Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 7

Results: 48

Cell-Cycle Dependence of Transcription Dominates Noise in Gene Expression.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003161

By:

Zopf, C. J.;
Quinn, Katie;
Zeidman, Joshua;
Maheshri, Narendra

Publication type:

Article

Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003159

By:

Veith, Nadine;
Feldman-Salit, Anna;
Cojocaru, Vlad;
Henrich, Stefan;
Kummer, Ursula;
Wade, Rebecca C.

Publication type:

Article

Expanding the Druggable Space of the LSD1/CoREST Epigenetic Target: New Potential Binding Regions for Drug-Like Molecules, Peptides, Protein Partners, and Chromatin.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003158

By:

Robertson, James C.;
Hurley, Nate C.;
Tortorici, Marcello;
Ciossani, Giuseppe;
Borrello, Maria Teresa;
Vellore, Nadeem A.;
Ganesan, A.;
Mattevi, Andrea;
Baron, Riccardo

Publication type:

Article

Information and Efficiency in the Nervous System—A Synthesis.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003157

By:

Sengupta, Biswa;
Stemmler, Martin B.;
Friston, Karl J.

Publication type:

Article

Insertion of the Ca2+-Independent Phospholipase A2 into a Phospholipid Bilayer via Coarse-Grained and Atomistic Molecular Dynamics Simulations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003156

By:

Bucher, Denis;
Hsu, Yuan-Hao;
Mouchlis, Varnavas D.;
Dennis, Edward A.;
McCammon, J. Andrew

Publication type:

Article

A Systematic Framework for Molecular Dynamics Simulations of Protein Post-Translational Modifications.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003154

By:

Petrov, Drazen;
Margreitter, Christian;
Grandits, Melanie;
Oostenbrink, Chris;
Zagrovic, Bojan

Publication type:

Article

Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003155

By:

Verma, Deeptak;
Jacobs, Donald J.;
Livesay, Dennis R.

Publication type:

Article

GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003153

By:

Paila, Umadevi;
Chapman, Brad A.;
Kirchner, Rory;
Quinlan, Aaron R.

Publication type:

Article

Evolutionary Evidence for Alternative Structure in RNA Sequence Co-variation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003152

By:

Ritz, Justin;
Martin, Joshua S.;
Laederach, Alain

Publication type:

Article

Improving Pharmacokinetic-Pharmacodynamic Modeling to Investigate Anti-Infective Chemotherapy with Application to the Current Generation of Antimalarial Drugs.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003151

By:

Kay, Katherine;
Hastings, Ian M.

Publication type:

Article

A Mixture of Delta-Rules Approximation to Bayesian Inference in Change-Point Problems.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003150

By:

Wilson, Robert C.;
Nassar, Matthew R.;
Gold, Joshua I.

Publication type:

Article

Ten Simple Rules for Writing a Literature Review.

Published in:

2013

By:

Pautasso, Marco

Publication type:

Editorial

Dynamics of SIN Asymmetry Establishment.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003147

By:

Bajpai, Archana;
Feoktistova, Anna;
Chen, Jun-Song;
McCollum, Dannel;
Sato, Masamitsu;
Carazo-Salas, Rafael E.;
Gould, Kathleen L.;
Csikász-Nagy, Attila

Publication type:

Article

Inferring Nonlinear Neuronal Computation Based on Physiologically Plausible Inputs.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003143

By:

McFarland, James M.;
Cui, Yuwei;
Butts, Daniel A.

Publication type:

Article

Efficient Partitioning of Memory Systems and Its Importance for Memory Consolidation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003146

By:

Roxin, Alex;
Fusi, Stefano

Publication type:

Article

Statistical Analysis of Molecular Signal Recording.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003145

By:

Glaser, Joshua I.;
Zamft, Bradley M.;
Marblestone, Adam H.;
Moffitt, Jeffrey R.;
Tyo, Keith;
Boyden, Edward S.;
Church, George;
Kording, Konrad P.

Publication type:

Article

Structural Disorder Provides Increased Adaptability for Vesicle Trafficking Pathways.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003144

By:

Pietrosemoli, Natalia;
Pancsa, Rita;
Tompa, Peter

Publication type:

Article

Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003148

By:

Sung, Jaeyun;
Kim, Pan-Jun;
Ma, Shuyi;
Funk, Cory C.;
Magis, Andrew T.;
Wang, Yuliang;
Hood, Leroy;
Geman, Donald;
Price, Nathan D.

Publication type:

Article

Epidemiologically Optimal Static Networks from Temporal Network Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003142

By:

Holme, Petter

Publication type:

Article

Dynamic Fluctuations Provide the Basis of a Conformational Switch Mechanism in Apo Cyclic AMP Receptor Protein.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003141

By:

Aykaç Fas, Burcu;
Tutar, Yusuf;
Haliloğlu, Türkan

Publication type:

Article

Distinct Allelic Patterns of Nanog Expression Impart Embryonic Stem Cell Population Heterogeneity.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003140

By:

Wu, Jincheng;
Tzanakakis, Emmanuel S.

Publication type:

Article

Spatial Stochastic Dynamics Enable Robust Cell Polarization.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003139

By:

Lawson, Michael J.;
Drawert, Brian;
Khammash, Mustafa;
Petzold, Linda;
Yi, Tau-Mu

Publication type:

Article

Successful Reconstruction of a Physiological Circuit with Known Connectivity from Spiking Activity Alone.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003138

By:

Gerhard, Felipe;
Kispersky, Tilman;
Gutierrez, Gabrielle J.;
Marder, Eve;
Kramer, Mark;
Eden, Uri

Publication type:

Article

Frequency Dependence of Signal Power and Spatial Reach of the Local Field Potential.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003137

By:

Łęski, Szymon;
Lindén, Henrik;
Tetzlaff, Tom;
Pettersen, Klas H.;
Einevoll, Gaute T.

Publication type:

Article

New Universal Rules of Eukaryotic Translation Initiation Fidelity.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003136

By:

Zur, Hadas;
Tuller, Tamir

Publication type:

Article

Genetic Selection for Context-Dependent Stochastic Phenotypes: Sp1 and TATA Mutations Increase Phenotypic Noise in HIV-1 Gene Expression.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003135

By:

Miller-Jensen, Kathryn;
Skupsky, Ron;
Shah, Priya S.;
Arkin, Adam P.;
Schaffer, David V.

Publication type:

Article

Engineering a More Thermostable Blue Light Photo Receptor Bacillus subtilis YtvA LOV Domain by a Computer Aided Rational Design Method.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003129

By:

Song, Xiangfei;
Wang, Yefei;
Shu, Zhiyu;
Hong, Jingbo;
Li, Tong;
Yao, Lishan

Publication type:

Article

Gain Control Network Conditions in Early Sensory Coding.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003133

By:

Serrano, Eduardo;
Nowotny, Thomas;
Levi, Rafael;
Smith, Brian H.;
Huerta, Ramón

Publication type:

Article

Transcription Factor Binding Profiles Reveal Cyclic Expression of Human Protein-coding Genes and Non-coding RNAs.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003132

By:

Cheng, Chao;
Ung, Matthew;
Grant, Gavin D.;
Whitfield, Michael L.

Publication type:

Article

Predictors of Hepatitis B Cure Using Gene Therapy to Deliver DNA Cleavage Enzymes: A Mathematical Modeling Approach.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003131

By:

Schiffer, Joshua T.;
Swan, Dave A.;
Stone, Daniel;
Jerome, Keith R.

Publication type:

Article

Hierarchical Modeling for Rare Event Detection and Cell Subset Alignment across Flow Cytometry Samples.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003130

By:

Cron, Andrew;
Gouttefangeas, Cécile;
Frelinger, Jacob;
Lin, Lin;
Singh, Satwinder K.;
Britten, Cedrik M.;
Welters, Marij J. P.;
van der Burg, Sjoerd H.;
West, Mike;
Chan, Cliburn

Publication type:

Article

Charles Bonnet Syndrome: Evidence for a Generative Model in the Cortex?

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003134

By:

Reichert, David P.;
Seriès, Peggy;
Storkey, Amos J.

Publication type:

Article

Co-expression Profiling of Autism Genes in the Mouse Brain.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003128

By:

Menashe, Idan;
Grange, Pascal;
Larsen, Eric C.;
Banerjee-Basu, Sharmila;
Mitra, Partha P.

Publication type:

Article

Pathway-based Screening Strategy for Multitarget Inhibitors of Diverse Proteins in Metabolic Pathways.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003127

By:

Hsu, Kai-Cheng;
Cheng, Wen-Chi;
Chen, Yen-Fu;
Wang, Wen-Ching;
Yang, Jinn-Moon

Publication type:

Article

Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003126

By:

Dreyfuss, Jonathan M.;
Zucker, Jeremy D.;
Hood, Heather M.;
Ocasio, Linda R.;
Sachs, Matthew S.;
Galagan, James E.

Publication type:

Article

A Model for the Self-Organization of Vesicular Flux and Protein Distributions in the Golgi Apparatus.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003125

By:

Ispolatov, Iaroslav;
Müsch, Anne

Publication type:

Article

Shared Protein Complex Subunits Contribute to Explaining Disrupted Co-occurrence.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003124

By:

Schneider, Adrian;
Seidl, Michael F.;
Snel, Berend

Publication type:

Article

Predicting Network Activity from High Throughput Metabolomics.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003123

By:

Li, Shuzhao;
Park, Youngja;
Duraisingham, Sai;
Strobel, Frederick H.;
Khan, Nooruddin;
Soltow, Quinlyn A.;
Jones, Dean P.;
Pulendran, Bali

Publication type:

Article

Interaction of Motility, Directional Sensing, and Polarity Modules Recreates the Behaviors of Chemotaxing Cells.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003122

By:

Shi, Changji;
Huang, Chuan-Hsiang;
Devreotes, Peter N.;
Iglesias, Pablo A.

Publication type:

Article

The Role of Multiple Marks in Epigenetic Silencing and the Emergence of a Stable Bivalent Chromatin State.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003121

By:

Mukhopadhyay, Swagatam;
Sengupta, Anirvan M.

Publication type:

Article

Towards Predicting the Response of a Solid Tumour to Chemotherapy and Radiotherapy Treatments: Clinical Insights from a Computational Model.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003120

By:

Powathil, Gibin G.;
Adamson, Douglas J. A.;
Chaplain, Mark A. J.

Publication type:

Article

Target Essentiality and Centrality Characterize Drug Side Effects.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003119

By:

Wang, Xiujuan;
Thijssen, Bram;
Yu, Haiyuan

Publication type:

Article

‘HypothesisFinder:’ A Strategy for the Detection of Speculative Statements in Scientific Text.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003117

By:

Malhotra, Ashutosh;
Younesi, Erfan;
Gurulingappa, Harsha;
Hofmann-Apitius, Martin

Publication type:

Article

The Minimal Complexity of Adapting Agents Increases with Fitness.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003111

By:

Joshi, Nikhil J.;
Tononi, Giulio;
Koch, Christof

Publication type:

Article

A Family of Algorithms for Computing Consensus about Node State from Network Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003109

By:

Brush, Eleanor R.;
Krakauer, David C.;
Flack, Jessica C.

Publication type:

Article

Optimal Dynamics for Quality Control in Spatially Distributed Mitochondrial Networks.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003108

By:

Patel, Pinkesh K.;
Shirihai, Orian;
Huang, Kerwyn Casey

Publication type:

Article

Models of Self-Peptide Sampling by Developing T Cells Identify Candidate Mechanisms of Thymic Selection.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003102

By:

Bains, Iren;
van Santen, Hisse M.;
Seddon, Benedict;
Yates, Andrew J.

Publication type:

Article

Consistent Estimation of Gibbs Energy Using Component Contributions.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003098

By:

Noor, Elad;
Haraldsdóttir, Hulda S.;
Milo, Ron;
Fleming, Ronan M. T.

Publication type:

Article