Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 12

Results: 55

Correction: Limits of Feedback Control in Bacterial Chemotaxis.

Published in:

2014

By:

null, null

Publication type:

Correction Notice

Correction: Cell Type Specific Alterations in Interchromosomal Networks across the Cell Cycle.

Published in:

2014

By:

null, null

Publication type:

Correction Notice

Correction: Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features.

Published in:

2014

By:

null, null

Publication type:

Correction Notice

Protein-Protein Docking with Dynamic Residue Protonation States.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004018

By:

Kilambi, Krishna Praneeth;
Reddy, Kavan;
Gray, Jeffrey J.

Publication type:

Article

Metadynamics Simulations Reveal a Na+ Independent Exiting Path of Galactose for the Inward-Facing Conformation of vSGLT.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004017

By:

Bisha, Ina;
Rodriguez, Alex;
Laio, Alessandro;
Magistrato, Alessandra

Publication type:

Article

A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004016

By:

Medema, Marnix H.;
Cimermancic, Peter;
Sali, Andrej;
Takano, Eriko;
Fischbach, Michael A.

Publication type:

Article

Bilinearity in Spatiotemporal Integration of Synaptic Inputs.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004014

By:

Li, Songting;
Liu, Nan;
Zhang, Xiao-hui;
Zhou, Douglas;
Cai, David

Publication type:

Article

Disrupted Calcium Release as a Mechanism for Atrial Alternans Associated with Human Atrial Fibrillation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004011

By:

Chang, Kelly C.;
Bayer, Jason D.;
Trayanova, Natalia A.

Publication type:

Article

Exploring O2 Diffusion in A-Type Cytochrome c Oxidases: Molecular Dynamics Simulations Uncover Two Alternative Channels towards the Binuclear Site.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004010

By:

Oliveira, A. Sofia F.;
Damas, João M.;
Baptista, António M.;
Soares, Cláudio M.

Publication type:

Article

Competing ParA Structures Space Bacterial Plasmids Equally over the Nucleoid.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004009

By:

Ietswaart, Robert;
Szardenings, Florian;
Gerdes, Kenn;
Howard, Martin

Publication type:

Article

Molecular Insights into the Dynamics of Pharmacogenetically Important N-Terminal Variants of the Human β2-Adrenergic Receptor.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004006

By:

Shahane, Ganesh;
Parsania, Chirag;
Sengupta, Durba;
Joshi, Manali

Publication type:

Article

Vesicular Stomatitis Virus Polymerase's Strong Affinity to Its Template Suggests Exotic Transcription Models.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004004

By:

Tang, Xiaolin;
Bendjennat, Mourad;
Saffarian, Saveez

Publication type:

Article

Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003998

By:

Denton, James F.;
Lugo-Martinez, Jose;
Tucker, Abraham E.;
Schrider, Daniel R.;
Warren, Wesley C.;
Hahn, Matthew W.

Publication type:

Article

Lattice-Based Model of Ductal Carcinoma In Situ Suggests Rules for Breast Cancer Progression to an Invasive State.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003997

By:

Boghaert, Eline;
Radisky, Derek C.;
Nelson, Celeste M.

Publication type:

Article

Pyranose Dehydrogenase Ligand Promiscuity: A Generalized Approach to Simulate Monosaccharide Solvation, Binding, and Product Formation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003995

By:

Graf, Michael M. H.;
Zhixiong, Lin;
Bren, Urban;
Haltrich, Dietmar;
van Gunsteren, Wilfred F.;
Oostenbrink, Chris

Publication type:

Article

Developmental Self-Construction and -Configuration of Functional Neocortical Neuronal Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003994

By:

Bauer, Roman;
Zubler, Frédéric;
Pfister, Sabina;
Hauri, Andreas;
Pfeiffer, Michael;
Muir, Dylan R.;
Douglas, Rodney J.

Publication type:

Article

SteatoNet: The First Integrated Human Metabolic Model with Multi-layered Regulation to Investigate Liver-Associated Pathologies.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003993

By:

Naik, Adviti;
Rozman, Damjana;
Belič, Aleš

Publication type:

Article

The Social Bayesian Brain: Does Mentalizing Make a Difference When We Learn?

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003992

By:

Devaine, Marie;
Hollard, Guillaume;
Daunizeau, Jean

Publication type:

Article

The Pharmacodynamics of the p53-Mdm2 Targeting Drug Nutlin: The Role of Gene-Switching Noise.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003991

By:

Puszynski, Krzysztof;
Gandolfi, Alberto;
d'Onofrio, Alberto

Publication type:

Article

Sliding of Proteins Non-specifically Bound to DNA: Brownian Dynamics Studies with Coarse-Grained Protein and DNA Models.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003990

By:

Ando, Tadashi;
Skolnick, Jeffrey

Publication type:

Article

Hippocampal Remapping Is Constrained by Sparseness rather than Capacity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003986

By:

Kammerer, Axel;
Leibold, Christian

Publication type:

Article

Segregating Complex Sound Sources through Temporal Coherence.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003985

By:

Krishnan, Lakshmi;
Elhilali, Mounya;
Shamma, Shihab

Publication type:

Article

Dissecting Dynamic Genetic Variation That Controls Temporal Gene Response in Yeast.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003984

By:

Brodt, Avital;
Botzman, Maya;
David, Eyal;
Gat-Viks, Irit

Publication type:

Article

A Network Convergence Zone in the Hippocampus.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003982

By:

Mišić, Bratislav;
Goñi, Joaquín;
Betzel, Richard F.;
Sporns, Olaf;
McIntosh, Anthony R.

Publication type:

Article

Two-Dimensionality of Yeast Colony Expansion Accompanied by Pattern Formation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003979

By:

Chen, Lin;
Noorbakhsh, Javad;
Adams, Rhys M.;
Samaniego-Evans, Joseph;
Agollah, Germaine;
Nevozhay, Dmitry;
Kuzdzal-Fick, Jennie;
Mehta, Pankaj;
Balázsi, Gábor

Publication type:

Article

Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003977

By:

Nguyen Ba, Alex N.;
Strome, Bob;
Hua, Jun Jie;
Desmond, Jonathan;
Gagnon-Arsenault, Isabelle;
Weiss, Eric L.;
Landry, Christian R.;
Moses, Alan M.

Publication type:

Article

Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003976

By:

Gofman, Yana;
Schärfe, Charlotta;
Marks, Debora S.;
Haliloglu, Turkan;
Ben-Tal, Nir

Publication type:

Article

Heterogeneity and Convergence of Olfactory First-Order Neurons Account for the High Speed and Sensitivity of Second-Order Neurons.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003975

By:

Rospars, Jean-Pierre;
Grémiaux, Alexandre;
Jarriault, David;
Chaffiol, Antoine;
Monsempes, Christelle;
Deisig, Nina;
Anton, Sylvia;
Lucas, Philippe;
Martinez, Dominique

Publication type:

Article

Thermodynamic Costs of Information Processing in Sensory Adaptation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003974

By:

Sartori, Pablo;
Granger, Léo;
Lee, Chiu Fan;
Horowitz, Jordan M.

Publication type:

Article

Yielding Elastic Tethers Stabilize Robust Cell Adhesion.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003971

By:

Whitfield, Matt J.;
Luo, Jonathon P.;
Thomas, Wendy E.

Publication type:

Article

Evolution of Integrated Causal Structures in Animats Exposed to Environments of Increasing Complexity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003966

By:

Albantakis, Larissa;
Hintze, Arend;
Koch, Christof;
Adami, Christoph;
Tononi, Giulio

Publication type:

Article

Glutamate Mediated Astrocytic Filtering of Neuronal Activity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003964

By:

Wallach, Gilad;
Lallouette, Jules;
Herzog, Nitzan;
De Pittà, Maurizio;
Jacob, Eshel Ben;
Berry, Hugues;
Hanein, Yael

Publication type:

Article

“Bioinformatics: Introduction and Methods,” a Bilingual Massive Open Online Course (MOOC) as a New Example for Global Bioinformatics Education.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003955

By:

Ding, Yang;
Wang, Meng;
He, Yao;
Ye, Adam Yongxin;
Yang, Xiaoxu;
Liu, Fenglin;
Meng, Yuqi;
Gao, Ge;
Wei, Liping

Publication type:

Article

Ten Simple Rules for Finishing Your PhD.

Published in:

2014

By:

Marino, Jacopo;
Stefan, Melanie I.;
Blackford, Sarah

Publication type:

Editorial

Molecular Dynamics Study of the Opening Mechanism for DNA Polymerase I.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003961

By:

IIIMiller, Bill R.;
Parish, Carol A.;
Wu, Eugene Y.

Publication type:

Article

Symmetry Restoring Bifurcation in Collective Decision-Making.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003960

By:

Zabzina, Natalia;
Dussutour, Audrey;
Mann, Richard P.;
Sumpter, David J. T.;
Nicolis, Stamatios C.

Publication type:

Article

Live Imaging-Based Model Selection Reveals Periodic Regulation of the Stochastic G1/S Phase Transition in Vertebrate Axial Development.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003957

By:

Sugiyama, Mayu;
Saitou, Takashi;
Kurokawa, Hiroshi;
Sakaue-Sawano, Asako;
Imamura, Takeshi;
Miyawaki, Atsushi;
Iimura, Tadahiro

Publication type:

Article

Deep Neural Networks Rival the Representation of Primate IT Cortex for Core Visual Object Recognition.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003963

By:

Cadieu, Charles F.;
Hong, Ha;
Yamins, Daniel L. K.;
Pinto, Nicolas;
Ardila, Diego;
Solomon, Ethan A.;
Majaj, Najib J.;
DiCarlo, James J.

Publication type:

Article

Intrinsic Neuronal Properties Switch the Mode of Information Transmission in Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003962

By:

Gjorgjieva, Julijana;
Mease, Rebecca A.;
Moody, William J.;
Fairhall, Adrienne L.

Publication type:

Article

A Reaction-Diffusion Model of Cholinergic Retinal Waves.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003953

By:

Lansdell, Benjamin;
Ford, Kevin;
Kutz, J. Nathan

Publication type:

Article

The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003951

By:

Davey, Norman E.;
Satagopam, Venkata P.;
Santiago-Mozos, Salvador;
Villacorta-Martin, Carlos;
Bharat, Tanmay A. M.;
Schneider, Reinhard;
Briggs, John A. G.

Publication type:

Article

Contradictory Behavioral Biases Result from the Influence of Past Stimuli on Perception.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003948

By:

Raviv, Ofri;
Lieder, Itay;
Loewenstein, Yonatan;
Ahissar, Merav

Publication type:

Article

The Amino Acid Alphabet and the Architecture of the Protein Sequence-Structure Map. I. Binary Alphabets.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003946

By:

Ferrada, Evandro

Publication type:

Article

Multitask Learning of Signaling and Regulatory Networks with Application to Studying Human Response to Flu.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003943

By:

Jain, Siddhartha;
Gitter, Anthony;
Bar-Joseph, Ziv

Publication type:

Article

Uncoupled Analysis of Stochastic Reaction Networks in Fluctuating Environments.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003942

By:

Zechner, Christoph;
Koeppl, Heinz

Publication type:

Article

Dynamics from Seconds to Hours in Hodgkin-Huxley Model with Time-Dependent Ion Concentrations and Buffer Reservoirs.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003941

By:

Hübel, Niklas;
Dahlem, Markus A.

Publication type:

Article

Oscillation-Induced Signal Transmission and Gating in Neural Circuits.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003940

By:

Jahnke, Sven;
Memmesheimer, Raoul-Martin;
Timme, Marc

Publication type:

Article

An Extra Dimension to Decision-Making in Animals: The Three-way Trade-off between Speed, Effort per-Unit-Time and Accuracy.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003937

By:

de Froment, Adrian J.;
Rubenstein, Daniel I.;
Levin, Simon A.

Publication type:

Article

Evolution of the Division of Labor between Genes and Enzymes in the RNA World.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003936

By:

Boza, Gergely;
Szilágyi, András;
Kun, Ádám;
Santos, Mauro;
Szathmáry, Eörs

Publication type:

Article

The Role of Membrane-Mediated Interactions in the Assembly and Architecture of Chemoreceptor Lattices.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003932

By:

Haselwandter, Christoph A.;
Wingreen, Ned S.

Publication type:

Article