuil, Alexis M.;
Amit, Yali;
Brunel, Nicolas

Publication type:

Article

Unsupervised Feature Learning Improves Prediction of Human Brain Activity in Response to Natural Images.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003724

By:

Güçlü, Umut;
van Gerven, Marcel A. J.

Publication type:

Article

Large Scale Characterization of the LC13 TCR and HLA-B8 Structural Landscape in Reaction to 172 Altered Peptide Ligands: A Molecular Dynamics Simulation Study.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003748

By:

Knapp, Bernhard;
Dunbar, James;
Deane, Charlotte M.

Publication type:

Article