Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 9

Results: 38

Barcoding T Cell Calcium Response Diversity with Methods for Automated and Accurate Analysis of Cell Signals (MAAACS).

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003245

By:

Salles, Audrey;
Billaudeau, Cyrille;
Sergé, Arnauld;
Bernard, Anne-Marie;
Phélipot, Marie-Claire;
Bertaux, Nicolas;
Fallet, Mathieu;
Grenot, Pierre;
Marguet, Didier;
He, Hai-Tao;
Hamon, Yannick

Publication type:

Article

Ten Simple Rules for Cultivating Open Science and Collaborative R&D.

Published in:

2013

By:

Masum, Hassan;
Rao, Aarthi;
Good, Benjamin M.;
Todd, Matthew H.;
Edwards, Aled M.;
Chan, Leslie;
Bunin, Barry A.;
Su, Andrew I.;
Thomas, Zakir;
Bourne, Philip E.

Publication type:

Editorial

ISCB Computational Biology Wikipedia Competition.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003242

By:

Bateman, Alex;
Kelso, Janet;
Mietchen, Daniel;
Macintyre, Geoff;
Di Domenico, Tomás;
Abeel, Thomas;
Logan, Darren W.;
Radivojac, Predrag;
Rost, Burkhard

Publication type:

Article

The Regional Student Group Program of the ISCB Student Council: Stories from the Road.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003241

By:

Macintyre, Geoff;
Michaut, Magali;
Abeel, Thomas

Publication type:

Article

Polycation-π Interactions Are a Driving Force for Molecular Recognition by an Intrinsically Disordered Oncoprotein Family.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003239

By:

Song, Jianhui;
Ng, Sheung Chun;
Tompa, Peter;
Lee, Kevin A. W.;
Chan, Hue Sun

Publication type:

Article

Frequency Response of a Protein to Local Conformational Perturbations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003238

By:

Eren, Dilek;
Alakent, Burak

Publication type:

Article

Network Signatures of Survival in Glioblastoma Multiforme.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003237

By:

Patel, Vishal N.;
Gokulrangan, Giridharan;
Chowdhury, Salim A.;
Chen, Yanwen;
Sloan, Andrew E.;
Koyutürk, Mehmet;
Barnholtz-Sloan, Jill;
Chance, Mark R.

Publication type:

Article

Whisker Movements Reveal Spatial Attention: A Unified Computational Model of Active Sensing Control in the Rat.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003236

By:

Mitchinson, Ben;
Prescott, Tony J.

Publication type:

Article

Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003235

By:

Hao, Linhui;
He, Qiuling;
Wang, Zhishi;
Craven, Mark;
Newton, Michael A.;
Ahlquist, Paul

Publication type:

Article

Collective Dynamics Underlying Allosteric Transitions in Hemoglobin.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003232

By:

Vesper, Martin D.;
de Groot, Bert L.

Publication type:

Article

Predictive Modeling of In Vivo Response to Gemcitabine in Pancreatic Cancer.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003231

By:

Lee, James J.;
Huang, Justin;
England, Christopher G.;
McNally, Lacey R.;
Frieboes, Hermann B.

Publication type:

Article

Adaptation Dynamics in Densely Clustered Chemoreceptors.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003230

By:

Pontius, William;
Sneddon, Michael W.;
Emonet, Thierry

Publication type:

Article

Tunable Stochastic Pulsing in the Escherichia coli Multiple Antibiotic Resistance Network from Interlinked Positive and Negative Feedback Loops.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003229

By:

Garcia-Bernardo, Javier;
Dunlop, Mary J.

Publication type:

Article

Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003226

By:

Tang, Jing;
Karhinen, Leena;
Xu, Tao;
Szwajda, Agnieszka;
Yadav, Bhagwan;
Wennerberg, Krister;
Aittokallio, Tero

Publication type:

Article

Trial-Type Dependent Frames of Reference for Value Comparison.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003225

By:

Hunt, Laurence T.;
Woolrich, Mark W.;
Rushworth, Matthew F. S.;
Behrens, Timothy E. J.

Publication type:

Article

Analyzing and Synthesizing Phylogenies Using Tree Alignment Graphs.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003223

By:

Smith, Stephen A.;
Brown, Joseph W.;
Hinchliff, Cody E.

Publication type:

Article

Mechanistic Model of Natural Killer Cell Proliferative Response to IL-15 Receptor Stimulation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003222

By:

Zhao, Yun M.;
French, Anthony R.

Publication type:

Article

Potential Role of a Bistable Histidine Kinase Switch in the Asymmetric Division Cycle of Caulobacter crescentus.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003221

By:

Subramanian, Kartik;
Paul, Mark R.;
Tyson, John J.

Publication type:

Article

Computational Optogenetics: Empirically-Derived Voltage- and Light-Sensitive Channelrhodopsin-2 Model.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003220

By:

Williams, John C.;
Xu, Jianjin;
Lu, Zhongju;
Klimas, Aleksandra;
Chen, Xuxin;
Ambrosi, Christina M.;
Cohen, Ira S.;
Entcheva, Emilia

Publication type:

Article

From Birdsong to Human Speech Recognition: Bayesian Inference on a Hierarchy of Nonlinear Dynamical Systems.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003219

By:

Yildiz, Izzet B.;
von Kriegstein, Katharina;
Kiebel, Stefan J.

Publication type:

Article

Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003217

By:

Barua, Dipak;
Hlavacek, William S.

Publication type:

Article

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003216

By:

Agius, Rudi;
Torchala, Mieczyslaw;
Moal, Iain H.;
Fernández-Recio, Juan;
Bates, Paul A.

Publication type:

Article

From Cellular Characteristics to Disease Diagnosis: Uncovering Phenotypes with Supercells.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003215

By:

Candia, Julián;
Maunu, Ryan;
Driscoll, Meghan;
Biancotto, Angélique;
Dagur, Pradeep;
McCoy Jr, J. Philip;
Sen, H. Nida;
Wei, Lai;
Maritan, Amos;
Cao, Kan;
Nussenblatt, Robert B.;
Banavar, Jayanth R.;
Losert, Wolfgang

Publication type:

Article

The Next Generation of Transcription Factor Binding Site Prediction.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003214

By:

Mathelier, Anthony;
Wasserman, Wyeth W.

Publication type:

Article

Mammalian Rest/Activity Patterns Explained by Physiologically Based Modeling.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003213

By:

Phillips, A. J. K.;
Fulcher, B. D.;
Robinson, P. A.;
Klerman, E. B.

Publication type:

Article

Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003212

By:

Maccari, Giuseppe;
Di Luca, Mariagrazia;
Nifosí, Riccardo;
Cardarelli, Francesco;
Signore, Giovanni;
Boccardi, Claudia;
Bifone, Angelo

Publication type:

Article

Semi-automated Curation of Metabolic Models via Flux Balance Analysis: A Case Study with Mycoplasma gallisepticum.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003208

By:

Bautista, Eddy J.;
Zinski, Joseph;
Szczepanek, Steven M.;
Johnson, Erik L.;
Tulman, Edan R.;
Ching, Wei-Mei;
Geary, Steven J.;
Srivastava, Ranjan

Publication type:

Article

Spike Triggered Covariance in Strongly Correlated Gaussian Stimuli.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003206

By:

Aljadeff, Johnatan;
Segev, Ronen;
Berry II, Michael J.;
Sharpee, Tatyana O.

Publication type:

Article

Motility Enhancement through Surface Modification Is Sufficient for Cyanobacterial Community Organization during Phototaxis.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003205

By:

Ursell, Tristan;
Chau, Rosanna Man Wah;
Wisen, Susanne;
Bhaya, Devaki;
Huang, Kerwyn Casey

Publication type:

Article

Predicting Odor Perceptual Similarity from Odor Structure.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003184

By:

Snitz, Kobi;
Yablonka, Adi;
Weiss, Tali;
Frumin, Idan;
Khan, Rehan M.;
Sobel, Noam

Publication type:

Article

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003198

By:

Chen, Jing;
Hu, Zhen;
Phatak, Mukta;
Reichard, John;
Freudenberg, Johannes M.;
Sivaganesan, Siva;
Medvedovic, Mario

Publication type:

Article

Using Biological Pathway Data with Paxtools.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003194

By:

Demir, Emek;
Babur, Özgün;
Rodchenkov, Igor;
Aksoy, Bülent Arman;
Fukuda, Ken I.;
Gross, Benjamin;
Sümer, Onur Selçuk;
Bader, Gary D.;
Sander, Chris

Publication type:

Article

Specialization of Gene Expression during Mouse Brain Development.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003185

By:

Liscovitch, Noa;
Chechik, Gal

Publication type:

Article

Distal Loop Flexibility of a Regulatory Domain Modulates Dynamics and Activity of C-Terminal Src Kinase (Csk).

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003188

By:

Barkho, Sulyman;
Pierce, Levi C. T.;
McGlone, Maria L.;
Li, Sheng;
Woods Jr, Virgil L.;
Walker, Ross C.;
Adams, Joseph A.;
Jennings, Patricia A.

Publication type:

Article

Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003204

By:

Melas, Ioannis N.;
Samaga, Regina;
Alexopoulos, Leonidas G.;
Klamt, Steffen

Publication type:

Article

Learning Contrast-Invariant Cancellation of Redundant Signals in Neural Systems.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003180

By:

Mejias, Jorge F.;
Marsat, Gary;
Bol, Kieran;
Maler, Leonard;
Longtin, André

Publication type:

Article

Task-Based Core-Periphery Organization of Human Brain Dynamics.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003171

By:

Bassett, Danielle S.;
Wymbs, Nicholas F.;
Rombach, M. Puck;
Porter, Mason A.;
Mucha, Peter J.;
Grafton, Scott T.

Publication type:

Article

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003168

By:

Lasserre, Julia;
Chung, Ho-Ryun;
Vingron, Martin

Publication type:

Article

Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 9

Barcoding T Cell Calcium Response Diversity with Methods for Automated and Accurate Analysis of Cell Signals (MAAACS).

Ten Simple Rules for Cultivating Open Science and Collaborative R&D.

ISCB Computational Biology Wikipedia Competition.

The Regional Student Group Program of the ISCB Student Council: Stories from the Road.

Polycation-π Interactions Are a Driving Force for Molecular Recognition by an Intrinsically Disordered Oncoprotein Family.

Frequency Response of a Protein to Local Conformational Perturbations.

Network Signatures of Survival in Glioblastoma Multiforme.

Whisker Movements Reveal Spatial Attention: A Unified Computational Model of Active Sensing Control in the Rat.

Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors.

Collective Dynamics Underlying Allosteric Transitions in Hemoglobin.

Predictive Modeling of <i>In Vivo</i> Response to Gemcitabine in Pancreatic Cancer.

Adaptation Dynamics in Densely Clustered Chemoreceptors.

Tunable Stochastic Pulsing in the <i>Escherichia coli</i> Multiple Antibiotic Resistance Network from Interlinked Positive and Negative Feedback Loops.

Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways.

Trial-Type Dependent Frames of Reference for Value Comparison.

Analyzing and Synthesizing Phylogenies Using Tree Alignment Graphs.

Mechanistic Model of Natural Killer Cell Proliferative Response to IL-15 Receptor Stimulation.

Potential Role of a Bistable Histidine Kinase Switch in the Asymmetric Division Cycle of <i>Caulobacter crescentus</i>.

Computational Optogenetics: Empirically-Derived Voltage- and Light-Sensitive Channelrhodopsin-2 Model.

From Birdsong to Human Speech Recognition: Bayesian Inference on a Hierarchy of Nonlinear Dynamical Systems.

Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells.

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization.

From Cellular Characteristics to Disease Diagnosis: Uncovering Phenotypes with Supercells.

The Next Generation of Transcription Factor Binding Site Prediction.

Mammalian Rest/Activity Patterns Explained by Physiologically Based Modeling.

Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization.

Semi-automated Curation of Metabolic Models via Flux Balance Analysis: A Case Study with <i>Mycoplasma gallisepticum</i>.

Spike Triggered Covariance in Strongly Correlated Gaussian Stimuli.

Motility Enhancement through Surface Modification Is Sufficient for Cyanobacterial Community Organization during Phototaxis.

Predicting Odor Perceptual Similarity from Odor Structure.

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules.

Using Biological Pathway Data with Paxtools.

Specialization of Gene Expression during Mouse Brain Development.

Distal Loop Flexibility of a Regulatory Domain Modulates Dynamics and Activity of C-Terminal Src Kinase (Csk).

Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs.

Learning Contrast-Invariant Cancellation of Redundant Signals in Neural Systems.

Task-Based Core-Periphery Organization of Human Brain Dynamics.

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks.