Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 10

Results: 58

Correction: Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism.

Published in:: 2014
Publication type:: Correction Notice

Correction: Environmental Statistics and Optimal Regulation.

Published in:: 2014
Publication type:: Correction Notice

Correction: Beyond Muscles Stiffness: Importance of State-Estimation to Account for Very Fast Motor Corrections.

Published in:: 2014
Publication type:: Correction Notice

Correction: Inferring on the Intentions of Others by Hierarchical Bayesian Learning.

Published in:: 2014
Publication type:: Correction Notice

dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003929

By:

Fang, Hai

Publication type:

Article

Estimating Location without External Cues.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003927

By:

Cheung, Allen

Publication type:

Article

Linking Macroscopic with Microscopic Neuroanatomy Using Synthetic Neuronal Populations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003921

By:

Schneider, Calvin J.;
Cuntz, Hermann;
Soltesz, Ivan

Publication type:

Article

Establishing and Managing a Global Student Network.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003920

By:

Shanmugam, Avinash;
Macintyre, Geoff

Publication type:

Article

Bistable Forespore Engulfment in Bacillus subtilis by a Zipper Mechanism in Absence of the Cell Wall.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003912

By:

Ojkic, Nikola;
López-Garrido, Javier;
Pogliano, Kit;
Endres, Robert G.

Publication type:

Article

Lipid Clustering Correlates with Membrane Curvature as Revealed by Molecular Simulations of Complex Lipid Bilayers.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003911

By:

Koldsø, Heidi;
Shorthouse, David;
Hélie, Jean;
Sansom, Mark S. P.

Publication type:

Article

Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003910

By:

De Vos, Dirk;
Vissenberg, Kris;
Broeckhove, Jan;
Beemster, Gerrit T. S.

Publication type:

Article

Deducing the Kinetics of Protein Synthesis In Vivo from the Transition Rates Measured In Vitro.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003909

By:

Rudorf, Sophia;
Thommen, Michael;
Rodnina, Marina V.;
Lipowsky, Reinhard

Publication type:

Article

Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003908

By:

Li, Yue;
Liang, Minggao;
Zhang, Zhaolei

Publication type:

Article

Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003893

By:

Bertaux, François;
Stoma, Szymon;
Drasdo, Dirk;
Batt, Gregory

Publication type:

Article

Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003901

By:

Moritsugu, Kei;
Terada, Tohru;
Kidera, Akinori

Publication type:

Article

Rhythmic Manipulation of Objects with Complex Dynamics: Predictability over Chaos.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003900

By:

Nasseroleslami, Bahman;
Hasson, Christopher J.;
Sternad, Dagmar

Publication type:

Article

A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003898

By:

Axen, Seth D.;
Erbilgin, Onur;
Kerfeld, Cheryl A.

Publication type:

Article

Investigating the Structure and Dynamics of the PIK3CA Wild-Type and H1047R Oncogenic Mutant.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003895

By:

Gkeka, Paraskevi;
Evangelidis, Thomas;
Pavlaki, Maria;
Lazani, Vasiliki;
Christoforidis, Savvas;
Agianian, Bogos;
Cournia, Zoe

Publication type:

Article

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003907

By:

Lindgreen, Stinus;
Umu, Sinan Uğur;
Lai, Alicia Sook-Wei;
Eldai, Hisham;
Liu, Wenting;
McGimpsey, Stephanie;
Wheeler, Nicole E.;
Biggs, Patrick J.;
Thomson, Nick R.;
Barquist, Lars;
Poole, Anthony M.;
Gardner, Paul P.

Publication type:

Article

Phosphate Sink Containing Two-Component Signaling Systems as Tunable Threshold Devices.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003890

By:

Amin, Munia;
Kothamachu, Varun B.;
Feliu, Elisenda;
Scharf, Birgit E.;
Porter, Steven L.;
Soyer, Orkun S.

Publication type:

Article

Spectral Signatures of Reorganised Brain Networks in Disorders of Consciousness.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003887

By:

Chennu, Srivas;
Finoia, Paola;
Kamau, Evelyn;
Allanson, Judith;
Williams, Guy B.;
Monti, Martin M.;
Noreika, Valdas;
Arnatkeviciute, Aurina;
Canales-Johnson, Andrés;
Olivares, Francisco;
Cabezas-Soto, Daniela;
Menon, David K.;
Pickard, John D.;
Owen, Adrian M.;
Bekinschtein, Tristan A.

Publication type:

Article

Glycolysis Is Governed by Growth Regime and Simple Enzyme Regulation in Adherent MDCK Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003885

By:

Rehberg, Markus;
Ritter, Joachim B.;
Reichl, Udo

Publication type:

Article

Reconstruction of the Gene Regulatory Network Involved in the Sonic Hedgehog Pathway with a Potential Role in Early Development of the Mouse Brain.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003884

By:

Liu, Jinhua;
Wang, Xuelong;
Li, Juan;
Wang, Haifang;
Wei, Gang;
Yan, Jun

Publication type:

Article

Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003882

By:

Benedict, Matthew N.;
Mundy, Michael B.;
Henry, Christopher S.;
Chia, Nicholas;
Price, Nathan D.

Publication type:

Article

Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003881

By:

Kim, Inhae;
Lee, Heetak;
Han, Seong Kyu;
Kim, Sanguk

Publication type:

Article

FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003880

By:

Peng, Gang;
Fan, Yu;
Wang, Wenyi

Publication type:

Article

Complete Mapping of Substrate Translocation Highlights the Role of LeuT N-terminal Segment in Regulating Transport Cycle.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003879

By:

Cheng, Mary Hongying;
Bahar, Ivet

Publication type:

Article

The Route of HIV Escape from Immune Response Targeting Multiple Sites Is Determined by the Cost-Benefit Tradeoff of Escape Mutations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003878

By:

Batorsky, Rebecca;
Sergeev, Rinat A.;
Rouzine, Igor M.

Publication type:

Article

Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003877

By:

Tark-Dame, Mariliis;
Jerabek, Hansjoerg;
Manders, Erik M. M.;
Heermann, Dieter W.;
van Driel, Roel

Publication type:

Article

Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003876

By:

Seoane, Jose A.;
Campbell, Colin;
Day, Ian N. M.;
Casas, Juan P.;
Gaunt, Tom R.

Publication type:

Article

Predicting the Functions and Specificity of Triterpenoid Synthases: A Mechanism-Based Multi-intermediate Docking Approach.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003874

By:

Tian, Bo-Xue;
Wallrapp, Frank H.;
Holiday, Gemma L.;
Chow, Jeng-Yeong;
Babbitt, Patricia C.;
Poulter, C. Dale;
Jacobson, Matthew P.

Publication type:

Article

Hydrophobic Compounds Reshape Membrane Domains.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003873

By:

Barnoud, Jonathan;
Rossi, Giulia;
Marrink, Siewert J.;
Monticelli, Luca

Publication type:

Article

Evidence of Conformational Selection Driving the Formation of Ligand Binding Sites in Protein-Protein Interfaces.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003872

By:

Bohnuud, Tanggis;
Kozakov, Dima;
Vajda, Sandor

Publication type:

Article

Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003871

By:

Althaus, Christian L.;
Joos, Beda;
Perelson, Alan S.;
Günthard, Huldrych F.

Publication type:

Article

Predicting Chemical Environments of Bacteria from Receptor Signaling.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003870

By:

Clausznitzer, Diana;
Micali, Gabriele;
Neumann, Silke;
Sourjik, Victor;
Endres, Robert G.

Publication type:

Article

Beyond Muscles Stiffness: Importance of State-Estimation to Account for Very Fast Motor Corrections.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003869

By:

Crevecoeur, Frédéric;
Scott, Stephen H.

Publication type:

Article

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003867

By:

Doyle, Boryana;
Fudenberg, Geoffrey;
Imakaev, Maxim;
Mirny, Leonid A.

Publication type:

Article

Tracking the Sleep Onset Process: An Empirical Model of Behavioral and Physiological Dynamics.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003866

By:

Prerau, Michael J.;
Hartnack, Katie E.;
Obregon-Henao, Gabriel;
Sampson, Aaron;
Merlino, Margaret;
Gannon, Karen;
Bianchi, Matt T.;
Ellenbogen, Jeffrey M.;
Purdon, Patrick L.

Publication type:

Article

Ensembles of Spiking Neurons with Noise Support Optimal Probabilistic Inference in a Dynamically Changing Environment.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003859

By:

Legenstein, Robert;
Maass, Wolfgang

Publication type:

Article

The SH2 Domain Regulates c-Abl Kinase Activation by a Cyclin-Like Mechanism and Remodulation of the Hinge Motion.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003863

By:

Dölker, Nicole;
Górna, Maria W.;
Sutto, Ludovico;
Torralba, Antonio S.;
Superti-Furga, Giulio;
Gervasio, Francesco L.

Publication type:

Article

Confidence Sharing: An Economic Strategy for Efficient Information Flows in Animal Groups.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003862

By:

Korman, Amos;
Greenwald, Efrat;
Feinerman, Ofer

Publication type:

Article

Reactive Searching and Infotaxis in Odor Source Localization.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003861

By:

Voges, Nicole;
Chaffiol, Antoine;
Lucas, Philippe;
Martinez, Dominique

Publication type:

Article

Exploring the miRNA Regulatory Network Using Evolutionary Correlations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003860

By:

Obermayer, Benedikt;
Levine, Erel

Publication type:

Article

Natural Isotopic Signatures of Variations in Body Nitrogen Fluxes: A Compartmental Model Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003865

By:

Poupin, Nathalie;
Mariotti, François;
Huneau, Jean-François;
Hermier, Dominique;
Fouillet, Hélène

Publication type:

Article

Synaptic Size Dynamics as an Effectively Stochastic Process.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003846

By:

Statman, Adiel;
Kaufman, Maya;
Minerbi, Amir;
Ziv, Noam E.;
Brenner, Naama

Publication type:

Article

Ten Simple Rules for Writing a PLOS Ten Simple Rules Article.

Published in:

2014

By:

Dashnow, Harriet;
Lonsdale, Andrew;
Bourne, Philip E.

Publication type:

Editorial

Expression Profile of the Schistosoma japonicum Degradome Reveals Differential Protease Expression Patterns and Potential Anti-schistosomal Intervention Targets.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003856

By:

Liu, Shuai;
Cai, Pengfei;
Piao, Xianyu;
Hou, Nan;
Zhou, Xiaosu;
Wu, Chuang;
Wang, Heng;
Chen, Qijun

Publication type:

Article

Linking Myometrial Physiology to Intrauterine Pressure; How Tissue-Level Contractions Create Uterine Contractions of Labor.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003850

By:

Young, Roger C.;
Barendse, Peter

Publication type:

Article

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems.

Published in:

2014

By:

Neal, Maxwell L.;
Cooling, Michael T.;
Smith, Lucian P.;
Thompson, Christopher T.;
Sauro, Herbert M.;
Carlson, Brian E.;
Cook, Daniel L.;
Gennari, John H.

Publication type:

Opinion

Mesoscopic Model and Free Energy Landscape for Protein-DNA Binding Sites: Analysis of Cyanobacterial Promoters.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003835

By:

Tapia-Rojo, Rafael;
Mazo, Juan José;
Hernández, José Ángel;
Peleato, María Luisa;
Fillat, María F.;
Falo, Fernando

Publication type:

Article