Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 6

Results: 51

Limits of Feedback Control in Bacterial Chemotaxis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003694

By:

Dufour, Yann S.;
Fu, Xiongfei;
Hernandez-Nunez, Luis;
Emonet, Thierry

Publication type:

Article

Correction: Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria.

Published in:: 2014
Publication type:: Correction Notice

Correction: Impact of Different Oseltamivir Regimens on Treating Influenza A Virus Infection and Resistance Emergence: Insights from a Modelling Study.

Published in:: 2014
Publication type:: Correction Notice

Correction: Collective Cell Motion in an Epithelial Sheet Can be Quantitatively Described by a Stochastic Interacting Particle Model.

Published in:: 2014
Publication type:: Correction Notice

Genome-Wide Prediction and Validation of Peptides That Bind Human Prosurvival Bcl-2 Proteins.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003693

By:

DeBartolo, Joe;
Taipale, Mikko;
Keating, Amy E.

Publication type:

Article

Yeast Mating and Image-Based Quantification of Spatial Pattern Formation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003690

By:

Diener, Christian;
Schreiber, Gabriele;
Giese, Wolfgang;
del Rio, Gabriel;
Schröder, Andreas;
Klipp, Edda

Publication type:

Article

Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003687

By:

Javaheri, Narjes;
Dries, Roland;
Kaandorp, Jaap

Publication type:

Article

Optimal Reaction Coordinate as a Biomarker for the Dynamics of Recovery from Kidney Transplant.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003685

By:

Krivov, Sergei V.;
Fenton, Hayley;
Goldsmith, Paul J.;
Prasad, Rajendra K.;
Fisher, Julie;
Paci, Emanuele

Publication type:

Article

A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003670

By:

Castro-González, Carlos;
Luengo-Oroz, Miguel A.;
Duloquin, Louise;
Savy, Thierry;
Rizzi, Barbara;
Desnoulez, Sophie;
Doursat, René;
Kergosien, Yannick L.;
Ledesma-Carbayo, María J.;
Bourgine, Paul;
Peyriéras, Nadine;
Santos, Andrés

Publication type:

Article

Interplay between Chaperones and Protein Disorder Promotes the Evolution of Protein Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003674

By:

Pechmann, Sebastian;
Frydman, Judith

Publication type:

Article

International Society for Computational Biology Honors Dana Pe'er with Top Bioinformatics/Computational Biology Award for 2014.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003682

By:

Fogg, Christiana N.;
Kovats, Diane E.

Publication type:

Article

Computational Modeling of Allosteric Regulation in the Hsp90 Chaperones: A Statistical Ensemble Analysis of Protein Structure Networks and Allosteric Communications.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003679

By:

Blacklock, Kristin;
Verkhivker, Gennady M.

Publication type:

Article

Identifying Crucial Parameter Correlations Maintaining Bursting Activity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003678

By:

Doloc-Mihu, Anca;
Calabrese, Ronald L.

Publication type:

Article

Integrating Diverse Datasets Improves Developmental Enhancer Prediction.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003677

By:

Erwin, Genevieve D.;
Oksenberg, Nir;
Truty, Rebecca M.;
Kostka, Dennis;
Murphy, Karl K.;
Ahituv, Nadav;
Pollard, Katherine S.;
Capra, John A.

Publication type:

Article

A Quantitative Comparison of Anti-HIV Gene Therapy Delivered to Hematopoietic Stem Cells versus CD4+ T Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003681

By:

Savkovic, Borislav;
Nichols, James;
Birkett, Donald;
Applegate, Tanya;
Ledger, Scott;
Symonds, Geoff;
Murray, John M.

Publication type:

Article

Large-Scale Genomic Analysis Suggests a Neutral Punctuated Dynamics of Transposable Elements in Bacterial Genomes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003680

By:

Iranzo, Jaime;
Gómez, Manuel J.;
López de Saro, Francisco J.;
Manrubia, Susanna

Publication type:

Article

An HIV Epidemic Model Based on Viral Load Dynamics: Value in Assessing Empirical Trends in HIV Virulence and Community Viral Load.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003673

By:

Herbeck, Joshua T.;
Mittler, John E.;
Gottlieb, Geoffrey S.;
Mullins, James I.

Publication type:

Article

Behaviors and Strategies of Bacterial Navigation in Chemical and Nonchemical Gradients.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003672

By:

Hu, Bo;
Tu, Yuhai

Publication type:

Article

Comparison of REST Cistromes across Human Cell Types Reveals Common and Context-Specific Functions.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003671

By:

Rockowitz, Shira;
Lien, Wen-Hui;
Pedrosa, Erika;
Wei, Gang;
Lin, Mingyan;
Zhao, Keji;
Lachman, Herbert M.;
Fuchs, Elaine;
Zheng, Deyou

Publication type:

Article

CGBayesNets: Conditional Gaussian Bayesian Network Learning and Inference with Mixed Discrete and Continuous Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003676

By:

McGeachie, Michael J.;
Chang, Hsun-Hsien;
Weiss, Scott T.

Publication type:

Article

A Scalable Computational Framework for Establishing Long-Term Behavior of Stochastic Reaction Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003669

By:

Gupta, Ankit;
Briat, Corentin;
Khammash, Mustafa

Publication type:

Article

Optimal Sampling Strategies for Detecting Zoonotic Disease Epidemics.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003668

By:

Ferguson, Jake M.;
Langebrake, Jessica B.;
Cannataro, Vincent L.;
Garcia, Andres J.;
Hamman, Elizabeth A.;
Martcheva, Maia;
Osenberg, Craig W.

Publication type:

Article

A Computational Model of the Fetal Circulation to Quantify Blood Redistribution in Intrauterine Growth Restriction.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003667

By:

Garcia-Canadilla, Patricia;
Rudenick, Paula A.;
Crispi, Fatima;
Cruz-Lemini, Monica;
Palau, Georgina;
Camara, Oscar;
Gratacos, Eduard;
Bijens, Bart H.

Publication type:

Article

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003666

By:

Chen, Guocai;
Cairelli, Michael J.;
Kilicoglu, Halil;
Shin, Dongwook;
Rindflesch, Thomas C.

Publication type:

Article

A New Online Computational Biology Curriculum.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003662

By:

Searls, David B.

Publication type:

Article

An Expanded Notch-Delta Model Exhibiting Long-Range Patterning and Incorporating MicroRNA Regulation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003655

By:

Chen, Jerry S.;
Gumbayan, Abygail M.;
Zeller, Robert W.;
Mahaffy, Joseph M.

Publication type:

Article

Unsupervised Learning of Cone Spectral Classes from Natural Images.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003652

By:

Benson, Noah C.;
Manning, Jeremy R.;
Brainard, David H.

Publication type:

Article

The Effects of Theta Precession on Spatial Learning and Simplicial Complex Dynamics in a Topological Model of the Hippocampal Spatial Map.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003651

By:

Arai, Mamiko;
Brandt, Vicky;
Dabaghian, Yuri

Publication type:

Article

Model Selection in Systems Biology Depends on Experimental Design.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003650

By:

Silk, Daniel;
Kirk, Paul D. W.;
Barnes, Chris P.;
Toni, Tina;
Stumpf, Michael P. H.

Publication type:

Article

An HMM-Based Comparative Genomic Framework for Detecting Introgression in Eukaryotes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003649

By:

Liu, Kevin J.;
Dai, Jingxuan;
Truong, Kathy;
Song, Ying;
Kohn, Michael H.;
Nakhleh, Luay

Publication type:

Article

On the Origins of Suboptimality in Human Probabilistic Inference.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003661

By:

Acerbi, Luigi;
Vijayakumar, Sethu;
Wolpert, Daniel M.

Publication type:

Article

Ten Simple Rules for Approaching a New Job.

Published in:

2014

By:

Bourne, Philip E.

Publication type:

Editorial

Protein Conservation and Variation Suggest Mechanisms of Cell Type-Specific Modulation of Signaling Pathways.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003659

By:

Schaefer, Martin H.;
Yang, Jae-Seong;
Serrano, Luis;
Kiel, Christina

Publication type:

Article

Optimizing Metabolite Production Using Periodic Oscillations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003658

By:

Sowa, Steven W.;
Baldea, Michael;
Contreras, Lydia M.

Publication type:

Article

Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003657

By:

Kuhn, Michael;
Hyman, Anthony A.;
Beyer, Andreas

Publication type:

Article

Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003656

By:

Töpfer, Nadine;
Scossa, Federico;
Fernie, Alisdair;
Nikoloski, Zoran

Publication type:

Article

Place Cell Rate Remapping by CA3 Recurrent Collaterals.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003648

By:

Solstad, Trygve;
Yousif, Hosam N.;
Sejnowski, Terrence J.

Publication type:

Article

Quantification of HTLV-1 Clonality and TCR Diversity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003646

By:

Laydon, Daniel J.;
Melamed, Anat;
Sim, Aaron;
Gillet, Nicolas A.;
Sim, Kathleen;
Darko, Sam;
Kroll, J. Simon;
Douek, Daniel C.;
Price, David A.;
Bangham, Charles R. M.;
Asquith, Becca

Publication type:

Article

Negative Example Selection for Protein Function Prediction: The NoGO Database.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003644

By:

Youngs, Noah;
Penfold-Brown, Duncan;
Bonneau, Richard;
Shasha, Dennis

Publication type:

Article

A Normative Theory of Forgetting: Lessons from the Fruit Fly.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003640

By:

Brea, Johanni;
Urbanczik, Robert;
Senn, Walter

Publication type:

Article

Spatial Transmission of 2009 Pandemic Influenza in the US.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003635

By:

Gog, Julia R.;
Ballesteros, Sébastien;
Viboud, Cécile;
Simonsen, Lone;
Bjornstad, Ottar N.;
Shaman, Jeffrey;
Chao, Dennis L.;
Khan, Farid;
Grenfell, Bryan T.

Publication type:

Article

Comparative Analysis of Human Tissue Interactomes Reveals Factors Leading to Tissue-Specific Manifestation of Hereditary Diseases.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003632

By:

Barshir, Ruth;
Shwartz, Omer;
Smoly, Ilan Y.;
Yeger-Lotem, Esti

Publication type:

Article

A Novel Cell Traction Force Microscopy to Study Multi-Cellular System.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003631

By:

Tang, Xin;
Tofangchi, Alireza;
Anand, Sandeep V.;
Saif, Taher A.

Publication type:

Article

Messages Do Diffuse Faster than Messengers: Reconciling Disparate Estimates of the Morphogen Bicoid Diffusion Coefficient.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003629

By:

Sigaut, Lorena;
Pearson, John E.;
Colman-Lerner, Alejandro;
Ponce Dawson, Silvina

Publication type:

Article

<i>AprioriGWAS</i>, a New Pattern Mining Strategy for Detecting Genetic Variants Associated with Disease through Interaction Effects.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003627

By:

Zhang, Qingrun;
Long, Quan;
Ott, Jurg

Publication type:

Article

Pierced Lasso Bundles Are a New Class of Knot-like Motifs.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003613

By:

Haglund, Ellinor;
Sulkowska, Joanna I.;
Noel, Jeffrey K.;
Lammert, Heiko;
Onuchic, José N.;
Jennings, Patricia A.

Publication type:

Article

Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003611

By:

Podlaha, Ondrej;
De, Subhajyoti;
Gonen, Mithat;
Michor, Franziska

Publication type:

Article

Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE).

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003610

By:

Shem-Tov, Doron;
Halperin, Eran

Publication type:

Article

Mechanistic, Mathematical Model to Predict the Dynamics of Tissue Genesis in Bone Defects via Mechanical Feedback and Mediation of Biochemical Factors.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003604

By:

Moore, Shannon R.;
Saidel, Gerald M.;
Knothe, Ulf;
Knothe Tate, Melissa L.

Publication type:

Article

A Unifying Mechanistic Model of Selective Attention in Spiking Neurons.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003577

By:

Bobier, Bruce;
Stewart, Terrence C.;
Eliasmith, Chris

Publication type:

Article